{"id":"https://openalex.org/W4280535276","doi":"https://doi.org/10.1186/s12859-022-04707-w","title":"CFVisual: an interactive desktop platform for drawing gene structure and protein architecture","display_name":"CFVisual: an interactive desktop platform for drawing gene structure and protein architecture","publication_year":2022,"publication_date":"2022-05-13","ids":{"openalex":"https://openalex.org/W4280535276","doi":"https://doi.org/10.1186/s12859-022-04707-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/35562653"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04707-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04707-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04707-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04707-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044662346","display_name":"Huilong Chen","orcid":"https://orcid.org/0000-0002-0535-9691"},"institutions":[{"id":"https://openalex.org/I132210918","display_name":"North China Institute of Science and Technology","ror":"https://ror.org/0096c7651","country_code":"CN","type":"education","lineage":["https://openalex.org/I132210918"]},{"id":"https://openalex.org/I137506752","display_name":"North China University of Science and Technology","ror":"https://ror.org/04z4wmb81","country_code":"CN","type":"education","lineage":["https://openalex.org/I137506752"]},{"id":"https://openalex.org/I4210157719","display_name":"Yancheng Institute of Technology","ror":"https://ror.org/04y8njc86","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210157719"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huilong Chen","raw_affiliation_strings":["School of Information Science and Technology, Yanching Institute of Technology, Langfang, 065000, Hebei, China","School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Yanching Institute of Technology, Langfang, 065000, Hebei, China","institution_ids":["https://openalex.org/I4210157719","https://openalex.org/I132210918"]},{"raw_affiliation_string":"School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China","institution_ids":["https://openalex.org/I137506752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054570515","display_name":"Xiaoming Song","orcid":"https://orcid.org/0000-0003-0084-3668"},"institutions":[{"id":"https://openalex.org/I137506752","display_name":"North China University of Science and Technology","ror":"https://ror.org/04z4wmb81","country_code":"CN","type":"education","lineage":["https://openalex.org/I137506752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoming Song","raw_affiliation_strings":["School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China","institution_ids":["https://openalex.org/I137506752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004222110","display_name":"Qian Shang","orcid":null},"institutions":[{"id":"https://openalex.org/I137506752","display_name":"North China University of Science and Technology","ror":"https://ror.org/04z4wmb81","country_code":"CN","type":"education","lineage":["https://openalex.org/I137506752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qian Shang","raw_affiliation_strings":["School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China","institution_ids":["https://openalex.org/I137506752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039890670","display_name":"Shuyan Feng","orcid":"https://orcid.org/0000-0003-0118-270X"},"institutions":[{"id":"https://openalex.org/I137506752","display_name":"North China University of Science and Technology","ror":"https://ror.org/04z4wmb81","country_code":"CN","type":"education","lineage":["https://openalex.org/I137506752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuyan Feng","raw_affiliation_strings":["School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China","institution_ids":["https://openalex.org/I137506752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069599547","display_name":"Weina Ge","orcid":"https://orcid.org/0000-0002-9148-5802"},"institutions":[{"id":"https://openalex.org/I137506752","display_name":"North China University of Science and Technology","ror":"https://ror.org/04z4wmb81","country_code":"CN","type":"education","lineage":["https://openalex.org/I137506752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weina Ge","raw_affiliation_strings":["School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China. gwn-06@163.com","School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China. gwn-06@163.com","institution_ids":["https://openalex.org/I137506752"]},{"raw_affiliation_string":"School of Life Science, North China University of Science and Technology, Tangshan, 063210, Hebei, China","institution_ids":["https://openalex.org/I137506752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069599547"],"corresponding_institution_ids":["https://openalex.org/I137506752"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.5911,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.96134593,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"178","last_page":"178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.15800000727176666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.15800000727176666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.15240000188350677,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09860000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.6316065192222595},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6188661456108093},{"id":"https://openalex.org/keywords/image-stitching","display_name":"Image stitching","score":0.5957592129707336},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.5441499948501587},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.47433963418006897},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4155752658843994},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39492130279541016},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2910664677619934},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24505239725112915},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2390650510787964},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23476403951644897},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19444265961647034}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.6316065192222595},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6188661456108093},{"id":"https://openalex.org/C29081049","wikidata":"https://www.wikidata.org/wiki/Q1364242","display_name":"Image stitching","level":2,"score":0.5957592129707336},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.5441499948501587},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47433963418006897},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4155752658843994},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39492130279541016},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2910664677619934},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24505239725112915},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2390650510787964},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23476403951644897},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19444265961647034},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04707-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04707-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04707-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35562653","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35562653","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:804acdd56bb84ee58c943b236db45145","is_oa":true,"landing_page_url":"https://doaj.org/article/804acdd56bb84ee58c943b236db45145","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-8 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9102596","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9102596","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04707-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04707-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04707-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4280535276.pdf","grobid_xml":"https://content.openalex.org/works/W4280535276.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2035908878","https://openalex.org/W2037993016","https://openalex.org/W2102652793","https://openalex.org/W2119205648","https://openalex.org/W2138098955","https://openalex.org/W2147526198","https://openalex.org/W2157009395","https://openalex.org/W2799524357","https://openalex.org/W3093868212","https://openalex.org/W3105145503","https://openalex.org/W4205894545","https://openalex.org/W4210514402"],"related_works":["https://openalex.org/W68020613","https://openalex.org/W2091466534","https://openalex.org/W4255291540","https://openalex.org/W3134240150","https://openalex.org/W4387591196","https://openalex.org/W172825421","https://openalex.org/W2944699522","https://openalex.org/W3156165453","https://openalex.org/W4384702767","https://openalex.org/W1982521527"],"abstract_inverted_index":{"BACKGROUND:":[0],"When":[1],"researchers":[2,149,168],"perform":[3],"gene":[4,75,86,125,173],"family":[5,126],"analysis,":[6],"they":[7],"often":[8,45],"analyze":[9],"the":[10,14,18,25,58,83,102,114,156,170],"structural":[11,29],"characteristics":[12],"of":[13,20,31,105,113,172],"gene,":[15],"such":[16],"as":[17,163],"distribution":[19],"introns":[21],"and":[22,41,77,88,94,135,150,175],"exons.":[23],"At":[24],"same":[26],"time,":[27],"characteristic":[28],"analysis":[30,116],"amino":[32],"acid":[33],"sequence":[34],"is":[35,136],"also":[36,109],"essential,":[37],"for":[38,61,73,167],"example,":[39],"motif":[40],"domain":[42],"features.":[43],"Researchers":[44],"integrate":[46],"these":[47],"analyses":[48],"into":[49],"one":[50,92],"image":[51],"to":[52,161],"dig":[53],"out":[54],"more":[55],"information,":[56],"but":[57],"tools":[59],"responsible":[60],"this":[62],"integration":[63],"are":[64],"lacking.":[65],"RESULTS:":[66],"Here,":[67],"we":[68],"developed":[69],"a":[70,121,164],"tool":[71],"(CFVisual)":[72],"drawing":[74],"structure":[76,174],"protein":[78,89,176],"architecture.":[79,177],"CFVisual":[80,129,143,158],"can":[81,100],"draw":[82],"phylogenetic":[84],"tree,":[85],"structure,":[87],"architecture":[90],"in":[91,124,133,169],"picture,":[93],"has":[95,119,144],"rich":[96],"interactive":[97],"capabilities,":[98],"which":[99],"meet":[101],"work":[103],"needs":[104],"researchers.":[106],"Furthermore,":[107],"it":[108],"supports":[110],"arbitrary":[111],"stitching":[112],"above":[115],"images.":[117],"It":[118],"become":[120],"useful":[122],"helper":[123,166],"analysis.":[127],"The":[128],"package":[130],"was":[131],"implemented":[132],"Python":[134],"freely":[137],"available":[138],"from":[139],"https://github.com/ChenHuilong1223/CFVisual/":[140],".":[141],"CONCLUSION:":[142],"been":[145],"used":[146],"by":[147,152],"some":[148,153],"cited":[151],"articles.":[154],"In":[155],"future,":[157],"will":[159],"continue":[160],"serve":[162],"good":[165],"study":[171]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}