{"id":"https://openalex.org/W4221090405","doi":"https://doi.org/10.1186/s12859-022-04636-8","title":"The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development","display_name":"The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development","publication_year":2022,"publication_date":"2022-03-22","ids":{"openalex":"https://openalex.org/W4221090405","doi":"https://doi.org/10.1186/s12859-022-04636-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/35317743"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04636-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04636-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04636-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04636-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081245222","display_name":"Malcolm E Fisher","orcid":"https://orcid.org/0000-0003-1074-8103"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Malcolm E. Fisher","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007833252","display_name":"Erik Segerdell","orcid":"https://orcid.org/0000-0002-9611-1279"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Segerdell","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040603724","display_name":"Nicolas Matentzoglu","orcid":"https://orcid.org/0000-0002-7356-1779"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Matentzoglu","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Hinxton, UK","Monarch Initiative, London, UK","Semanticly Ltd, London, UK"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Monarch Initiative, London, UK","institution_ids":[]},{"raw_affiliation_string":"Semanticly Ltd, London, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035506830","display_name":"Mardi J. Nenni","orcid":"https://orcid.org/0000-0002-6238-1932"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mardi J. Nenni","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046773761","display_name":"Joshua D. Fortriede","orcid":"https://orcid.org/0000-0002-3293-5463"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua D. Fortriede","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068464173","display_name":"Stanley Chu","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Stanley Chu","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083931972","display_name":"Troy J. Pells","orcid":"https://orcid.org/0000-0002-2340-5356"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Troy J. Pells","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053103903","display_name":"David Osumi-Sutherland","orcid":"https://orcid.org/0000-0002-7073-9172"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Osumi-Sutherland","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081764238","display_name":"Praneet Chaturvedi","orcid":"https://orcid.org/0000-0002-8713-6570"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Praneet Chaturvedi","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046907178","display_name":"Christina James\u2010Zorn","orcid":"https://orcid.org/0000-0001-5495-4588"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christina James-Zorn","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036469235","display_name":"Nivitha Sundararaj","orcid":"https://orcid.org/0000-0002-2278-0824"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nivitha Sundararaj","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055199110","display_name":"Vaneet Lotay","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Vaneet S. Lotay","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046489815","display_name":"Virgilio Ponferrada","orcid":"https://orcid.org/0000-0002-8590-7183"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Virgilio Ponferrada","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083319740","display_name":"Dong Zhuo Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Dong Zhuo Wang","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100341148","display_name":"Eugene Kim","orcid":"https://orcid.org/0000-0003-0066-7051"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Eugene Kim","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049352598","display_name":"Sergei Agalakov","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sergei Agalakov","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029380338","display_name":"Bradley I. Arshinoff","orcid":null},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Bradley I. Arshinoff","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072513339","display_name":"Kamran Karimi","orcid":"https://orcid.org/0000-0001-5733-9409"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kamran Karimi","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064576180","display_name":"Peter D. Vize","orcid":"https://orcid.org/0000-0001-8026-0424"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Peter D. Vize","raw_affiliation_strings":["Department of Biological Science, University of Calgary, Calgary, AB, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biological Science, University of Calgary, Calgary, AB, Canada","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003793915","display_name":"Aaron M. Zorn","orcid":"https://orcid.org/0000-0003-3217-3590"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron M. Zorn","raw_affiliation_strings":["Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. aaron.zorn@cchmc.org","Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"affiliations":[{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. aaron.zorn@cchmc.org","institution_ids":[]},{"raw_affiliation_string":"Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5081245222"],"corresponding_institution_ids":["https://openalex.org/I1285204247"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0399,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.74342823,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"23","issue":"1","first_page":"99","last_page":"99"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7046071290969849},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6708714962005615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5874645113945007},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5382691621780396},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5283043384552002},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.48832055926322937},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.4619790315628052},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.420573353767395},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3691796064376831},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.34569889307022095},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33974379301071167},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.24439838528633118},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2130834460258484},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.16962739825248718},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14803263545036316},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14109361171722412}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7046071290969849},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6708714962005615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5874645113945007},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5382691621780396},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5283043384552002},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.48832055926322937},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.4619790315628052},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.420573353767395},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3691796064376831},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.34569889307022095},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33974379301071167},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.24439838528633118},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2130834460258484},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.16962739825248718},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14803263545036316},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14109361171722412},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04636-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04636-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04636-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35317743","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35317743","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c7e3060ff60a4f10a234811dc17e1bfc","is_oa":true,"landing_page_url":"https://doaj.org/article/c7e3060ff60a4f10a234811dc17e1bfc","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-15 (2022)","raw_type":"article"},{"id":"pmh:oai:prism.ucalgary.ca:1880/114507","is_oa":false,"landing_page_url":"http://hdl.handle.net/1880/114507","pdf_url":null,"source":{"id":"https://openalex.org/S4306402212","display_name":"PRISM (University of Calgary)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168635309","host_organization_name":"University of Calgary","host_organization_lineage":["https://openalex.org/I168635309"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8939077","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8939077","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04636-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04636-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04636-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G220679179","display_name":null,"funder_award_id":"1RM1HG010860-01","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4811017908","display_name":null,"funder_award_id":"P41 HD064556","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G6032735710","display_name":null,"funder_award_id":"RM1HG010860","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7987695537","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G8628316612","display_name":null,"funder_award_id":"1RM1HG010860","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337364","display_name":"National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4221090405.pdf","grobid_xml":"https://content.openalex.org/works/W4221090405.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1477700971","https://openalex.org/W1484649772","https://openalex.org/W1995127906","https://openalex.org/W2030114483","https://openalex.org/W2040712196","https://openalex.org/W2048024098","https://openalex.org/W2048495389","https://openalex.org/W2095723013","https://openalex.org/W2113142309","https://openalex.org/W2126434293","https://openalex.org/W2150068899","https://openalex.org/W2152850487","https://openalex.org/W2168700610","https://openalex.org/W2340045256","https://openalex.org/W2508904198","https://openalex.org/W2530129311","https://openalex.org/W2558643140","https://openalex.org/W2770044072","https://openalex.org/W2792132368","https://openalex.org/W2804457431","https://openalex.org/W2900069807","https://openalex.org/W2913606637","https://openalex.org/W2916913049","https://openalex.org/W2965518110","https://openalex.org/W2969618849","https://openalex.org/W2984769480","https://openalex.org/W3001863117","https://openalex.org/W3106811464","https://openalex.org/W3195961736","https://openalex.org/W4212919921","https://openalex.org/W4234674830","https://openalex.org/W6931179149","https://openalex.org/W6968019641","https://openalex.org/W7073705506"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2732632690","https://openalex.org/W72173000","https://openalex.org/W2726617685","https://openalex.org/W26549824","https://openalex.org/W2357775360","https://openalex.org/W2127299687","https://openalex.org/W2365397974","https://openalex.org/W2608149786","https://openalex.org/W2373434917"],"abstract_inverted_index":{"The":[0,25],"XPO":[1,26],"serves":[2],"as":[3],"an":[4],"example":[5],"of":[6,14,29,51],"current":[7],"best":[8],"practices":[9],"to":[10,37,59],"help":[11],"overcome":[12],"many":[13],"the":[15,42],"inherent":[16],"challenges":[17],"in":[18],"harmonizing":[19],"phenotype":[20],"data":[21,53],"between":[22],"different":[23],"species.":[24],"currently":[27],"consists":[28],"approximately":[30],"22,000":[31],"terms":[32],"and":[33],"is":[34],"being":[35],"used":[36],"curate":[38],"phenotypes":[39],"by":[40],"Xenbase,":[41],"Xenopus":[43],"Model":[44],"Organism":[45],"Knowledgebase,":[46],"forming":[47],"a":[48],"standardized":[49],"corpus":[50],"genotype-phenotype":[52],"that":[54],"can":[55],"be":[56],"directly":[57],"related":[58],"other":[60],"uPheno":[61],"compliant":[62],"resources.":[63]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
