{"id":"https://openalex.org/W4226103421","doi":"https://doi.org/10.1186/s12859-022-04594-1","title":"MonaGO: a novel gene ontology enrichment analysis visualisation system","display_name":"MonaGO: a novel gene ontology enrichment analysis visualisation system","publication_year":2022,"publication_date":"2022-02-14","ids":{"openalex":"https://openalex.org/W4226103421","doi":"https://doi.org/10.1186/s12859-022-04594-1","pmid":"https://pubmed.ncbi.nlm.nih.gov/35164667"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-04594-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04594-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04594-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04594-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087800467","display_name":"Ziyin Xin","orcid":null},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ziyin Xin","raw_affiliation_strings":["Faculty of IT, Monash University, Clayton, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of IT, Monash University, Clayton, VIC, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067704689","display_name":"Yujun Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Yujun Cai","raw_affiliation_strings":["Faculty of IT, Monash University, Clayton, VIC, Australia","Southeast University, Nanjing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of IT, Monash University, Clayton, VIC, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Southeast University, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002360012","display_name":"Louis T. Dang","orcid":"https://orcid.org/0000-0003-4853-4952"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Louis T. Dang","raw_affiliation_strings":["Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia","Systems Biology Institute Australia, Clayton, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030206741","display_name":"Hannah Burke","orcid":"https://orcid.org/0000-0002-1137-3860"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Hannah M. S. Burke","raw_affiliation_strings":["Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia","Systems Biology Institute Australia, Clayton, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059942694","display_name":"Jerico Revote","orcid":"https://orcid.org/0000-0002-0381-3600"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jerico Revote","raw_affiliation_strings":["Monash eResearch Centre, Monash University, Melbourne, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Monash eResearch Centre, Monash University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017373887","display_name":"Natalie Charitakis","orcid":"https://orcid.org/0000-0002-9592-6257"},"institutions":[{"id":"https://openalex.org/I4210150290","display_name":"Murdoch Children's Research Institute","ror":"https://ror.org/048fyec77","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210150290"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Natalie Charitakis","raw_affiliation_strings":["Murdoch Children's Research Institute, Parkville, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Murdoch Children's Research Institute, Parkville, VIC, Australia","institution_ids":["https://openalex.org/I4210150290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016180438","display_name":"Denis Bienroth","orcid":"https://orcid.org/0000-0002-0574-8259"},"institutions":[{"id":"https://openalex.org/I4210150290","display_name":"Murdoch Children's Research Institute","ror":"https://ror.org/048fyec77","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210150290"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Denis Bienroth","raw_affiliation_strings":["Murdoch Children's Research Institute, Parkville, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Murdoch Children's Research Institute, Parkville, VIC, Australia","institution_ids":["https://openalex.org/I4210150290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016142657","display_name":"Hieu T. Nim","orcid":"https://orcid.org/0000-0001-9320-0236"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210150290","display_name":"Murdoch Children's Research Institute","ror":"https://ror.org/048fyec77","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210150290"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]},{"id":"https://openalex.org/I60733029","display_name":"Monash Institute of Medical Research","ror":"https://ror.org/05p96ba03","country_code":"AU","type":"healthcare","lineage":["https://openalex.org/I60733029"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Hieu T. Nim","raw_affiliation_strings":["Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia. hieu.nim@monash.edu","Faculty of IT, Monash University, Clayton, VIC, Australia. hieu.nim@monash.edu","Murdoch Children's Research Institute, Parkville, VIC, Australia. hieu.nim@monash.edu","Systems Biology Institute Australia, Clayton, VIC, Australia. hieu.nim@monash.edu","Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia. hieu.nim@monash.edu","institution_ids":["https://openalex.org/I2801239119"]},{"raw_affiliation_string":"Faculty of IT, Monash University, Clayton, VIC, Australia. hieu.nim@monash.edu","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Murdoch Children's Research Institute, Parkville, VIC, Australia. hieu.nim@monash.edu","institution_ids":["https://openalex.org/I4210150290"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia. hieu.nim@monash.edu","institution_ids":["https://openalex.org/I56590836","https://openalex.org/I60733029"]},{"raw_affiliation_string":"Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia","institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017943466","display_name":"Yuan-Fang Li","orcid":"https://orcid.org/0000-0003-4651-2821"},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Yuan-Fang Li","raw_affiliation_strings":["Faculty of IT, Monash University, Clayton, VIC, Australia. yuanfang.li@monash.edu","Systems Biology Institute Australia, Clayton, VIC, Australia. yuanfang.li@monash.edu","Systems Biology Institute Australia, Clayton, VIC, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of IT, Monash University, Clayton, VIC, Australia. yuanfang.li@monash.edu","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia. yuanfang.li@monash.edu","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005850694","display_name":"Mirana Ramialison","orcid":"https://orcid.org/0000-0001-6315-4777"},"institutions":[{"id":"https://openalex.org/I2801239119","display_name":"Australian Regenerative Medicine Institute","ror":"https://ror.org/02qa5kg76","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801037857","https://openalex.org/I2801239119","https://openalex.org/I56590836"]},{"id":"https://openalex.org/I4210118579","display_name":"Systems Biology Institute","ror":"https://ror.org/02c7akf81","country_code":"JP","type":"nonprofit","lineage":["https://openalex.org/I4210118579"]},{"id":"https://openalex.org/I4210150290","display_name":"Murdoch Children's Research Institute","ror":"https://ror.org/048fyec77","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I4210150290"]}],"countries":["AU","JP"],"is_corresponding":true,"raw_author_name":"Mirana Ramialison","raw_affiliation_strings":["Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia. mirana.ramialison@monash.edu","Murdoch Children's Research Institute, Parkville, VIC, Australia. mirana.ramialison@monash.edu","Systems Biology Institute Australia, Clayton, VIC, Australia. mirana.ramialison@monash.edu","Systems Biology Institute Australia, Clayton, VIC, Australia"],"raw_orcid":"https://orcid.org/0000-0001-6315-4777","affiliations":[{"raw_affiliation_string":"Australian Regenerative Medicine Institute, Monash University, Clayton, VIC, Australia. mirana.ramialison@monash.edu","institution_ids":["https://openalex.org/I2801239119"]},{"raw_affiliation_string":"Murdoch Children's Research Institute, Parkville, VIC, Australia. mirana.ramialison@monash.edu","institution_ids":["https://openalex.org/I4210150290"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia. mirana.ramialison@monash.edu","institution_ids":["https://openalex.org/I4210118579"]},{"raw_affiliation_string":"Systems Biology Institute Australia, Clayton, VIC, Australia","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5005850694","https://openalex.org/A5016142657","https://openalex.org/A5017943466"],"corresponding_institution_ids":["https://openalex.org/I2801239119","https://openalex.org/I4210118579","https://openalex.org/I4210150290","https://openalex.org/I56590836","https://openalex.org/I60733029"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.5832,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.90983934,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"69","last_page":"69"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8750249743461609},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7585093975067139},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6391870379447937},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.5438639521598816},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5371034741401672},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4934002459049225},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.47390854358673096},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4471122920513153},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3998604118824005},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38552287220954895},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36907854676246643},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29909321665763855},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10781857371330261},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07737505435943604}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8750249743461609},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7585093975067139},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6391870379447937},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.5438639521598816},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5371034741401672},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4934002459049225},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.47390854358673096},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4471122920513153},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3998604118824005},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38552287220954895},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36907854676246643},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29909321665763855},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10781857371330261},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07737505435943604},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-022-04594-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04594-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04594-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35164667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35164667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8845231","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8845231","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:8739798a1ad5411a83830f52ed6d44a8","is_oa":true,"landing_page_url":"https://doaj.org/article/8739798a1ad5411a83830f52ed6d44a8","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-16 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-04594-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-04594-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-022-04594-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"},{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4226103421.pdf","grobid_xml":"https://content.openalex.org/works/W4226103421.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1969353942","https://openalex.org/W1980548655","https://openalex.org/W1992512552","https://openalex.org/W2038963685","https://openalex.org/W2096086497","https://openalex.org/W2096561521","https://openalex.org/W2097624459","https://openalex.org/W2103017472","https://openalex.org/W2124954099","https://openalex.org/W2130410032","https://openalex.org/W2135415614","https://openalex.org/W2137623997","https://openalex.org/W2141545183","https://openalex.org/W2146994504","https://openalex.org/W2171030481","https://openalex.org/W2191641478","https://openalex.org/W2223549218","https://openalex.org/W2772258840","https://openalex.org/W2922298707","https://openalex.org/W2928665623","https://openalex.org/W2932277036","https://openalex.org/W4211208250"],"related_works":["https://openalex.org/W2006240110","https://openalex.org/W2909972699","https://openalex.org/W2039602384","https://openalex.org/W2751110224","https://openalex.org/W2794019507","https://openalex.org/W1966357780","https://openalex.org/W2496664377","https://openalex.org/W2288407995","https://openalex.org/W2147036980","https://openalex.org/W304756206"],"abstract_inverted_index":{"BACKGROUND:":[0],"Gene":[1,48],"ontology":[2],"(GO)":[3],"enrichment":[4,68,112],"analysis":[5,69,184],"is":[6,39,43,51,122],"frequently":[7],"undertaken":[8],"during":[9],"exploration":[10],"of":[11,20,31,100,166,182,193],"various":[12],"-omics":[13],"data":[14],"sets.":[15],"Despite":[16],"the":[17,32,72,101,180,188,191,194],"wide":[18],"array":[19],"tools":[21,114],"available":[22],"to":[23,25,41,159],"biologists":[24,161,189],"perform":[26],"this":[27],"analysis,":[28],"meaningful":[29,164],"visualisation":[30,55,113,130,153],"overrepresented":[33,167],"GO":[34,67,81,111,168,183],"in":[35,95,162,173],"a":[36,52,123,139],"manner":[37],"which":[38],"easy":[40],"interpret":[42],"still":[44],"lacking.":[45],"RESULTS:":[46],"Monash":[47],"Ontology":[49],"(MonaGO)":[50],"novel":[53],"web-based":[54],"system":[56],"that":[57,120,126],"provides":[58],"an":[59,174],"intuitive,":[60],"interactive":[61,129,152],"and":[62,70,108,151,185],"responsive":[63],"interface":[64],"for":[65],"performing":[66],"visualising":[71],"results.":[73,195],"MonaGO":[74,107,121,147,177],"supports":[75],"gene":[76],"lists":[77],"as":[78,80,83,90,154,156],"well":[79,155],"terms":[82],"inputs.":[84],"Visualisation":[85],"results":[86],"can":[87],"be":[88],"exported":[89],"high-resolution":[91],"images":[92],"or":[93],"restored":[94],"new":[96],"sessions,":[97],"allowing":[98],"reproducibility":[99],"analysis.":[102],"An":[103],"extensive":[104],"comparison":[105],"between":[106],"11":[109],"state-of-the-art":[110],"based":[115],"on":[116],"9":[117],"features":[118],"revealed":[119],"unique":[124],"platform":[125],"simultaneously":[127],"allows":[128],"within":[131],"one":[132],"single":[133],"output":[134],"page,":[135],"directly":[136],"accessible":[137],"through":[138],"web":[140],"browser":[141],"with":[142],"customisable":[143],"display":[144],"options.":[145],"CONCLUSION:":[146],"combines":[148],"dynamic":[149],"clustering":[150],"customisation":[157],"options":[158],"assist":[160,187],"obtaining":[163],"representation":[165,192],"terms,":[169],"producing":[170],"simplified":[171],"outputs":[172],"unbiased":[175],"manner.":[176],"will":[178,186],"facilitate":[179],"interpretation":[181],"into":[190]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-12T21:12:35.861297","created_date":"2022-05-05T00:00:00"}
