{"id":"https://openalex.org/W4281663499","doi":"https://doi.org/10.1186/s12859-022-04755-2","title":"GridScore: a tool for accurate, cross-platform phenotypic data collection and visualization","display_name":"GridScore: a tool for accurate, cross-platform phenotypic data collection and visualization","publication_year":2022,"publication_date":"2022-06-06","ids":{"openalex":"https://openalex.org/W4281663499","doi":"https://doi.org/10.1186/s12859-022-04755-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/35668357"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04755-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04755-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04755-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04755-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030755443","display_name":"Sebastian Raubach","orcid":"https://orcid.org/0000-0001-5659-247X"},"institutions":[{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Sebastian Raubach","raw_affiliation_strings":["Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland. sebastian.raubach@hutton.ac.uk","Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland"],"raw_orcid":"https://orcid.org/0000-0001-5659-247X","affiliations":[{"raw_affiliation_string":"Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland. sebastian.raubach@hutton.ac.uk","institution_ids":["https://openalex.org/I15477984"]},{"raw_affiliation_string":"Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland","institution_ids":["https://openalex.org/I15477984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020236433","display_name":"Miriam Schreiber","orcid":"https://orcid.org/0000-0002-3732-8822"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Miriam Schreiber","raw_affiliation_strings":["Department of Life Science, University of Dundee, Dundee, Scotland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Life Science, University of Dundee, Dundee, Scotland","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022489667","display_name":"Paul D. Shaw","orcid":"https://orcid.org/0000-0002-0202-1150"},"institutions":[{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul D. Shaw","raw_affiliation_strings":["Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, Scotland","institution_ids":["https://openalex.org/I15477984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5030755443"],"corresponding_institution_ids":["https://openalex.org/I15477984"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.5574,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.83437763,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"214","last_page":"214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.6284999847412109,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.6284999847412109,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10111","display_name":"Remote Sensing in Agriculture","score":0.05209999904036522,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12795","display_name":"Banana Cultivation and Research","score":0.021199999377131462,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.7637149691581726},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7132570743560791},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5617583990097046},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5300816297531128},{"id":"https://openalex.org/keywords/data-collection","display_name":"Data collection","score":0.5291517376899719},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44921237230300903},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4192297160625458},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.41727566719055176},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39439821243286133}],"concepts":[{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.7637149691581726},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7132570743560791},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5617583990097046},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5300816297531128},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.5291517376899719},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44921237230300903},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4192297160625458},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.41727566719055176},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39439821243286133},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04755-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04755-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04755-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35668357","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35668357","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire/421b6ab3-a0a5-49b4-8bd5-d115c58e3922","is_oa":true,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/421b6ab3-a0a5-49b4-8bd5-d115c58e3922","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Raubach, S, Schreiber, M & Shaw, P D 2022, 'GridScore : a tool for accurate, cross-platform phenotypic data collection and visualization', BMC Bioinformatics, vol. 23, 214. https://doi.org/10.1186/s12859-022-04755-2","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9169276","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9169276","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3bc0468487034e38a13e8b6d551778e6","is_oa":false,"landing_page_url":"https://doaj.org/article/3bc0468487034e38a13e8b6d551778e6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-8 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04755-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04755-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04755-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3631895576","display_name":null,"funder_award_id":"BB/S004610/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4799737505","display_name":"16 ERA-CAPS Barley yield associated networks","funder_award_id":"BB/S004610/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320312695","display_name":"Rural and Environment Science and Analytical Services Division","ror":null},{"id":"https://openalex.org/F4320313269","display_name":"Scottish Government","ror":"https://ror.org/04v2xmd71"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281663499.pdf","grobid_xml":"https://content.openalex.org/works/W4281663499.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1964470889","https://openalex.org/W1996130600","https://openalex.org/W2003205076","https://openalex.org/W2018749471","https://openalex.org/W2589599184","https://openalex.org/W2925510773","https://openalex.org/W2945510383","https://openalex.org/W3040201586","https://openalex.org/W4205579014"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2542318691","https://openalex.org/W2547096368","https://openalex.org/W2586219255"],"abstract_inverted_index":{"BACKGROUND:":[0],"Plant":[1],"breeding":[2],"and":[3,20,29,35,59,77,89,126,178],"crop":[4],"research":[5,34],"rely":[6],"on":[7],"experimental":[8],"phenotyping":[9,135,196],"trials.":[10],"These":[11],"trials":[12],"generate":[13],"data":[14,43,88,115,144,154],"for":[15,75,174],"large":[16],"numbers":[17],"of":[18,107,170],"traits":[19],"plant":[21,134],"varieties":[22],"that":[23,137],"needs":[24],"to":[25,31,103,163,182],"be":[26],"captured":[27],"efficiently":[28],"accurately":[30],"support":[32,173],"further":[33],"downstream":[36],"analysis.":[37],"Traditionally":[38],"scored":[39],"by":[40,118],"hand,":[41],"phenotypic":[42,114],"is":[44,130,161],"nowadays":[45],"collected":[46,155],"using":[47],"spreadsheets":[48],"or":[49],"specialized":[50],"apps.":[51],"While":[52],"many":[53],"solutions":[54],"exist,":[55],"which":[56,71,98],"increase":[57],"efficiency":[58],"reduce":[60],"errors,":[61],"none":[62],"offer":[63,78],"the":[64,83,105,113,153,190],"same":[65],"familiarity":[66,106],"as":[67],"printed":[68,108],"field":[69,109,158],"plans":[70,110],"have":[72],"been":[73],"used":[74],"decades":[76],"an":[79],"intuitive":[80],"overview":[81],"over":[82],"trial":[84],"setup,":[85],"previously":[86],"recorded":[87],"plots":[90],"still":[91],"requiring":[92],"scoring.":[93],"RESULTS:":[94],"We":[95],"introduce":[96],"GridScore":[97,129,160,185],"utilizes":[99],"cutting-edge":[100],"web":[101],"technologies":[102],"reproduce":[104],"while":[111,147],"enhancing":[112],"collection":[116,145],"process":[117],"adding":[119],"advanced":[120],"features":[121],"like":[122],"georeferencing,":[123],"image":[124],"tagging":[125],"speech":[127],"recognition.":[128],"a":[131,142,149,157,167,193],"cross-platform":[132],"open-source":[133],"app":[136],"combines":[138],"barcode-based":[139],"systems":[140],"with":[141],"guided":[143],"approach":[146],"offering":[148,192],"top-down":[150],"view":[151],"onto":[152],"in":[156],"layout.":[159],"compared":[162],"existing":[164],"tools":[165],"across":[166,189],"wide":[168],"spectrum":[169],"criteria":[171],"including":[172],"barcodes,":[175],"multiple":[176],"platforms,":[177],"visualizations.":[179],"CONCLUSION:":[180],"Compared":[181],"its":[183],"competition,":[184],"shows":[186],"strong":[187],"performance":[188],"board":[191],"complete":[194],"manual":[195],"experience.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":6},{"year":2023,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
