{"id":"https://openalex.org/W4285044636","doi":"https://doi.org/10.1186/s12859-022-04758-z","title":"Joint deep learning for batch effect removal and classification toward MALDI MS based metabolomics","display_name":"Joint deep learning for batch effect removal and classification toward MALDI MS based metabolomics","publication_year":2022,"publication_date":"2022-07-10","ids":{"openalex":"https://openalex.org/W4285044636","doi":"https://doi.org/10.1186/s12859-022-04758-z","pmid":"https://pubmed.ncbi.nlm.nih.gov/35818047"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04758-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04758-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04758-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04758-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057967113","display_name":"Jingyang Niu","orcid":"https://orcid.org/0000-0002-7930-7210"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyang Niu","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101581104","display_name":"Jing Yang","orcid":"https://orcid.org/0000-0002-9530-196X"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Yang","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080516683","display_name":"Yuyu Guo","orcid":"https://orcid.org/0000-0002-1307-3546"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuyu Guo","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100728328","display_name":"Kun Qian","orcid":"https://orcid.org/0000-0003-1666-1965"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Qian","raw_affiliation_strings":["School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200030, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100390999","display_name":"Qian Wang","orcid":"https://orcid.org/0000-0001-6823-7897"},"institutions":[{"id":"https://openalex.org/I30809798","display_name":"ShanghaiTech University","ror":"https://ror.org/030bhh786","country_code":"CN","type":"education","lineage":["https://openalex.org/I30809798"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qian Wang","raw_affiliation_strings":["School of Biomedical Engineering, ShanghaiTech University, Shanghai, 201210, China. wangqian2@shanghaitech.edu.cn","School of Biomedical Engineering, ShanghaiTech University, Shanghai, 201210, China"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Engineering, ShanghaiTech University, Shanghai, 201210, China. wangqian2@shanghaitech.edu.cn","institution_ids":[]},{"raw_affiliation_string":"School of Biomedical Engineering, ShanghaiTech University, Shanghai, 201210, China","institution_ids":["https://openalex.org/I30809798"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100390999"],"corresponding_institution_ids":["https://openalex.org/I30809798"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6933,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.66613383,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"270","last_page":"270"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7101467847824097},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6990463733673096},{"id":"https://openalex.org/keywords/batch-processing","display_name":"Batch processing","score":0.6325816512107849},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5799671411514282},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.5003035068511963},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4708644449710846},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3728557229042053},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18450909852981567},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10138428211212158}],"concepts":[{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7101467847824097},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6990463733673096},{"id":"https://openalex.org/C172658912","wikidata":"https://www.wikidata.org/wiki/Q661613","display_name":"Batch processing","level":2,"score":0.6325816512107849},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5799671411514282},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.5003035068511963},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4708644449710846},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3728557229042053},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18450909852981567},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10138428211212158},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019032","descriptor_name":"Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04758-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04758-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04758-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35818047","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35818047","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:35e6bf29b7084ca2b91cfb5c388f13ee","is_oa":true,"landing_page_url":"https://doaj.org/article/35e6bf29b7084ca2b91cfb5c388f13ee","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-19 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9275160","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9275160","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04758-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04758-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04758-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4285044636.pdf","grobid_xml":"https://content.openalex.org/works/W4285044636.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W2003593019","https://openalex.org/W2021560851","https://openalex.org/W2038426170","https://openalex.org/W2049446938","https://openalex.org/W2062222093","https://openalex.org/W2064675550","https://openalex.org/W2096192437","https://openalex.org/W2100542429","https://openalex.org/W2107665951","https://openalex.org/W2137499573","https://openalex.org/W2139345901","https://openalex.org/W2147013674","https://openalex.org/W2150542002","https://openalex.org/W2159860161","https://openalex.org/W2161036742","https://openalex.org/W2346039638","https://openalex.org/W2409070137","https://openalex.org/W2555502666","https://openalex.org/W2893880892","https://openalex.org/W2980542459","https://openalex.org/W2985397232","https://openalex.org/W3012822544","https://openalex.org/W3021197281","https://openalex.org/W3042614271","https://openalex.org/W3206316397","https://openalex.org/W4206750494","https://openalex.org/W4206929935","https://openalex.org/W4207017358","https://openalex.org/W4207075225"],"related_works":["https://openalex.org/W4380075502","https://openalex.org/W4223943233","https://openalex.org/W4312200629","https://openalex.org/W4360585206","https://openalex.org/W4364306694","https://openalex.org/W4380086463","https://openalex.org/W4225161397","https://openalex.org/W3014300295","https://openalex.org/W3164822677","https://openalex.org/W2795261237"],"abstract_inverted_index":{"Both":[0],"experiments":[1],"conclude":[2],"that":[3],"our":[4],"method":[5],"performs":[6],"significantly":[7],"better":[8],"in":[9],"classification":[10],"than":[11],"conventional":[12],"methods":[13],"benefitting":[14],"from":[15],"the":[16],"effective":[17],"removal":[18],"of":[19],"batch":[20],"effect.":[21]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
