{"id":"https://openalex.org/W4221010845","doi":"https://doi.org/10.1186/s12859-022-04618-w","title":"Interpretable prediction of necrotizing enterocolitis from machine learning analysis of premature infant stool microbiota","display_name":"Interpretable prediction of necrotizing enterocolitis from machine learning analysis of premature infant stool microbiota","publication_year":2022,"publication_date":"2022-03-25","ids":{"openalex":"https://openalex.org/W4221010845","doi":"https://doi.org/10.1186/s12859-022-04618-w","pmid":"https://pubmed.ncbi.nlm.nih.gov/35337258"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04618-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04618-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04618-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04618-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072482796","display_name":"Yun Chao Lin","orcid":"https://orcid.org/0000-0002-7475-0694"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yun Chao Lin","raw_affiliation_strings":["Department of Computer Science, Columbia University, 1214 Amsterdam Ave., Mailcode 0401, New York, 10027, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Columbia University, 1214 Amsterdam Ave., Mailcode 0401, New York, 10027, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012289548","display_name":"Ansaf Salleb-Aouissi","orcid":"https://orcid.org/0000-0001-9858-905X"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ansaf Salleb-Aouissi","raw_affiliation_strings":["Department of Computer Science, Columbia University, 1214 Amsterdam Ave., Mailcode 0401, New York, 10027, USA. as2933@columbia.edu","Department of Computer Science, Columbia University, 1214 Amsterdam Ave., Mailcode 0401, New York, 10027, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Columbia University, 1214 Amsterdam Ave., Mailcode 0401, New York, 10027, USA. as2933@columbia.edu","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Computer Science, Columbia University, 1214 Amsterdam Ave., Mailcode 0401, New York, 10027, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009126155","display_name":"Thomas A. Hooven","orcid":"https://orcid.org/0000-0003-1959-186X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I4210136208","display_name":"Richard King Mellon Foundation","ror":"https://ror.org/03qevzg44","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210136208"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas A. Hooven","raw_affiliation_strings":["Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, USA","Richard King Mellon Institute for Pediatric Research, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Richard King Mellon Institute for Pediatric Research, UPMC Children's Hospital of Pittsburgh, Pittsburgh, USA","institution_ids":["https://openalex.org/I4210136208"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5072482796"],"corresponding_institution_ids":["https://openalex.org/I78577930"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.5177,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.97235185,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"23","issue":"1","first_page":"104","last_page":"104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11294","display_name":"Infant Nutrition and Health","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11294","display_name":"Infant Nutrition and Health","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.014399999752640724,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10596","display_name":"Child Nutrition and Water Access","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/necrotizing-enterocolitis","display_name":"Necrotizing enterocolitis","score":0.8938531875610352},{"id":"https://openalex.org/keywords/enterocolitis","display_name":"Enterocolitis","score":0.6506751775741577},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6098039746284485},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.5118876695632935},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5099743604660034},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4975598156452179},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.46505483984947205},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.3864149749279022},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3846994936466217},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.31001096963882446},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2514615058898926},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22708731889724731},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18167388439178467}],"concepts":[{"id":"https://openalex.org/C2779303187","wikidata":"https://www.wikidata.org/wiki/Q10859678","display_name":"Necrotizing enterocolitis","level":2,"score":0.8938531875610352},{"id":"https://openalex.org/C2776258884","wikidata":"https://www.wikidata.org/wiki/Q3055368","display_name":"Enterocolitis","level":2,"score":0.6506751775741577},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6098039746284485},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.5118876695632935},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5099743604660034},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4975598156452179},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.46505483984947205},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.3864149749279022},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3846994936466217},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.31001096963882446},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2514615058898926},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22708731889724731},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18167388439178467},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007223","descriptor_name":"Infant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007231","descriptor_name":"Infant, Newborn","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007231","descriptor_name":"Infant, Newborn","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007231","descriptor_name":"Infant, Newborn","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007234","descriptor_name":"Infant, Premature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007234","descriptor_name":"Infant, Premature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007234","descriptor_name":"Infant, Premature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020345","descriptor_name":"Enterocolitis, Necrotizing","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D020345","descriptor_name":"Enterocolitis, Necrotizing","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D020345","descriptor_name":"Enterocolitis, Necrotizing","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":true},{"descriptor_ui":"D020345","descriptor_name":"Enterocolitis, Necrotizing","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D020345","descriptor_name":"Enterocolitis, Necrotizing","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D020345","descriptor_name":"Enterocolitis, Necrotizing","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-022-04618-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04618-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04618-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35337258","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35337258","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:645a07d621f048adb9d9da2dd7f96c3a","is_oa":false,"landing_page_url":"https://doaj.org/article/645a07d621f048adb9d9da2dd7f96c3a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-29 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8953333","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8953333","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.7916/g1pq-bj20","is_oa":true,"landing_page_url":"https://doi.org/10.7916/g1pq-bj20","pdf_url":null,"source":{"id":"https://openalex.org/S4306402601","display_name":"Columbia Academic Commons (Columbia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I78577930","host_organization_name":"Columbia University","host_organization_lineage":["https://openalex.org/I78577930"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04618-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04618-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04618-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G1608561261","display_name":null,"funder_award_id":"R21AI147511","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G4834544933","display_name":null,"funder_award_id":"K08AI132555","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4221010845.pdf","grobid_xml":"https://content.openalex.org/works/W4221010845.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1503352355","https://openalex.org/W1523266228","https://openalex.org/W1967189540","https://openalex.org/W1975434115","https://openalex.org/W1997123421","https://openalex.org/W2000543170","https://openalex.org/W2001463272","https://openalex.org/W2012466364","https://openalex.org/W2023506796","https://openalex.org/W2026029153","https://openalex.org/W2029884335","https://openalex.org/W2047812910","https://openalex.org/W2050451609","https://openalex.org/W2052969143","https://openalex.org/W2059343174","https://openalex.org/W2065415897","https://openalex.org/W2078112764","https://openalex.org/W2091308450","https://openalex.org/W2100746158","https://openalex.org/W2108122869","https://openalex.org/W2110119381","https://openalex.org/W2125479168","https://openalex.org/W2128769815","https://openalex.org/W2134721504","https://openalex.org/W2139884694","https://openalex.org/W2148030154","https://openalex.org/W2162015645","https://openalex.org/W2162190649","https://openalex.org/W2166949225","https://openalex.org/W2207819727","https://openalex.org/W2295620997","https://openalex.org/W2326641739","https://openalex.org/W2582492205","https://openalex.org/W2588681363","https://openalex.org/W2592537218","https://openalex.org/W2611464498","https://openalex.org/W2731955755","https://openalex.org/W2761460614","https://openalex.org/W2767844672","https://openalex.org/W2769542288","https://openalex.org/W2770324303","https://openalex.org/W2771673050","https://openalex.org/W2808466192","https://openalex.org/W2898148278","https://openalex.org/W2899387462","https://openalex.org/W2909145450","https://openalex.org/W2914348147","https://openalex.org/W2915529376","https://openalex.org/W2922143522","https://openalex.org/W2950612336","https://openalex.org/W2951299640","https://openalex.org/W2962019792","https://openalex.org/W2982508760","https://openalex.org/W2985559811","https://openalex.org/W2990618091","https://openalex.org/W2995792428","https://openalex.org/W2997789157","https://openalex.org/W3003579885","https://openalex.org/W3005296067","https://openalex.org/W3005676248","https://openalex.org/W3011277118","https://openalex.org/W3040924159","https://openalex.org/W3093451665","https://openalex.org/W4200012084","https://openalex.org/W4235469056","https://openalex.org/W4248468736","https://openalex.org/W4252160351","https://openalex.org/W4299542564","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W3015717938","https://openalex.org/W2300046951","https://openalex.org/W2082136782","https://openalex.org/W2325845343","https://openalex.org/W1509450179","https://openalex.org/W2054756716","https://openalex.org/W2077704628","https://openalex.org/W2139847602","https://openalex.org/W2940540567","https://openalex.org/W2793730533"],"abstract_inverted_index":{"BACKGROUND:":[0],"Necrotizing":[1],"enterocolitis":[2],"(NEC)":[3],"is":[4,57,294],"a":[5,72,109,159,175,201,232,344],"common,":[6,315],"potentially":[7,282,316],"catastrophic":[8],"intestinal":[9,33,101,123],"disease":[10,153,251],"among":[11],"very":[12],"low":[13],"birthweight":[14],"premature":[15,354],"infants.":[16,196],"Affecting":[17],"up":[18],"to":[19,40,74,90,372],"15%":[20],"of":[21,51,68,162,216,235,239,247,267,314],"neonates":[22],"born":[23],"weighing":[24],"less":[25],"than":[26],"1500":[27],"g,":[28],"NEC":[29,52,76,94,118,229,242,268,290,349,363],"causes":[30],"sudden-onset,":[31],"progressive":[32],"inflammation":[34],"and":[35,237,281,336,342],"necrosis,":[36],"which":[37,126,180,209],"can":[38,127],"lead":[39],"significant":[41],"bowel":[42],"loss,":[43],"multi-organ":[44],"injury,":[45],"or":[46,303,331],"death.":[47],"No":[48],"unifying":[49],"cause":[50],"has":[53,277],"been":[54],"identified,":[55],"nor":[56],"there":[58],"any":[59],"reliable":[60],"biomarker":[61],"that":[62,142,152,256,274],"indicates":[63],"an":[64,88,245,257],"individual":[65],"patient's":[66],"risk":[67,119,222],"the":[69,79,150,205,284,312,379],"disease.":[70],"Without":[71],"way":[73,285],"predict":[75],"in":[77,87,311,378],"advance,":[78],"current":[80],"medical":[81],"strategy":[82],"involves":[83],"close":[84],"clinical":[85,320],"monitoring":[86],"effort":[89],"treat":[91],"babies":[92],"with":[93,231,279],"as":[95,97,167,323],"quickly":[96],"possible":[98],"before":[99,250],"irrecoverable":[100],"damage":[102],"occurs.":[103],"In":[104],"this":[105,358],"report,":[106],"we":[107,181],"describe":[108],"novel":[110],"machine":[111,163],"learning":[112,164,170],"application":[113],"for":[114,348,362],"generating":[115],"dynamic,":[116],"individualized":[117],"scores":[120],"based":[121],"on":[122,183],"microbiota":[124,157,297],"data,":[125],"be":[128,370],"determined":[129],"from":[130,134,146,155,186,193,300,351],"sequencing":[131],"bacterial":[132,272],"DNA":[133,306],"otherwise":[135],"discarded":[136],"infant":[137,355],"stool.":[138,356],"A":[139],"central":[140],"insight":[141],"differentiates":[143],"our":[144,262,365],"work":[145,276],"past":[147,217,275],"efforts":[148],"was":[149,360],"recognition":[151],"prediction":[154,350],"stool":[156,191],"represents":[158],"specific":[160],"subtype":[161],"problem":[165],"known":[166],"multiple":[168],"instance":[169],"(MIL).":[171],"RESULTS:":[172],"We":[173,253,339],"used":[174],"neural":[176],"network-based":[177],"MIL":[178,211,263,366],"architecture,":[179],"tested":[182],"independent":[184],"datasets":[185],"two":[187],"cohorts":[188],"encompassing":[189],"3595":[190],"samples":[192],"261":[194],"at-risk":[195],"Our":[197,292],"report":[198],"also":[199,254,369],"introduces":[200],"new":[202,221,287],"concept":[203],"called":[204],"\"growing":[206],"bag\"":[207],"analysis,":[208],"applies":[210],"over":[212],"time,":[213],"allowing":[214],"incorporation":[215],"data":[218,298],"into":[219,261],"each":[220],"calculation.":[223],"This":[224],"approach":[225,367],"allowed":[226],"early,":[227],"accurate":[228],"prediction,":[230,364],"mean":[233],"sensitivity":[234],"86%":[236],"specificity":[238],"90%.":[240],"True-positive":[241],"predictions":[243],"occurred":[244],"average":[246],"8":[248],"days":[249],"onset.":[252],"demonstrate":[255],"attention-gated":[258],"mechanism":[259],"incorporated":[260],"algorithm":[264],"permits":[265],"interpretation":[266],"risk,":[269],"identifying":[270],"several":[271],"taxa":[273],"associated":[278],"NEC,":[280],"pointing":[283],"toward":[286],"hypotheses":[288],"about":[289],"pathogenesis.":[291],"system":[293,347,359],"flexible,":[295],"accepting":[296],"generated":[299],"targeted":[301],"16S":[302],"\"shotgun\"":[304],"whole-genome":[305],"sequencing.":[307],"It":[308],"performs":[309],"well":[310],"setting":[313],"confounding":[317],"preterm":[318],"neonatal":[319],"events":[321],"such":[322],"perinatal":[324],"cardiopulmonary":[325],"depression,":[326],"antibiotic":[327],"administration,":[328],"feeding":[329,335],"disruptions,":[330],"transitions":[332],"between":[333],"breast":[334],"formula.":[337],"CONCLUSIONS:":[338],"have":[340],"developed":[341,361],"validated":[343],"robust":[345],"MIL-based":[346],"harmlessly":[352],"collected":[353],"While":[357],"may":[368],"applicable":[371],"other":[373],"diseases":[374],"characterized":[375],"by":[376],"changes":[377],"human":[380],"microbiota.":[381]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
