{"id":"https://openalex.org/W4289520891","doi":"https://doi.org/10.1186/s12859-022-04784-x","title":"In silico design of a multi-epitope vaccine against HPV16/18","display_name":"In silico design of a multi-epitope vaccine against HPV16/18","publication_year":2022,"publication_date":"2022-08-02","ids":{"openalex":"https://openalex.org/W4289520891","doi":"https://doi.org/10.1186/s12859-022-04784-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/35918631"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04784-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04784-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04784-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04784-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065145098","display_name":"Samira Sanami","orcid":"https://orcid.org/0000-0002-9647-1506"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Samira Sanami","raw_affiliation_strings":["Department of Medical Biotechnology, School of Advanced Technologies, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Biotechnology, School of Advanced Technologies, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066422379","display_name":"Mahmoud Rafieian\u2010Kopaei","orcid":"https://orcid.org/0000-0003-3190-7863"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mahmoud Rafieian-Kopaei","raw_affiliation_strings":["Medical Plants Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Plants Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021043401","display_name":"Korosh Ashrafi-Dehkordi","orcid":"https://orcid.org/0000-0001-7105-731X"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Korosh Ashrafi Dehkordi","raw_affiliation_strings":["Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024079750","display_name":"Hamidreza Pazoki\u2013Toroudi","orcid":"https://orcid.org/0000-0001-7868-456X"},"institutions":[{"id":"https://openalex.org/I161106909","display_name":"Iran University of Medical Sciences","ror":"https://ror.org/03w04rv71","country_code":"IR","type":"education","lineage":["https://openalex.org/I161106909"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hamidreza Pazoki-Toroudi","raw_affiliation_strings":["Department of Physiology, Faculty of Medicine, Iran University of Medical Sciences, Tehran, Iran","Physiology Research Center, Faculty of Medicine, Iran University of Medical Sciences, Tehran, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physiology, Faculty of Medicine, Iran University of Medical Sciences, Tehran, Iran","institution_ids":["https://openalex.org/I161106909"]},{"raw_affiliation_string":"Physiology Research Center, Faculty of Medicine, Iran University of Medical Sciences, Tehran, Iran","institution_ids":["https://openalex.org/I161106909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087417500","display_name":"Fatemeh Azadegan\u2010Dehkordi","orcid":"https://orcid.org/0000-0003-4469-8028"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Fatemeh Azadegan-Dehkordi","raw_affiliation_strings":["Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071967083","display_name":"Gholam Reza Mobini","orcid":"https://orcid.org/0000-0003-4859-8294"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Gholam-Reza Mobini","raw_affiliation_strings":["Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020029633","display_name":"Morteza Alizadeh","orcid":"https://orcid.org/0000-0003-4214-6502"},"institutions":[{"id":"https://openalex.org/I71736372","display_name":"Shahroud University of Medical Sciences","ror":"https://ror.org/023crty50","country_code":"IR","type":"education","lineage":["https://openalex.org/I71736372"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Morteza Alizadeh","raw_affiliation_strings":["Department of Tissue Engineering, School of Medicine, Shahroud University of Medical Sciences, Shahroud, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Tissue Engineering, School of Medicine, Shahroud University of Medical Sciences, Shahroud, Iran","institution_ids":["https://openalex.org/I71736372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023156964","display_name":"Muhammad Sadeqi Nezhad","orcid":"https://orcid.org/0000-0001-6244-385X"},"institutions":[{"id":"https://openalex.org/I4210117791","display_name":"Islamic Azad University of Gorgan","ror":"https://ror.org/02865ms07","country_code":"IR","type":"education","lineage":["https://openalex.org/I110525433","https://openalex.org/I4210117791"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Muhammad Sadeqi Nezhad","raw_affiliation_strings":["Department of Clinical Laboratory Science, Young Researchers and Elites Club, Gorgan Branch, Islamic Azad University, Gorg\u0101n, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory Science, Young Researchers and Elites Club, Gorgan Branch, Islamic Azad University, Gorg\u0101n, Iran","institution_ids":["https://openalex.org/I4210117791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083855312","display_name":"Maryam Ghasemi\u2010Dehnoo","orcid":"https://orcid.org/0000-0003-4899-8706"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Maryam Ghasemi-Dehnoo","raw_affiliation_strings":["Medical Plants Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Plants Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063738227","display_name":"Nader Bagheri","orcid":"https://orcid.org/0000-0001-5196-5513"},"institutions":[{"id":"https://openalex.org/I170350485","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76","country_code":"IR","type":"education","lineage":["https://openalex.org/I170350485"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Nader Bagheri","raw_affiliation_strings":["Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran. n.bagheri1985@gmail.com","Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran. n.bagheri1985@gmail.com","institution_ids":["https://openalex.org/I170350485"]},{"raw_affiliation_string":"Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran","institution_ids":["https://openalex.org/I170350485"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5063738227"],"corresponding_institution_ids":["https://openalex.org/I170350485"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.4416,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.94020294,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"23","issue":"1","first_page":"311","last_page":"311"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14463","display_name":"Diverse Scientific Research Studies","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8712611794471741},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5813174843788147},{"id":"https://openalex.org/keywords/antigenicity","display_name":"Antigenicity","score":0.5678223967552185},{"id":"https://openalex.org/keywords/adjuvant","display_name":"Adjuvant","score":0.5638824701309204},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.551845908164978},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5486534237861633},{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.5208121538162231},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4188067317008972},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36694836616516113},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2511501908302307},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14268112182617188},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09808158874511719}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8712611794471741},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5813174843788147},{"id":"https://openalex.org/C2779026604","wikidata":"https://www.wikidata.org/wiki/Q4774742","display_name":"Antigenicity","level":3,"score":0.5678223967552185},{"id":"https://openalex.org/C2777863537","wikidata":"https://www.wikidata.org/wiki/Q357896","display_name":"Adjuvant","level":2,"score":0.5638824701309204},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.551845908164978},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5486534237861633},{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.5208121538162231},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4188067317008972},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36694836616516113},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2511501908302307},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14268112182617188},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09808158874511719}],"mesh":[{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002583","descriptor_name":"Uterine Cervical Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018985","descriptor_name":"Epitopes, B-Lymphocyte","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D052161","descriptor_name":"Human papillomavirus 18","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052161","descriptor_name":"Human papillomavirus 18","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052161","descriptor_name":"Human papillomavirus 18","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D052162","descriptor_name":"Human papillomavirus 16","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052162","descriptor_name":"Human papillomavirus 16","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052162","descriptor_name":"Human papillomavirus 16","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04784-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04784-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04784-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35918631","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35918631","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:dd65046bcdc54815baa66708b06c67f5","is_oa":true,"landing_page_url":"https://doaj.org/article/dd65046bcdc54815baa66708b06c67f5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-24 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9344258","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9344258","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04784-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04784-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04784-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322969","display_name":"Shahrekord University","ror":"https://ror.org/051rngw70"},{"id":"https://openalex.org/F4320323418","display_name":"Shahrekord University of Medical Sciences","ror":"https://ror.org/0506tgm76"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4289520891.pdf","grobid_xml":"https://content.openalex.org/works/W4289520891.grobid-xml"},"referenced_works_count":95,"referenced_works":["https://openalex.org/W1031578623","https://openalex.org/W1516052100","https://openalex.org/W1624860839","https://openalex.org/W1675517407","https://openalex.org/W1863266496","https://openalex.org/W1899503782","https://openalex.org/W1963888311","https://openalex.org/W1975304761","https://openalex.org/W1978146796","https://openalex.org/W1987134040","https://openalex.org/W1987350137","https://openalex.org/W1990783476","https://openalex.org/W1991542542","https://openalex.org/W1992192767","https://openalex.org/W1995561333","https://openalex.org/W2001665793","https://openalex.org/W2001788009","https://openalex.org/W2002992774","https://openalex.org/W2003805630","https://openalex.org/W2006739412","https://openalex.org/W2007401297","https://openalex.org/W2010472402","https://openalex.org/W2012072946","https://openalex.org/W2012625502","https://openalex.org/W2014274241","https://openalex.org/W2016143490","https://openalex.org/W2017921754","https://openalex.org/W2029776745","https://openalex.org/W2035014358","https://openalex.org/W2035642539","https://openalex.org/W2036410619","https://openalex.org/W2037312364","https://openalex.org/W2042955728","https://openalex.org/W2046898357","https://openalex.org/W2049783958","https://openalex.org/W2055533988","https://openalex.org/W2057021995","https://openalex.org/W2061543974","https://openalex.org/W2062767336","https://openalex.org/W2064897680","https://openalex.org/W2075878132","https://openalex.org/W2080876451","https://openalex.org/W2083157454","https://openalex.org/W2084841120","https://openalex.org/W2095280081","https://openalex.org/W2095719702","https://openalex.org/W2099256260","https://openalex.org/W2099500226","https://openalex.org/W2100673208","https://openalex.org/W2102367710","https://openalex.org/W2106154817","https://openalex.org/W2108621249","https://openalex.org/W2108925141","https://openalex.org/W2110298304","https://openalex.org/W2120399005","https://openalex.org/W2127635589","https://openalex.org/W2131255017","https://openalex.org/W2132632010","https://openalex.org/W2133458779","https://openalex.org/W2137417707","https://openalex.org/W2154058033","https://openalex.org/W2155201844","https://openalex.org/W2160544821","https://openalex.org/W2164431424","https://openalex.org/W2171295581","https://openalex.org/W2290371181","https://openalex.org/W2338525980","https://openalex.org/W2408950280","https://openalex.org/W2561826764","https://openalex.org/W2572080171","https://openalex.org/W2581271646","https://openalex.org/W2587289248","https://openalex.org/W2590541852","https://openalex.org/W2594799040","https://openalex.org/W2616333630","https://openalex.org/W2748834817","https://openalex.org/W2751476102","https://openalex.org/W2761499335","https://openalex.org/W2767013407","https://openalex.org/W2783088490","https://openalex.org/W2802176098","https://openalex.org/W2900387277","https://openalex.org/W2904613252","https://openalex.org/W2922503279","https://openalex.org/W2946512810","https://openalex.org/W2953578491","https://openalex.org/W2967553667","https://openalex.org/W2993250673","https://openalex.org/W2999528154","https://openalex.org/W3033991307","https://openalex.org/W3089933642","https://openalex.org/W3155908830","https://openalex.org/W3165051958","https://openalex.org/W4235859326","https://openalex.org/W4244736178"],"related_works":["https://openalex.org/W2072925709","https://openalex.org/W2019183242","https://openalex.org/W2078042295","https://openalex.org/W3011182185","https://openalex.org/W2399733012","https://openalex.org/W2437539027","https://openalex.org/W2047187826","https://openalex.org/W1980021022","https://openalex.org/W2018608294","https://openalex.org/W2469766812"],"abstract_inverted_index":{"BACKGROUND:":[0],"Cervical":[1],"cancer":[2,8],"is":[3,12,266],"the":[4,55,114,142,149,155,170,178,194,204,212,244,258,263,288,305],"fourth":[5],"most":[6],"common":[7],"affecting":[9],"women":[10],"and":[11,84,95,103,161,169,181,274,280,291,301],"caused":[13],"by":[14,120,217],"human":[15],"Papillomavirus":[16],"(HPV)":[17],"infections":[18],"that":[19,30,193],"are":[20,24,51,284,296],"sexually":[21],"transmitted.":[22],"There":[23],"currently":[25],"commercially":[26],"available":[27],"prophylactic":[28],"vaccines":[29,43],"have":[31,44],"been":[32],"shown":[33],"to":[34,62,65,227,257,286],"protect":[35],"vaccinated":[36],"individuals":[37],"against":[38,73,318],"HPV":[39],"infections,":[40],"however,":[41],"these":[42],"no":[45],"therapeutic":[46,71,316],"effects":[47],"for":[48,141],"those":[49],"who":[50],"previously":[52],"infected":[53],"with":[54,70,203],"virus.":[56],"The":[57,145,163,183,208],"current":[58],"study's":[59],"aim":[60],"was":[61,136,157,167,175,215,223,247],"use":[63],"immunoinformatics":[64],"develop":[66],"a":[67,125,200,272,315],"multi-epitope":[68,245,264],"vaccine":[69,143,150,156,213,230,246,265,306,317],"potential":[72],"cervical":[74,319],"cancer.":[75,320],"RESULTS:":[76],"In":[77,123],"this":[78,309],"study,":[79],"T-cell":[80],"epitopes":[81,92,116,186],"from":[82,298],"E5":[83],"E7":[85],"proteins":[86],"of":[87,105,128,148,211,243,260],"HPV16/18":[88],"were":[89,93,117,152,187],"predicted.":[90,188],"These":[91],"evaluated":[94],"chosen":[96],"based":[97],"on":[98],"their":[99],"antigenicity,":[100],"allergenicity,":[101],"toxicity,":[102],"induction":[104],"IFN-\u03b3":[106],"production":[107],"(only":[108],"in":[109,225,232,240,278,281,299,302,308],"helper":[110],"T":[111],"lymphocytes).":[112],"Then,":[113],"selected":[115],"sequentially":[118],"linked":[119],"appropriate":[121],"linkers.":[122],"addition,":[124],"C-terminal":[126],"fragment":[127],"Mycobacterium":[129],"tuberculosis":[130],"heat":[131],"shock":[132],"protein":[133],"70":[134],"(HSP70)":[135],"used":[137],"as":[138,269,271,314],"an":[139],"adjuvant":[140],"construct.":[144],"physicochemical":[146],"parameters":[147],"construct":[151,214],"acceptable.":[153],"Furthermore,":[154],"soluble,":[158],"highly":[159],"antigenic,":[160],"non-allergenic.":[162],"vaccine's":[164,184,195,289],"3D":[165,197],"model":[166,198],"predicted,":[168],"structural":[171,209],"improvement":[172],"after":[173],"refinement":[174],"confirmed":[176,216],"using":[177],"Ramachandran":[179],"plot":[180],"ProSA-web.":[182],"B-cell":[185],"Molecular":[189],"docking":[190],"analysis":[191],"showed":[192],"refined":[196],"had":[199],"strong":[201],"interaction":[202],"Toll-like":[205],"receptor":[206],"4.":[207],"stability":[210],"molecular":[218],"dynamics":[219],"simulation.":[220],"Codon":[221],"adaptation":[222],"performed":[224],"order":[226],"achieve":[228],"efficient":[229],"expression":[231,253],"Escherichia":[233],"coli":[234],"strain":[235],"K12":[236],"(E.":[237],"coli).":[238],"Subsequently,":[239],"silico":[241],"cloning":[242],"conducted":[248],"into":[249],"pET-28a":[250],"(":[251],"+)":[252],"vector.":[254],"CONCLUSIONS:":[255],"According":[256],"results":[259,295],"bioinformatics":[261],"analyses,":[262],"structurally":[267],"stable,":[268],"well":[270],"non-allergic":[273],"non-toxic":[275],"antigen.":[276],"However,":[277],"vitro":[279,300],"vivo":[282,303],"studies":[283],"needed":[285],"validate":[287],"efficacy":[290],"safety.":[292],"If":[293],"satisfactory":[294],"obtained":[297],"studies,":[304],"designed":[307],"study":[310],"may":[311],"be":[312],"effective":[313]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
