{"id":"https://openalex.org/W4224313526","doi":"https://doi.org/10.1186/s12859-022-04680-4","title":"Application of unsupervised deep learning algorithms for identification of specific clusters of chronic cough patients from EMR data","display_name":"Application of unsupervised deep learning algorithms for identification of specific clusters of chronic cough patients from EMR data","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4224313526","doi":"https://doi.org/10.1186/s12859-022-04680-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/35439945"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04680-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04680-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04680-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04680-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101923611","display_name":"Wei Shao","orcid":"https://orcid.org/0000-0002-9401-1186"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Shao","raw_affiliation_strings":["Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","Indiana University School of Medicine, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038978057","display_name":"Xiao Luo","orcid":"https://orcid.org/0000-0002-3649-9785"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiao Luo","raw_affiliation_strings":["Purdue School of Engineering and Technology, IUPUI, ET 301L, 799 W. Michigan Street, Indianapolis, IN, 46202, USA. luo25@iupui.edu","Purdue School of Engineering and Technology, IUPUI, Indianapolis, USA"],"raw_orcid":"https://orcid.org/0000-0002-3649-9785","affiliations":[{"raw_affiliation_string":"Purdue School of Engineering and Technology, IUPUI, ET 301L, 799 W. Michigan Street, Indianapolis, IN, 46202, USA. luo25@iupui.edu","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Purdue School of Engineering and Technology, IUPUI, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070449447","display_name":"Zuoyi Zhang","orcid":"https://orcid.org/0000-0002-9039-5418"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zuoyi Zhang","raw_affiliation_strings":["Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","Indiana University School of Medicine, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018421117","display_name":"Zhi Han","orcid":"https://orcid.org/0000-0002-5603-8433"},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhi Han","raw_affiliation_strings":["Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","Regenstrief Institute, Inc., Indianapolis, IN, USA","Regenstrief Institute, Inc., Indianapolis, USA","Indiana University School of Medicine, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077466279","display_name":"Vasu Chandrasekaran","orcid":null},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vasu Chandrasekaran","raw_affiliation_strings":["Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","institution_ids":["https://openalex.org/I1285764155"]},{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017265970","display_name":"Vladimir Turzhitsky","orcid":"https://orcid.org/0000-0001-8610-8730"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladimir Turzhitsky","raw_affiliation_strings":["Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","institution_ids":["https://openalex.org/I1285764155"]},{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070430100","display_name":"Vishal Bali","orcid":"https://orcid.org/0009-0000-0058-8180"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vishal Bali","raw_affiliation_strings":["Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","institution_ids":["https://openalex.org/I1285764155"]},{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032354498","display_name":"Anna Roberts","orcid":"https://orcid.org/0000-0002-6675-2761"},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna R. Roberts","raw_affiliation_strings":["Regenstrief Institute, Inc., Indianapolis, IN, USA","Regenstrief Institute, Inc., Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, USA","institution_ids":["https://openalex.org/I1324682000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058596334","display_name":"Megan Metzger","orcid":"https://orcid.org/0009-0005-6718-2974"},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Megan Metzger","raw_affiliation_strings":["Regenstrief Institute, Inc., Indianapolis, IN, USA","Regenstrief Institute, Inc., Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, USA","institution_ids":["https://openalex.org/I1324682000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103934082","display_name":"Jarod Baker","orcid":null},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jarod Baker","raw_affiliation_strings":["Regenstrief Institute, Inc., Indianapolis, IN, USA","Regenstrief Institute, Inc., Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, USA","institution_ids":["https://openalex.org/I1324682000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051189755","display_name":"Carmen La Rosa","orcid":null},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carmen La Rosa","raw_affiliation_strings":["Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","institution_ids":["https://openalex.org/I1285764155"]},{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018602192","display_name":"Jessica Weaver","orcid":"https://orcid.org/0000-0002-9861-3328"},"institutions":[{"id":"https://openalex.org/I1285764155","display_name":"Merck & Co., Inc., Rahway, NJ, USA (United States)","ror":"https://ror.org/02891sr49","country_code":"US","type":"company","lineage":["https://openalex.org/I1285764155"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica Weaver","raw_affiliation_strings":["Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, NJ, USA","institution_ids":["https://openalex.org/I1285764155"]},{"raw_affiliation_string":"Center for Observational and Real-World Evidence, Merck & Co., Inc., Kenilworth, USA","institution_ids":["https://openalex.org/I1285764155"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023949037","display_name":"Paul Dexter","orcid":"https://orcid.org/0000-0002-0399-0156"},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]},{"id":"https://openalex.org/I4210130353","display_name":"Eskenazi Health Foundation","ror":"https://ror.org/0391w8d97","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210130353"]},{"id":"https://openalex.org/I4387930283","display_name":"Eskenazi Health","ror":"https://ror.org/0046t1019","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4210130353","https://openalex.org/I4387930232","https://openalex.org/I4387930283"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Dexter","raw_affiliation_strings":["Eskenazi Health, Indianapolis, IN, USA","Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","Regenstrief Institute, Inc., Indianapolis, IN, USA","Regenstrief Institute, Inc., Indianapolis, USA","Indiana University School of Medicine, Indianapolis, USA","Eskenazi Health, Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eskenazi Health, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I4210130353","https://openalex.org/I4387930283"]},{"raw_affiliation_string":"Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA","institution_ids":["https://openalex.org/I4394709130","https://openalex.org/I55769427"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, IN, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, USA","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Eskenazi Health, Indianapolis, USA","institution_ids":["https://openalex.org/I4210130353","https://openalex.org/I4387930283"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057366605","display_name":"Kun Huang","orcid":"https://orcid.org/0000-0002-8530-370X"},"institutions":[{"id":"https://openalex.org/I1324682000","display_name":"Regenstrief Institute","ror":"https://ror.org/05f2ywb48","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1324682000"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kun Huang","raw_affiliation_strings":["Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA. kunhuang@iu.edu","Regenstrief Institute, Inc., Indianapolis, IN, USA. kunhuang@iu.edu","Indiana University School of Medicine, Indianapolis, USA","Regenstrief Institute, Inc., Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Indiana University School of Medicine, 1101 W 10th Street, Indianapolis, IN, 46202, USA. kunhuang@iu.edu","institution_ids":["https://openalex.org/I55769427"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, IN, USA. kunhuang@iu.edu","institution_ids":["https://openalex.org/I1324682000"]},{"raw_affiliation_string":"Indiana University School of Medicine, Indianapolis, USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Regenstrief Institute, Inc., Indianapolis, USA","institution_ids":["https://openalex.org/I1324682000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5038978057","https://openalex.org/A5057366605"],"corresponding_institution_ids":["https://openalex.org/I1324682000","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.907,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.74156982,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"23","issue":"S3","first_page":"140","last_page":"140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12418","display_name":"Respiratory and Cough-Related Research","score":0.7207000255584717,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12418","display_name":"Respiratory and Cough-Related Research","score":0.7207000255584717,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.08209999650716782,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11775","display_name":"COVID-19 diagnosis using AI","score":0.02630000002682209,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6236435174942017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5603947639465332},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5450764298439026},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5097491145133972},{"id":"https://openalex.org/keywords/unsupervised-learning","display_name":"Unsupervised learning","score":0.5066412091255188},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40671491622924805},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3828313946723938},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3825245499610901},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18571054935455322},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08606967329978943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0795665979385376}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6236435174942017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5603947639465332},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5450764298439026},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5097491145133972},{"id":"https://openalex.org/C8038995","wikidata":"https://www.wikidata.org/wiki/Q1152135","display_name":"Unsupervised learning","level":2,"score":0.5066412091255188},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40671491622924805},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3828313946723938},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3825245499610901},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18571054935455322},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08606967329978943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0795665979385376},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003371","descriptor_name":"Cough","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003371","descriptor_name":"Cough","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003371","descriptor_name":"Cough","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04680-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04680-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04680-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35439945","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35439945","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/33419","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/33419","pdf_url":"https://scholarworks.indianapolis.iu.edu/bitstreams/3e298f7d-a9ca-4dba-9e08-d6fbf6bce29c/download","source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:8b759c9819874e638135b331656de33b","is_oa":true,"landing_page_url":"https://doaj.org/article/8b759c9819874e638135b331656de33b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss S3, Pp 1-14 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9019947","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9019947","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04680-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04680-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04680-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332932","display_name":"Merck Sharp and Dohme","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4224313526.pdf","grobid_xml":"https://content.openalex.org/works/W4224313526.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1175355699","https://openalex.org/W1548779692","https://openalex.org/W1931168873","https://openalex.org/W1977861794","https://openalex.org/W1980867644","https://openalex.org/W1987971958","https://openalex.org/W1994728074","https://openalex.org/W2014047851","https://openalex.org/W2022582862","https://openalex.org/W2057921889","https://openalex.org/W2086859945","https://openalex.org/W2088140593","https://openalex.org/W2088200309","https://openalex.org/W2099454051","https://openalex.org/W2117880240","https://openalex.org/W2123581469","https://openalex.org/W2137678441","https://openalex.org/W2146630627","https://openalex.org/W2285678238","https://openalex.org/W2404901863","https://openalex.org/W2419092530","https://openalex.org/W2511950764","https://openalex.org/W2616400140","https://openalex.org/W2766407637","https://openalex.org/W2900984600","https://openalex.org/W2901116465","https://openalex.org/W2915964757","https://openalex.org/W2950722229","https://openalex.org/W2963561234","https://openalex.org/W2996824246","https://openalex.org/W4210262148","https://openalex.org/W4236946234"],"related_works":["https://openalex.org/W3196155444","https://openalex.org/W328659180","https://openalex.org/W4321844043","https://openalex.org/W3210156800","https://openalex.org/W4390062853","https://openalex.org/W4297883248","https://openalex.org/W3209574120","https://openalex.org/W4255830763","https://openalex.org/W1583266947","https://openalex.org/W4286799911"],"abstract_inverted_index":{"BACKGROUND:":[0],"Chronic":[1],"cough":[2,15,30,38,58,121,127,141,146,161,167,172,177,190,215],"affects":[3],"approximately":[4],"10%":[5],"of":[6,10,28,36,56,67,96,175,183,196,208],"adults.":[7],"The":[8,130],"lack":[9],"ICD":[11],"codes":[12],"for":[13,213,226],"chronic":[14,29,37,57,120,140,160,166,176,189,214],"makes":[16],"it":[17],"challenging":[18],"to":[19,24,53,100,117,124,204],"apply":[20],"supervised":[21],"learning":[22,211],"methods":[23,212],"predict":[25],"the":[26,34,71,81,84,97,114,119,125,135,165,170,194,202,206],"characteristics":[27],"patients,":[31],"thereby":[32],"requiring":[33],"identification":[35],"patients":[39,59,69,122,162],"by":[40,163],"other":[41],"mechanisms.":[42],"We":[43,77,149],"developed":[44],"a":[45,64,88,220],"deep":[46,98,210],"clustering":[47],"algorithm":[48],"with":[49,159,169],"auto-encoder":[50],"embedding":[51],"(DCAE)":[52],"identify":[54],"clusters":[55,116,142,178],"based":[60],"on":[61,93,113],"data":[62,228],"from":[63,70],"large":[65],"cohort":[66],"264,146":[68],"Electronic":[72],"Medical":[73],"Records":[74],"(EMR)":[75],"system.":[76],"constructed":[78],"features":[79,95],"using":[80],"diagnosis":[82],"within":[83],"EMR,":[85],"then":[86],"built":[87],"clustering-oriented":[89],"loss":[90],"function":[91],"directly":[92],"embedded":[94],"autoencoder":[99],"jointly":[101],"perform":[102],"feature":[103],"refinement":[104],"and":[105,143,154,185],"cluster":[106,168],"assignment.":[107],"Lastly,":[108],"we":[109],"performed":[110],"statistical":[111],"analysis":[112],"identified":[115],"characterize":[118,187],"compared":[123],"non-chronic":[126,145,171],"patients.":[128],"RESULTS:":[129],"experimental":[131],"results":[132],"show":[133],"that":[134,180],"DCAE":[136],"model":[137],"generated":[138],"three":[139],"one":[144],"patient":[147,227],"cluster.":[148,173],"found":[150],"various":[151],"diagnoses,":[152],"medications,":[153],"lab":[155],"tests":[156],"highly":[157],"associated":[158],"comparing":[164],"Comparison":[174],"demonstrated":[179],"certain":[181],"combinations":[182],"medications":[184],"diagnoses":[186],"some":[188],"clusters.":[191],"CONCLUSIONS:":[192],"To":[193],"best":[195],"our":[197],"knowledge,":[198],"this":[199],"study":[200],"is":[201],"first":[203],"test":[205],"potential":[207],"unsupervised":[209],"investigation,":[216],"which":[217],"also":[218],"shows":[219],"great":[221],"advantage":[222],"over":[223],"existing":[224],"algorithms":[225],"clustering.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
