{"id":"https://openalex.org/W4281391475","doi":"https://doi.org/10.1186/s12859-022-04716-9","title":"CrisprVi: a software for visualizing and analyzing CRISPR sequences of prokaryotes","display_name":"CrisprVi: a software for visualizing and analyzing CRISPR sequences of prokaryotes","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4281391475","doi":"https://doi.org/10.1186/s12859-022-04716-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/35610585"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04716-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04716-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04716-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04716-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103273535","display_name":"Lei Sun","orcid":"https://orcid.org/0000-0002-8954-683X"},"institutions":[{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Lei Sun","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China. sunlei@yzu.edu.cn","Jiangsu Key Laboratory of Zoonosis, Yangzhou, People's Republic of China. sunlei@yzu.edu.cn","School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China. sunlei@yzu.edu.cn","School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China. sunlei@yzu.edu.cn","School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0002-8954-683X","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, People's Republic of China. sunlei@yzu.edu.cn","institution_ids":["https://openalex.org/I2801577699"]},{"raw_affiliation_string":"Jiangsu Key Laboratory of Zoonosis, Yangzhou, People's Republic of China. sunlei@yzu.edu.cn","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China. sunlei@yzu.edu.cn","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China. sunlei@yzu.edu.cn","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107865357","display_name":"Jinbiao Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinbiao Wang","raw_affiliation_strings":["School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110082043","display_name":"Yan Fu","orcid":"https://orcid.org/0000-0001-6896-5931"},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fu Yan","raw_affiliation_strings":["School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073264875","display_name":"Gongming Wang","orcid":"https://orcid.org/0000-0003-0453-4002"},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gongming Wang","raw_affiliation_strings":["School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369215","display_name":"Yun Li","orcid":"https://orcid.org/0000-0002-5849-5910"},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Li","raw_affiliation_strings":["Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou, People's Republic of China","School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Province Engineering Research Center of Knowledge Management and Intelligent Service, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Artificial Intelligence, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"School of Information Engineering, Yangzhou University, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050536898","display_name":"Jinlin Huang","orcid":"https://orcid.org/0000-0001-9447-3666"},"institutions":[{"id":"https://openalex.org/I78978612","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11","country_code":"CN","type":"education","lineage":["https://openalex.org/I78978612"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinlin Huang","raw_affiliation_strings":["Jiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonosis, Yangzhou, People's Republic of China","Jiangsu Key Laboratory of Zoonosis, Yangzhou, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangsu Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonosis, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]},{"raw_affiliation_string":"Jiangsu Key Laboratory of Zoonosis, Yangzhou, People's Republic of China","institution_ids":["https://openalex.org/I78978612"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103273535"],"corresponding_institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I78978612"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3465,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54782456,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"23","issue":"S3","first_page":"172","last_page":"172"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.8392000198364258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.8392000198364258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.04610000178217888,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.02280000038444996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crispr","display_name":"CRISPR","score":0.936920166015625},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7634484767913818},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.64394611120224},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5736921429634094},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5170679688453674},{"id":"https://openalex.org/keywords/palindrome","display_name":"Palindrome","score":0.5070736408233643},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4996304512023926},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.46420106291770935},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3533569574356079},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31096938252449036},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24917811155319214},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15431499481201172},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10635155439376831}],"concepts":[{"id":"https://openalex.org/C98108389","wikidata":"https://www.wikidata.org/wiki/Q412563","display_name":"CRISPR","level":3,"score":0.936920166015625},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7634484767913818},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.64394611120224},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5736921429634094},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5170679688453674},{"id":"https://openalex.org/C44667518","wikidata":"https://www.wikidata.org/wiki/Q12321","display_name":"Palindrome","level":4,"score":0.5070736408233643},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4996304512023926},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.46420106291770935},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3533569574356079},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31096938252449036},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24917811155319214},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15431499481201172},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10635155439376831}],"mesh":[{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011387","descriptor_name":"Prokaryotic Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064112","descriptor_name":"Clustered Regularly Interspaced Short Palindromic Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064113","descriptor_name":"CRISPR-Cas Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04716-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04716-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04716-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35610585","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35610585","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d45ffb501c7746a68d15afa6a12876f5","is_oa":true,"landing_page_url":"https://doaj.org/article/d45ffb501c7746a68d15afa6a12876f5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss S3, Pp 1-22 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9128103","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9128103","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04716-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04716-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-04716-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8683354263","display_name":null,"funder_award_id":"2018YFD0500500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8905603567","display_name":null,"funder_award_id":"BK20190878","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"}],"funders":[{"id":"https://openalex.org/F4320321605","display_name":"Government of Jiangsu Province","ror":"https://ror.org/004svx814"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324130","display_name":"Yangzhou University","ror":"https://ror.org/03tqb8s11"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281391475.pdf","grobid_xml":"https://content.openalex.org/works/W4281391475.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1940867534","https://openalex.org/W1977709885","https://openalex.org/W1984209790","https://openalex.org/W1991604124","https://openalex.org/W2011301426","https://openalex.org/W2050480410","https://openalex.org/W2055666215","https://openalex.org/W2060573994","https://openalex.org/W2062521268","https://openalex.org/W2067220993","https://openalex.org/W2074231493","https://openalex.org/W2096525273","https://openalex.org/W2114850508","https://openalex.org/W2127391962","https://openalex.org/W2134023754","https://openalex.org/W2134941170","https://openalex.org/W2135598273","https://openalex.org/W2137721714","https://openalex.org/W2142678478","https://openalex.org/W2166113462","https://openalex.org/W2169244146","https://openalex.org/W2229908198","https://openalex.org/W2239190724","https://openalex.org/W2342249984","https://openalex.org/W2399809721","https://openalex.org/W2429299904","https://openalex.org/W2476759866","https://openalex.org/W2556690262","https://openalex.org/W2797928483","https://openalex.org/W2803245377","https://openalex.org/W2888158317","https://openalex.org/W2898677375","https://openalex.org/W2940472313","https://openalex.org/W2981279305","https://openalex.org/W2995081665","https://openalex.org/W3035965352","https://openalex.org/W3099878876","https://openalex.org/W4230784961","https://openalex.org/W4237384074","https://openalex.org/W4243601081"],"related_works":["https://openalex.org/W4256679810","https://openalex.org/W2004311938","https://openalex.org/W2091512593","https://openalex.org/W4243873903","https://openalex.org/W2950606817","https://openalex.org/W4365999895","https://openalex.org/W2978271661","https://openalex.org/W2782139516","https://openalex.org/W4232796816","https://openalex.org/W2990696275"],"abstract_inverted_index":{"BACKGROUND:":[0],"Clustered":[1],"regularly":[2],"interspaced":[3],"short":[4],"palindromic":[5],"repeats":[6,89],"(CRISPR)":[7],"and":[8,30,61,66,72,91,102,115,127,147,155,169,207,212],"their":[9,95],"spacers":[10],"are":[11],"important":[12],"components":[13,128],"of":[14,25,48,86,129,157,165,173,191,224],"prokaryotic":[15],"CRISPR-Cas":[16,222],"systems.":[17],"In":[18,137],"order":[19],"to":[20,112,139,219],"analyze":[21],"the":[22,98,117,124,130,153,158,166,170,176,188,192,197,209],"CRISPR":[23,87,118,131,141,167,193,210],"loci":[24],"multiple":[26],"genomes":[27],"more":[28],"intuitively":[29],"comparatively,":[31],"here":[32],"we":[33],"propose":[34],"a":[35,44,49,56,73,134,183,202],"visualization":[36,142],"analysis":[37],"tool":[38,204],"named":[39],"CrisprVi.":[40],"RESULTS:":[41],"CrisprVi":[42,79,149,200],"is":[43,201],"Python":[45],"package":[46],"consisting":[47],"graphic":[50],"user":[51],"interface":[52],"(GUI)":[53],"for":[54,58,69,76,110,205,217],"visualization,":[55,159],"module":[57],"commands":[59],"parsing":[60],"data":[62,70,77],"transmission,":[63],"local":[64],"SQLite":[65],"BLAST":[67,189],"databases":[68],"storage":[71],"functions":[74],"layer":[75],"processing.":[78],"can":[80,179],"not":[81,150],"only":[82,151],"visually":[83],"present":[84],"information":[85],"direct":[88],"(DRs)":[90],"spacers,":[92],"such":[93,144],"as":[94,145],"orders":[96,126],"on":[97,187],"genome,":[99],"IDs,":[100],"start":[101],"end":[103],"coordinates,":[104],"but":[105,160],"also":[106,161],"provide":[107],"interactive":[108],"operation":[109],"users":[111,218],"display,":[113],"label":[114],"align":[116],"sequences,":[119,168],"which":[120],"help":[121],"researchers":[122],"investigate":[123],"locations,":[125],"sequences":[132,172,194,211],"in":[133],"global":[135],"view.":[136],"comparison":[138],"other":[140],"tools":[143],"CRISPRviz":[146],"CRISPRStudio,":[148],"improves":[152],"interactivity":[154],"effects":[156],"provides":[162],"basic":[163],"statistics":[164],"consensus":[171],"DRs/spacers":[174],"across":[175],"input":[177],"strains":[178],"be":[180,215],"inspected":[181],"from":[182],"clustering":[184],"heatmap":[185],"based":[186],"results":[190],"hitting":[195],"against":[196],"genomes.":[198],"CONCLUSIONS:":[199],"convenient":[203],"visualizing":[206],"analyzing":[208],"it":[213],"would":[214],"helpful":[216],"inspect":[220],"novel":[221],"systems":[223],"prokaryotes.":[225]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
