{"id":"https://openalex.org/W4224316085","doi":"https://doi.org/10.1186/s12859-022-04668-0","title":"MALVIRUS: an integrated application for viral variant analysis","display_name":"MALVIRUS: an integrated application for viral variant analysis","publication_year":2022,"publication_date":"2022-04-19","ids":{"openalex":"https://openalex.org/W4224316085","doi":"https://doi.org/10.1186/s12859-022-04668-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/35439933"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04668-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04668-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04668-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04668-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048411377","display_name":"Simone Ciccolella","orcid":"https://orcid.org/0000-0002-6469-4887"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Ciccolella","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030595155","display_name":"Luca Denti","orcid":"https://orcid.org/0000-0001-8786-2276"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["FR","IT"],"is_corresponding":false,"raw_author_name":"Luca Denti","raw_affiliation_strings":["Department of Computational Biology, Institut Pasteur, 25-28 Rue du Dr Roux, 75015, Paris, France","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","Department of Computational Biology, Institut Pasteur, Paris, France"],"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, Institut Pasteur, 25-28 Rue du Dr Roux, 75015, Paris, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Computational Biology, Institut Pasteur, Paris, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038691764","display_name":"Paola Bonizzoni","orcid":"https://orcid.org/0000-0001-7289-4988"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paola Bonizzoni","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059679442","display_name":"Gianluca Della Vedova","orcid":"https://orcid.org/0000-0001-5584-3089"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gianluca Della Vedova","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079127373","display_name":"Yuri Pirola","orcid":"https://orcid.org/0000-0002-8479-7592"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Yuri Pirola","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy. yuri.pirola@unimib.it","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy. yuri.pirola@unimib.it","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103118099","display_name":"Marco Previtali","orcid":"https://orcid.org/0000-0003-3040-9539"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Previtali","raw_affiliation_strings":["Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, 20136, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]},{"raw_affiliation_string":"Department of Informatics, Systems and Communication, University of Milano-Bicocca, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5079127373"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1849,"currency":"EUR","value_usd":1994},"fwci":0.5046,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62807199,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"22","issue":"S15","first_page":"625","last_page":"625"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.721304178237915},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6226388216018677},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.5515791773796082},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5093075037002563},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49029138684272766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4651279151439667},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45205092430114746},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4475496709346771},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44672051072120667},{"id":"https://openalex.org/keywords/minion","display_name":"Minion","score":0.43073374032974243},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.421487420797348},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41359743475914},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.40968891978263855},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.3980928957462311},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3758089244365692},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.3203583061695099},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2079450786113739},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17330104112625122},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0764436423778534}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.721304178237915},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6226388216018677},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.5515791773796082},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5093075037002563},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49029138684272766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4651279151439667},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45205092430114746},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4475496709346771},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44672051072120667},{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.43073374032974243},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.421487420797348},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41359743475914},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.40968891978263855},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.3980928957462311},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3758089244365692},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3203583061695099},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2079450786113739},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17330104112625122},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0764436423778534},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04668-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04668-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04668-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35439933","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35439933","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:boa.unimib.it:10281/370398","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/370398","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:4c8f3645d9a74b9eadbf0964cbb7aeb5","is_oa":true,"landing_page_url":"https://doaj.org/article/4c8f3645d9a74b9eadbf0964cbb7aeb5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss S15, Pp 1-15 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9017741","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9017741","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04668-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04668-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04668-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8399999737739563,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G1974542962","display_name":null,"funder_award_id":"Sk\u0142odowska","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2689612763","display_name":null,"funder_award_id":"Marie","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3267707513","display_name":null,"funder_award_id":"2019-ATE-0533","funder_id":"https://openalex.org/F4320321610","funder_display_name":"Universit\u00e0 degli Studi di Milano-Bicocca"},{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5399556803","display_name":null,"funder_award_id":"This project has received funding from the Europea","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6022991970","display_name":null,"funder_award_id":"872539","funder_id":"https://openalex.org/F4320338337","funder_display_name":"H2020 Marie Sk\u0142odowska-Curie Actions"},{"id":"https://openalex.org/G6697205189","display_name":null,"funder_award_id":"872539","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321610","display_name":"Universit\u00e0 degli Studi di Milano-Bicocca","ror":"https://ror.org/01ynf4891"},{"id":"https://openalex.org/F4320338337","display_name":"H2020 Marie Sk\u0142odowska-Curie Actions","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4224316085.pdf","grobid_xml":"https://content.openalex.org/works/W4224316085.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1964807436","https://openalex.org/W2106578986","https://openalex.org/W2119180969","https://openalex.org/W2160378127","https://openalex.org/W2583363792","https://openalex.org/W2605343262","https://openalex.org/W2789843538","https://openalex.org/W2949848068","https://openalex.org/W2959670948","https://openalex.org/W3015281372","https://openalex.org/W3024439384","https://openalex.org/W3027255028","https://openalex.org/W3032594395","https://openalex.org/W3043124965","https://openalex.org/W3122109253","https://openalex.org/W3135273148","https://openalex.org/W3153781249","https://openalex.org/W3153851326","https://openalex.org/W3155889931","https://openalex.org/W3156291144","https://openalex.org/W3158566032","https://openalex.org/W3161034134","https://openalex.org/W3180301457","https://openalex.org/W3200130214","https://openalex.org/W4210644165","https://openalex.org/W4236865533","https://openalex.org/W4394666350"],"related_works":["https://openalex.org/W2002723386","https://openalex.org/W2749851556","https://openalex.org/W2765793069","https://openalex.org/W2550586733","https://openalex.org/W4200050032","https://openalex.org/W2515795842","https://openalex.org/W2324462508","https://openalex.org/W1855401909","https://openalex.org/W3138936383","https://openalex.org/W2601089939"],"abstract_inverted_index":{"Tests":[0],"on":[1],"Illumina":[2],"and":[3,9,28,48],"Nanopore":[4],"samples":[5,18],"proved":[6],"the":[7,10,29],"efficiency":[8],"effectiveness":[11],"of":[12],"MALVIRUS":[13,43],"in":[14],"analyzing":[15],"SARS-CoV-2":[16],"strain":[17],"with":[19,38],"respect":[20],"to":[21],"publicly":[22],"available":[23],"data":[24],"provided":[25,33],"by":[26,34],"NCBI":[27],"more":[30,46],"complete":[31],"dataset":[32],"GISAID.":[35],"A":[36],"comparison":[37],"state-of-the-art":[39],"tools":[40],"showed":[41],"that":[42],"is":[44],"always":[45],"precise":[47],"often":[49],"have":[50],"a":[51],"better":[52],"recall.":[53]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
