{"id":"https://openalex.org/W4284962104","doi":"https://doi.org/10.1186/s12859-022-04809-5","title":"getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories","display_name":"getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories","publication_year":2022,"publication_date":"2022-07-08","ids":{"openalex":"https://openalex.org/W4284962104","doi":"https://doi.org/10.1186/s12859-022-04809-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/35804320"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04809-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04809-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04809-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04809-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052599459","display_name":"Vincent Moco","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Vincent Moco","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027848979","display_name":"Damien Cazenave","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Damien Cazenave","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112486458","display_name":"Ma\u00eblle Garnier","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Ma\u00eblle Garnier","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026238773","display_name":"Matthieu Pot","orcid":"https://orcid.org/0000-0002-1309-9463"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Matthieu Pot","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070704686","display_name":"Isabel Marcelino","orcid":"https://orcid.org/0000-0001-5454-8811"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Isabel Marcelino","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050311311","display_name":"Antoine Talarmin","orcid":"https://orcid.org/0000-0002-7611-2725"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Antoine Talarmin","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108120391","display_name":"St\u00e9phanie Guyomard-Rabenirina","orcid":null},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"St\u00e9phanie Guyomard-Rabenirina","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026401276","display_name":"S\u00e9bastien Breurec","orcid":"https://orcid.org/0000-0003-4188-0377"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210142474","display_name":"Centre Hospitalier Universitaire Pointe-\u00e0-Pitre","ror":"https://ror.org/04sfmcd28","country_code":"GP","type":"healthcare","lineage":["https://openalex.org/I4210142474"]},{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]},{"id":"https://openalex.org/I52585520","display_name":"Universit\u00e9 des Antilles","ror":"https://ror.org/02ryfmr77","country_code":"GP","type":"education","lineage":["https://openalex.org/I52585520"]}],"countries":["FR","GP"],"is_corresponding":false,"raw_author_name":"S\u00e9bastien Breurec","raw_affiliation_strings":["Centre d'Investigation Clinique Antilles Guyane, Inserm CIC 1424, Pointe-\u00e0-Pitre, France","Facult\u00e9 de M\u00e9decine Hyacinthe Bastaraud, Universit\u00e9 des Antilles, Pointe-\u00e0-Pitre, France","Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","Centre d\u2019Investigation Clinique Antilles Guyane, Inserm CIC 1424, Pointe-\u00e0-Pitre, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre d'Investigation Clinique Antilles Guyane, Inserm CIC 1424, Pointe-\u00e0-Pitre, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I52585520","https://openalex.org/I4210142474"]},{"raw_affiliation_string":"Facult\u00e9 de M\u00e9decine Hyacinthe Bastaraud, Universit\u00e9 des Antilles, Pointe-\u00e0-Pitre, France","institution_ids":[]},{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]},{"raw_affiliation_string":"Centre d\u2019Investigation Clinique Antilles Guyane, Inserm CIC 1424, Pointe-\u00e0-Pitre, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003028085","display_name":"S\u00e9verine Ferdinand","orcid":"https://orcid.org/0000-0001-8258-5089"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"S\u00e9verine Ferdinand","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085749572","display_name":"Alexis Dereeper","orcid":"https://orcid.org/0000-0001-8120-8409"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Alexis Dereeper","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044689221","display_name":"Yann Reynaud","orcid":"https://orcid.org/0000-0002-1966-7249"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":false,"raw_author_name":"Yann Reynaud","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033110783","display_name":"David Couvin","orcid":"https://orcid.org/0000-0002-7897-9023"},"institutions":[{"id":"https://openalex.org/I4210149295","display_name":"Institut Pasteur de la Guadeloupe","ror":"https://ror.org/042cxsy45","country_code":"GP","type":"facility","lineage":["https://openalex.org/I4210149295"]}],"countries":["GP"],"is_corresponding":true,"raw_author_name":"David Couvin","raw_affiliation_strings":["Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France. david.couvin@googlemail.com","Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France"],"raw_orcid":"https://orcid.org/0000-0002-7897-9023","affiliations":[{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France. david.couvin@googlemail.com","institution_ids":["https://openalex.org/I4210149295"]},{"raw_affiliation_string":"Unit\u00e9 Transmission, R\u00e9servoir et Diversit\u00e9 des Pathog\u00e8nes, Institut Pasteur de Guadeloupe, Les Abymes, Guadeloupe, France","institution_ids":["https://openalex.org/I4210149295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5033110783"],"corresponding_institution_ids":["https://openalex.org/I4210149295"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4331,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.5837348,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"23","issue":"1","first_page":"268","last_page":"268"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3052000105381012,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3052000105381012,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.10450000315904617,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.09390000253915787,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.7513633966445923},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6466737985610962},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5896168947219849},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4938734173774719},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48956140875816345},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.4823536276817322},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4823305308818817},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4235597848892212},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4022132456302643},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3838145136833191},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.366801917552948},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34090656042099},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2143005132675171},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1799992322921753},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1628435254096985}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.7513633966445923},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6466737985610962},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5896168947219849},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4938734173774719},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48956140875816345},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.4823536276817322},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4823305308818817},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4235597848892212},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4022132456302643},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3838145136833191},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.366801917552948},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34090656042099},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2143005132675171},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1799992322921753},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1628435254096985},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009711","descriptor_name":"Nucleotides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-022-04809-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04809-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04809-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35804320","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35804320","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-05166348v1","is_oa":true,"landing_page_url":"https://hal.science/hal-05166348","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2022, 23 (1), pp.268. &#x27E8;10.1186/s12859-022-04809-5&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:archimer.ifremer.fr:89999","is_oa":true,"landing_page_url":"https://archimer.ifremer.fr/doc/00788/89999/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196267","display_name":"Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154202486","host_organization_name":"Ifremer","host_organization_lineage":["https://openalex.org/I154202486"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bmc Bioinformatics (1471-2105) (Springer Science and Business Media LLC), 2022-07 , Vol. 23 , N. 1 , P. 268 (11p.)","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:ba62dd85824f4d718f60d6cb8fecc6eb","is_oa":true,"landing_page_url":"https://doaj.org/article/ba62dd85824f4d718f60d6cb8fecc6eb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-11 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9264741","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9264741","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04809-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04809-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04809-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6858536002","display_name":null,"funder_award_id":"2015-FED-186","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320318363","display_name":"Conseil R\u00e9gional de Guadeloupe","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4284962104.pdf","grobid_xml":"https://content.openalex.org/works/W4284962104.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W2120141270","https://openalex.org/W2134852597","https://openalex.org/W2135323299","https://openalex.org/W2143325926","https://openalex.org/W2150934173","https://openalex.org/W2225557190","https://openalex.org/W2302501749","https://openalex.org/W2346143774","https://openalex.org/W2613409207","https://openalex.org/W2804906140","https://openalex.org/W2891078715","https://openalex.org/W2900102202","https://openalex.org/W2910766081","https://openalex.org/W2985115330","https://openalex.org/W2989362889","https://openalex.org/W2994927633","https://openalex.org/W4210825203","https://openalex.org/W4236865533","https://openalex.org/W4252710376"],"related_works":["https://openalex.org/W2990171052","https://openalex.org/W3028206028","https://openalex.org/W3206675662","https://openalex.org/W4386774076","https://openalex.org/W3028050938","https://openalex.org/W2124685016","https://openalex.org/W2160142494","https://openalex.org/W4241422942","https://openalex.org/W4242729757","https://openalex.org/W4230606671"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biological":[1],"sequences":[2,85],"are":[3,149,234,255],"increasing":[4],"rapidly":[5],"and":[6,43,48,57,118,132,222,252],"exponentially":[7],"worldwide.":[8],"Nucleotide":[9,46],"sequence":[10,35,111,203,225],"databases":[11],"play":[12],"an":[13],"important":[14],"role":[15],"in":[16,60,142,175,219,228,236],"providing":[17],"meaningful":[18],"genomic":[19],"information":[20,36,82,174],"on":[21,83,114],"a":[22,61,68,115,122,143,180,229],"variety":[23],"of":[24,96,102,159,208,216],"biological":[25],"organisms.":[26],"RESULTS:":[27],"The":[28,206,243],"getSequenceInfo":[29,72,251],"software":[30],"tool":[31],"allows":[32,127],"to":[33,79,109,177,197,202,212,223],"access":[34],"from":[37,121],"various":[38,199],"public":[39,217],"repositories":[40,218],"(GenBank,":[41],"RefSeq,":[42],"the":[44,94,99,128,153,157,187,214,259],"European":[45],"Archive),":[47],"is":[49,170,211,245],"compatible":[50],"with":[51],"different":[52],"operating":[53],"systems":[54],"(Linux,":[55],"MacOS,":[56],"Microsoft":[58],"Windows)":[59],"programmatic":[62,220],"way":[63],"(command":[64],"line)":[65],"or":[66,73,98,120,240],"as":[67,156],"graphical":[69],"user":[70],"interface.":[71],"gSeqI":[74,189],"v1.0":[75],"should":[76],"help":[77],"users":[78],"get":[80],"some":[81],"queried":[84,103,163],"that":[86],"could":[87],"be":[88,107],"useful":[89],"for":[90,162,182],"specific":[91],"studies":[92],"(e.g.":[93],"country":[95],"origin/isolation":[97],"release":[100],"date":[101],"sequences).":[104],"Queries":[105],"can":[106],"made":[108],"retrieve":[110],"data":[112,226],"based":[113],"given":[116,123,144],"kingdom":[117],"species,":[119],"date.":[124],"This":[125],"program":[126,154,244],"separation":[129],"between":[130],"chromosomes":[131],"plasmids":[133],"(or":[134],"other":[135,191],"genetic":[136],"elements/components)":[137],"by":[138,152],"arranging":[139],"each":[140],"component":[141],"folder.":[145],"Some":[146],"basic":[147],"statistics":[148],"also":[150],"performed":[151],"(such":[155],"calculation":[158],"GC":[160],"content":[161],"assemblies).":[164],"An":[165],"empirically":[166],"designed":[167],"nucleotide":[168,173],"ratio":[169],"calculated":[171],"using":[172],"order":[176],"tentatively":[178],"provide":[179],"\"NucleScore\"":[181],"studied":[183],"genome":[184],"assemblies.":[185],"Besides":[186],"main":[188],"tool,":[190],"additional":[192],"tools":[193,254],"have":[194],"been":[195],"developed":[196],"perform":[198],"tasks":[200],"related":[201],"analysis.":[204],"CONCLUSION:":[205],"aim":[207],"this":[209],"study":[210],"democratize":[213],"use":[215],"ways,":[221],"facilitate":[224],"analysis":[227],"pedagogical":[230],"perspective.":[231],"Output":[232],"results":[233],"available":[235,247,257],"FASTA,":[237],"FASTQ,":[238],"Excel/TSV":[239],"HTML":[241],"formats.":[242],"freely":[246],"at:":[248],"https://github.com/karubiotools/getSequenceInfo":[249],".":[250],"supplementary":[253],"partly":[256],"through":[258],"recently":[260],"released":[261],"Galaxy":[262],"KaruBioNet":[263],"platform":[264],"(":[265],"http://calamar.univ-ag.fr/c3i/galaxy_karubionet.html":[266],").":[267]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-06-03T09:05:47.796612","created_date":"2025-10-10T00:00:00"}
