{"id":"https://openalex.org/W4308436127","doi":"https://doi.org/10.1186/s12859-022-04812-w","title":"A novel method for drug-target interaction prediction based on graph transformers model","display_name":"A novel method for drug-target interaction prediction based on graph transformers model","publication_year":2022,"publication_date":"2022-11-03","ids":{"openalex":"https://openalex.org/W4308436127","doi":"https://doi.org/10.1186/s12859-022-04812-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/36329406"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04812-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04812-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04812-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04812-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065278960","display_name":"Hongmei Wang","orcid":"https://orcid.org/0009-0004-5787-9615"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongmei Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Changchun, China","institution_ids":["https://openalex.org/I4385474403","https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100334122","display_name":"Fang Guo","orcid":"https://orcid.org/0000-0003-4883-1594"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang Guo","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Changchun, China","institution_ids":["https://openalex.org/I4385474403","https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110605128","display_name":"Mengyan Du","orcid":null},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mengyan Du","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Changchun, China","institution_ids":["https://openalex.org/I4385474403","https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089534072","display_name":"Guishen Wang","orcid":"https://orcid.org/0000-0001-6039-9285"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":null,"type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guishen Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Changchun University of Technology, Changchun, China. wangguishen@ccut.edu.cn","College of Computer Science and Engineering, Changchun University of Technology, Changchun, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Changchun, China. wangguishen@ccut.edu.cn","institution_ids":[]},{"raw_affiliation_string":"College of Computer Science and Engineering, Changchun University of Technology, Changchun, China","institution_ids":["https://openalex.org/I4385474403","https://openalex.org/I4385474403"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100611825","display_name":"Chen Cao","orcid":"https://orcid.org/0000-0001-5343-808X"},"institutions":[{"id":"https://openalex.org/I83519826","display_name":"Nanjing Medical University","ror":"https://ror.org/059gcgy73","country_code":"CN","type":"education","lineage":["https://openalex.org/I83519826"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chen Cao","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada. chen.cao@ucalgary.ca","School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, China. chen.cao@ucalgary.ca","School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, China"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Canada. chen.cao@ucalgary.ca","institution_ids":[]},{"raw_affiliation_string":"School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, China. chen.cao@ucalgary.ca","institution_ids":[]},{"raw_affiliation_string":"School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing, China","institution_ids":["https://openalex.org/I83519826"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100611825"],"corresponding_institution_ids":["https://openalex.org/I83519826"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.7312,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.96651745,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"23","issue":"1","first_page":"459","last_page":"459"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9318000078201294,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.6921603679656982},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6673536896705627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6375488042831421},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5181633234024048},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.503393828868866},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4840956926345825},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34822186827659607},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1629997193813324},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.12505057454109192},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10977619886398315},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1067420244216919},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09490770101547241},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.07453197240829468}],"concepts":[{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.6921603679656982},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6673536896705627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6375488042831421},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5181633234024048},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.503393828868866},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4840956926345825},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34822186827659607},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1629997193813324},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.12505057454109192},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10977619886398315},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1067420244216919},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09490770101547241},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.07453197240829468},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04812-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04812-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04812-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36329406","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36329406","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:1cdde3ecac094fb79d03bbe79751766f","is_oa":true,"landing_page_url":"https://doaj.org/article/1cdde3ecac094fb79d03bbe79751766f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-17 (2022)","raw_type":"article"},{"id":"pmh:oai:prism.ucalgary.ca:1880/115421","is_oa":false,"landing_page_url":"http://hdl.handle.net/1880/115421","pdf_url":null,"source":{"id":"https://openalex.org/S4306402212","display_name":"PRISM (University of Calgary)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168635309","host_organization_name":"University of Calgary","host_organization_lineage":["https://openalex.org/I168635309"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9635108","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9635108","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04812-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04812-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04812-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4308436127.pdf","grobid_xml":"https://content.openalex.org/works/W4308436127.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W2578119541","https://openalex.org/W2586637063","https://openalex.org/W2753953057","https://openalex.org/W2767891136","https://openalex.org/W2768721188","https://openalex.org/W2791294996","https://openalex.org/W2805086457","https://openalex.org/W2895018811","https://openalex.org/W2896646632","https://openalex.org/W2906564412","https://openalex.org/W2909240409","https://openalex.org/W2915839674","https://openalex.org/W2916047525","https://openalex.org/W2935632020","https://openalex.org/W2952522777","https://openalex.org/W2954599614","https://openalex.org/W2965237588","https://openalex.org/W2965857891","https://openalex.org/W2980234582","https://openalex.org/W2982147804","https://openalex.org/W2986944126","https://openalex.org/W2990426823","https://openalex.org/W3003302501","https://openalex.org/W3004930794","https://openalex.org/W3012012790","https://openalex.org/W3018980093","https://openalex.org/W3024059586","https://openalex.org/W3040062994","https://openalex.org/W3043760658","https://openalex.org/W3045389776","https://openalex.org/W3085429933","https://openalex.org/W3120712761","https://openalex.org/W3127568980","https://openalex.org/W3128707208","https://openalex.org/W3138896806","https://openalex.org/W3148711710","https://openalex.org/W3155300875","https://openalex.org/W3158002239","https://openalex.org/W3161797715","https://openalex.org/W3184751179","https://openalex.org/W3187966659","https://openalex.org/W3188463051","https://openalex.org/W3198910346"],"related_works":["https://openalex.org/W4390443207","https://openalex.org/W2509838516","https://openalex.org/W1971106435","https://openalex.org/W2623587811","https://openalex.org/W2008235780","https://openalex.org/W2148679377","https://openalex.org/W2133776184","https://openalex.org/W2177411254","https://openalex.org/W1598853836","https://openalex.org/W2106029302"],"abstract_inverted_index":{"This":[0],"method":[1],"introduces":[2],"a":[3,22],"line":[4],"graph":[5,23],"to":[6,20,28],"model":[7],"the":[8,30],"relationship":[9],"between":[10],"drug":[11],"and":[12],"target.":[13],"After":[14],"transforming":[15],"drug-target":[16,34],"interactions":[17],"from":[18],"links":[19],"nodes,":[21],"transformer":[24],"network":[25],"is":[26],"used":[27],"accomplish":[29],"task":[31],"of":[32],"predicting":[33],"interactions.":[35]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
