{"id":"https://openalex.org/W4229031330","doi":"https://doi.org/10.1186/s12859-022-04702-1","title":"A deep learning approach for orphan gene identification in moso bamboo (Phyllostachys edulis) based on the CNN\u2009+\u2009Transformer model","display_name":"A deep learning approach for orphan gene identification in moso bamboo (Phyllostachys edulis) based on the CNN\u2009+\u2009Transformer model","publication_year":2022,"publication_date":"2022-05-05","ids":{"openalex":"https://openalex.org/W4229031330","doi":"https://doi.org/10.1186/s12859-022-04702-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/35513802"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04702-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04702-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04702-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04702-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100356745","display_name":"Xiaodan Zhang","orcid":"https://orcid.org/0000-0001-8192-0666"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaodan Zhang","raw_affiliation_strings":["Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043142532","display_name":"Jinxiang Xuan","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinxiang Xuan","raw_affiliation_strings":["Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089588347","display_name":"Chensong Yao","orcid":null},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chensong Yao","raw_affiliation_strings":["Graduate School, Anhui Agricultural University, Hefei, 230036, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School, Anhui Agricultural University, Hefei, 230036, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054680322","display_name":"Qijuan Gao","orcid":"https://orcid.org/0000-0002-1118-1922"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qijuan Gao","raw_affiliation_strings":["Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050632045","display_name":"Lianglong Wang","orcid":"https://orcid.org/0000-0002-0667-7755"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lianglong Wang","raw_affiliation_strings":["Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]},{"raw_affiliation_string":"College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064144631","display_name":"Xiu Jin","orcid":"https://orcid.org/0000-0002-0827-2962"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiu Jin","raw_affiliation_strings":["Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China. jinxiu123@ahau.edu.cn","College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China. jinxiu123@ahau.edu.cn","Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China. jinxiu123@ahau.edu.cn","institution_ids":[]},{"raw_affiliation_string":"College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China. jinxiu123@ahau.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103075590","display_name":"Shaowen Li","orcid":"https://orcid.org/0000-0002-4140-9297"},"institutions":[{"id":"https://openalex.org/I140221134","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359","country_code":"CN","type":"education","lineage":["https://openalex.org/I140221134"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaowen Li","raw_affiliation_strings":["Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China. liahau@163.com","College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China. liahau@163.com","College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Smart Agricultural Technology and Equipment, Anhui Agriculture University, Hefei, 230001, China. liahau@163.com","institution_ids":[]},{"raw_affiliation_string":"College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China. liahau@163.com","institution_ids":[]},{"raw_affiliation_string":"College of Information and Computer Science, Anhui Agricultural University, Hefei, 230001, China","institution_ids":["https://openalex.org/I140221134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100356745"],"corresponding_institution_ids":["https://openalex.org/I140221134"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.1504,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.90871302,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"162","last_page":"162"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12665","display_name":"Bamboo properties and applications","score":0.3718000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12665","display_name":"Bamboo properties and applications","score":0.3718000054359436,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13568","display_name":"Wood and Agarwood Research","score":0.16539999842643738,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13142","display_name":"GABA and Rice Research","score":0.024299999698996544,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phyllostachys-edulis","display_name":"Phyllostachys edulis","score":0.8836504220962524},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.7508647441864014},{"id":"https://openalex.org/keywords/bamboo","display_name":"Bamboo","score":0.7265269756317139},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6139132976531982},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5905795097351074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5754190683364868},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5496828556060791},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4509279131889343},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4458824694156647},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32441598176956177},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2813003659248352},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1680850386619568},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.12940776348114014}],"concepts":[{"id":"https://openalex.org/C2779213740","wikidata":"https://www.wikidata.org/wiki/Q1330347","display_name":"Phyllostachys edulis","level":3,"score":0.8836504220962524},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.7508647441864014},{"id":"https://openalex.org/C2778704284","wikidata":"https://www.wikidata.org/wiki/Q670887","display_name":"Bamboo","level":2,"score":0.7265269756317139},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6139132976531982},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5905795097351074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5754190683364868},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5496828556060791},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4509279131889343},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4458824694156647},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32441598176956177},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2813003659248352},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1680850386619568},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.12940776348114014},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006109","descriptor_name":"Poaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04702-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04702-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04702-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35513802","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35513802","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6834f78f92044a6c84d435f2eda2279f","is_oa":true,"landing_page_url":"https://doaj.org/article/6834f78f92044a6c84d435f2eda2279f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-19 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9069780","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9069780","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04702-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04702-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04702-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4229031330.pdf","grobid_xml":"https://content.openalex.org/works/W4229031330.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1478648646","https://openalex.org/W1963749132","https://openalex.org/W1972824771","https://openalex.org/W1988485432","https://openalex.org/W2046085083","https://openalex.org/W2050077513","https://openalex.org/W2055043387","https://openalex.org/W2056699111","https://openalex.org/W2059223767","https://openalex.org/W2092776658","https://openalex.org/W2107519392","https://openalex.org/W2108492781","https://openalex.org/W2109636763","https://openalex.org/W2127673162","https://openalex.org/W2128689695","https://openalex.org/W2132009717","https://openalex.org/W2132706594","https://openalex.org/W2141292707","https://openalex.org/W2159482845","https://openalex.org/W2161153002","https://openalex.org/W2165118109","https://openalex.org/W2173312143","https://openalex.org/W2433743436","https://openalex.org/W2736280136","https://openalex.org/W2766191963","https://openalex.org/W2885583144","https://openalex.org/W2889887734","https://openalex.org/W2891563800","https://openalex.org/W2900903885","https://openalex.org/W2916877561","https://openalex.org/W2918408501","https://openalex.org/W2919115771","https://openalex.org/W2958612150","https://openalex.org/W2963347351","https://openalex.org/W2968199443","https://openalex.org/W2969718750","https://openalex.org/W2980141724","https://openalex.org/W2998559844","https://openalex.org/W2999309192","https://openalex.org/W3000237001","https://openalex.org/W3025339916","https://openalex.org/W3036973367","https://openalex.org/W3085184829","https://openalex.org/W3096828292","https://openalex.org/W3162780970","https://openalex.org/W3170841864","https://openalex.org/W3171169846","https://openalex.org/W3213342912","https://openalex.org/W4243272828","https://openalex.org/W4294216483","https://openalex.org/W6628753890","https://openalex.org/W6780226713"],"related_works":["https://openalex.org/W2372427654","https://openalex.org/W2357608597","https://openalex.org/W4308105899","https://openalex.org/W3000572447","https://openalex.org/W3124167947","https://openalex.org/W3200418527","https://openalex.org/W2352731851","https://openalex.org/W2773154351","https://openalex.org/W2390188575","https://openalex.org/W4226493464"],"abstract_inverted_index":{"BACKGROUND:":[0],"Orphan":[1],"gene":[2],"play":[3],"an":[4],"important":[5],"role":[6],"in":[7,90,99,117,205,249],"the":[8,38,56,125,142,153,157,171,196,199,217,236,241],"environmental":[9],"stresses":[10],"of":[11,40,58,69,130,170,189],"many":[12],"species":[13],"and":[14,31,53,60,111,141,167,181,215],"their":[15],"identification":[16,204],"is":[17,43,68,213,235],"a":[18,78,95,102],"critical":[19],"step":[20],"to":[21,106,239],"understand":[22],"biological":[23],"functions.":[24],"Moso":[25],"bamboo":[26,42,136],"has":[27,198],"high":[28],"ecological,":[29],"economic":[30],"cultural":[32],"value.":[33],"Studies":[34],"have":[35],"shown":[36],"that":[37,124,195],"growth":[39],"moso":[41,91,135,206],"influenced":[44],"by":[45],"various":[46],"stresses.":[47],"Several":[48],"traditional":[49],"methods":[50,63],"are":[51,184],"time-consuming":[52],"inefficient.":[54],"Hence,":[55],"development":[57],"efficient":[59],"high-accuracy":[61],"computational":[62],"for":[64,86,202,227,245],"predicting":[65],"orphan":[66,88,247],"genes":[67,89,248],"great":[70],"significance.":[71],"RESULTS:":[72],"In":[73],"this":[74,234],"paper,":[75],"we":[76],"propose":[77],"novel":[79],"deep":[80,242],"learning":[81,243],"model":[82,197,212,238],"(CNN":[83],"+":[84,132,191,210],"Transformer)":[85],"identifying":[87,246],"bamboo.":[92,207],"It":[93,221],"uses":[94],"convolutional":[96],"neural":[97,104,173],"network":[98,105],"combination":[100],"with":[101],"transformer":[103,182],"capture":[107],"k-mer":[108,114],"amino":[109,115],"acids":[110,116],"features":[112],"between":[113],"protein":[118],"sequences.":[119],"The":[120],"experimental":[121],"results":[122],"show":[123],"average":[126,143],"balance":[127],"accuracy":[128],"value":[129,148],"CNN":[131,190,209],"Transformer":[133,211],"on":[134],"dataset":[137],"can":[138,149],"reach":[139,150],"0.875,":[140],"Matthews":[144],"Correlation":[145],"Coefficient":[146],"(MCC)":[147],"0.471.":[151],"For":[152],"same":[154],"testing":[155],"set,":[156],"Balance":[158],"Accuracy":[159],"(BA),":[160],"Geometric":[161],"Mean":[162],"(GM),":[163],"Bookmaker":[164],"Informedness":[165],"(BM),":[166],"MCC":[168],"values":[169],"recurrent":[172,179],"network,":[174],"long":[175],"short-term":[176],"memory,":[177],"gated":[178],"unit,":[180],"models":[183],"all":[185],"lower":[186],"than":[187],"those":[188],"Transformer,":[192],"which":[193],"indicated":[194],"extensive":[200],"ability":[201],"OG":[203],"CONCLUSIONS:":[208],"feasible":[214],"obtains":[216],"credible":[218],"predictive":[219],"results.":[220],"may":[222],"also":[223],"provide":[224],"valuable":[225],"references":[226],"other":[228],"related":[229],"research.":[230],"As":[231],"our":[232],"knowledge,":[233],"first":[237],"adopt":[240],"techniques":[244],"plants.":[250]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
