{"id":"https://openalex.org/W4205886736","doi":"https://doi.org/10.1186/s12859-021-04539-0","title":"HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey","display_name":"HESML: a real-time semantic measures library for the biomedical domain with a reproducible survey","publication_year":2022,"publication_date":"2022-01-06","ids":{"openalex":"https://openalex.org/W4205886736","doi":"https://doi.org/10.1186/s12859-021-04539-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/34991460"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04539-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04539-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04539-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04539-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071911537","display_name":"Juan J. Lastra-D\u00edaz","orcid":"https://orcid.org/0000-0003-2522-4222"},"institutions":[{"id":"https://openalex.org/I178450904","display_name":"Universidad Nacional de Educaci\u00f3n a Distancia","ror":"https://ror.org/02msb5n36","country_code":"ES","type":"education","lineage":["https://openalex.org/I178450904"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan J. Lastra-D\u00edaz","raw_affiliation_strings":["NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain. jlastra@invi.uned.es","NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0003-2522-4222","affiliations":[{"raw_affiliation_string":"NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain. jlastra@invi.uned.es","institution_ids":["https://openalex.org/I178450904"]},{"raw_affiliation_string":"NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain","institution_ids":["https://openalex.org/I178450904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017549411","display_name":"Alicia Lara-Clares","orcid":"https://orcid.org/0000-0002-3424-3030"},"institutions":[{"id":"https://openalex.org/I178450904","display_name":"Universidad Nacional de Educaci\u00f3n a Distancia","ror":"https://ror.org/02msb5n36","country_code":"ES","type":"education","lineage":["https://openalex.org/I178450904"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alicia Lara-Clares","raw_affiliation_strings":["NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain","institution_ids":["https://openalex.org/I178450904"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002392851","display_name":"Ana Garc\u0131\u0301a-Serrano","orcid":"https://orcid.org/0000-0003-0975-7205"},"institutions":[{"id":"https://openalex.org/I178450904","display_name":"Universidad Nacional de Educaci\u00f3n a Distancia","ror":"https://ror.org/02msb5n36","country_code":"ES","type":"education","lineage":["https://openalex.org/I178450904"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana Garcia-Serrano","raw_affiliation_strings":["NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NLP & IR Research Group, E.T.S.I. Inform\u00e1tica, Universidad Nacional de Educaci\u00f3n a Distancia (UNED), C/Juan del Rosal 16, 28040, Madrid, Spain","institution_ids":["https://openalex.org/I178450904"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5071911537"],"corresponding_institution_ids":["https://openalex.org/I178450904"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4701,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.55810764,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"23","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5408999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5408999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1543000042438507,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.049800001084804535,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8005737066268921},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.6698713898658752},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.567323625087738},{"id":"https://openalex.org/keywords/dijkstras-algorithm","display_name":"Dijkstra's algorithm","score":0.5465970635414124},{"id":"https://openalex.org/keywords/shortest-path-problem","display_name":"Shortest path problem","score":0.4998667240142822},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4960225522518158},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4947178065776825},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4631125032901764},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4425925016403198},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.35231906175613403},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16702553629875183}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8005737066268921},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.6698713898658752},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.567323625087738},{"id":"https://openalex.org/C173870130","wikidata":"https://www.wikidata.org/wiki/Q8548","display_name":"Dijkstra's algorithm","level":4,"score":0.5465970635414124},{"id":"https://openalex.org/C22590252","wikidata":"https://www.wikidata.org/wiki/Q1058754","display_name":"Shortest path problem","level":3,"score":0.4998667240142822},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4960225522518158},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4947178065776825},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4631125032901764},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4425925016403198},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.35231906175613403},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16702553629875183},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-021-04539-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04539-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04539-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34991460","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34991460","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:10377d464e4a499b8070e7b3b3f3286f","is_oa":true,"landing_page_url":"https://doaj.org/article/10377d464e4a499b8070e7b3b3f3286f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss 1, Pp 1-31 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8734250","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8734250","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04539-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04539-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04539-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.6600000262260437,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323261","display_name":"Universidad Nacional de Educaci\u00f3n a Distancia","ror":"https://ror.org/02msb5n36"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4205886736.pdf","grobid_xml":"https://content.openalex.org/works/W4205886736.grobid-xml"},"referenced_works_count":117,"referenced_works":["https://openalex.org/W10647322","https://openalex.org/W186091728","https://openalex.org/W202767273","https://openalex.org/W1241017059","https://openalex.org/W1502916596","https://openalex.org/W1561908597","https://openalex.org/W1659833910","https://openalex.org/W1783597500","https://openalex.org/W1816823725","https://openalex.org/W1854884267","https://openalex.org/W1859313536","https://openalex.org/W1886319227","https://openalex.org/W1970264778","https://openalex.org/W1971063398","https://openalex.org/W1980604971","https://openalex.org/W1980885411","https://openalex.org/W1984121448","https://openalex.org/W1985640802","https://openalex.org/W1988624983","https://openalex.org/W1990031360","https://openalex.org/W1999722941","https://openalex.org/W2000963751","https://openalex.org/W2002041206","https://openalex.org/W2007038646","https://openalex.org/W2019003829","https://openalex.org/W2025428542","https://openalex.org/W2034784092","https://openalex.org/W2041025542","https://openalex.org/W2049758151","https://openalex.org/W2053715834","https://openalex.org/W2055518963","https://openalex.org/W2060505622","https://openalex.org/W2060948468","https://openalex.org/W2061615066","https://openalex.org/W2062301337","https://openalex.org/W2072640685","https://openalex.org/W2081580037","https://openalex.org/W2084168100","https://openalex.org/W2084377579","https://openalex.org/W2087739686","https://openalex.org/W2097624459","https://openalex.org/W2099364528","https://openalex.org/W2100364461","https://openalex.org/W2100761975","https://openalex.org/W2100935296","https://openalex.org/W2103017472","https://openalex.org/W2103318667","https://openalex.org/W2105205636","https://openalex.org/W2105813018","https://openalex.org/W2106419549","https://openalex.org/W2106810132","https://openalex.org/W2110595429","https://openalex.org/W2110693008","https://openalex.org/W2111880854","https://openalex.org/W2112872859","https://openalex.org/W2113142309","https://openalex.org/W2119418518","https://openalex.org/W2121343862","https://openalex.org/W2123457740","https://openalex.org/W2123761649","https://openalex.org/W2123840363","https://openalex.org/W2126225210","https://openalex.org/W2127536416","https://openalex.org/W2127563440","https://openalex.org/W2128049108","https://openalex.org/W2132056568","https://openalex.org/W2132290594","https://openalex.org/W2133014144","https://openalex.org/W2134226301","https://openalex.org/W2136480620","https://openalex.org/W2145555242","https://openalex.org/W2149600008","https://openalex.org/W2151021662","https://openalex.org/W2153499010","https://openalex.org/W2159348493","https://openalex.org/W2159583324","https://openalex.org/W2159675211","https://openalex.org/W2164290176","https://openalex.org/W2168022112","https://openalex.org/W2169179075","https://openalex.org/W2169528473","https://openalex.org/W2169896388","https://openalex.org/W2215513433","https://openalex.org/W2239718591","https://openalex.org/W2294429012","https://openalex.org/W2303098424","https://openalex.org/W2395889391","https://openalex.org/W2401485379","https://openalex.org/W2492295672","https://openalex.org/W2493916176","https://openalex.org/W2517456239","https://openalex.org/W2534712034","https://openalex.org/W2537776804","https://openalex.org/W2548028586","https://openalex.org/W2589657480","https://openalex.org/W2594902929","https://openalex.org/W2596568673","https://openalex.org/W2735784619","https://openalex.org/W2889272240","https://openalex.org/W2915895751","https://openalex.org/W2942429422","https://openalex.org/W2950595506","https://openalex.org/W2963105477","https://openalex.org/W2964232431","https://openalex.org/W2964922231","https://openalex.org/W2970220395","https://openalex.org/W3041230641","https://openalex.org/W3089770881","https://openalex.org/W3102299942","https://openalex.org/W3108122947","https://openalex.org/W3117314705","https://openalex.org/W3136711709","https://openalex.org/W3209302286","https://openalex.org/W4245082111","https://openalex.org/W4300388893","https://openalex.org/W6629511113","https://openalex.org/W6691431627"],"related_works":["https://openalex.org/W3209137076","https://openalex.org/W4223969905","https://openalex.org/W2374560440","https://openalex.org/W1490490684","https://openalex.org/W4221129498","https://openalex.org/W2887026015","https://openalex.org/W2361442013","https://openalex.org/W2373384475","https://openalex.org/W4310124294","https://openalex.org/W143403600"],"abstract_inverted_index":{"BACKGROUND:":[0],"Ontology-based":[1],"semantic":[2,32,43,96,125,197],"similarity":[3,73,126,198],"measures":[4,33,44,263],"based":[5,35,57,264],"on":[6,36,58,71,265],"SNOMED-CT,":[7],"MeSH,":[8],"and":[9,23,49,118,162,233,287,296,310],"Gene":[10],"Ontology":[11],"are":[12,270],"being":[13],"extensively":[14],"used":[15],"in":[16,19,91,115,167,221,282],"many":[17],"applications":[18],"biomedical":[20,155,225],"text":[21],"mining":[22],"genomics":[24],"respectively,":[25],"which":[26,80,157,189],"has":[27],"encouraged":[28],"the":[29,37,86,89,92,99,119,131,139,146,154,159,168,176,179,191,217,222,230,237,250,253,259,266,303],"development":[30],"of":[31,88,94,101,121,145,178,194,205,215,236,252,258,275,306],"libraries":[34,45,220],"aforementioned":[38,133,224],"ontologies.":[39],"However,":[40,98],"current":[41,218],"state-of-the-art":[42,219],"have":[46],"some":[47],"performance":[48,232],"scalability":[50],"drawbacks":[51],"derived":[52],"from":[53],"their":[54,107,112,279],"ontology":[55,164,260],"representations":[56],"relational":[59],"databases,":[60],"or":[61],"naive":[62],"in-memory":[63],"graph":[64],"representations.":[65],"Likewise,":[66,242],"a":[67,82,172,203,292],"recent":[68],"reproducible":[69,206],"survey":[70],"word":[72],"shows":[74],"that":[75,209,245],"one":[76],"hybrid":[77],"IC-based":[78],"measure":[79],"integrates":[81],"shortest-path":[83,104,240],"computation":[84,109,193],"sets":[85],"state":[87],"art":[90],"family":[93],"ontology-based":[95],"measures.":[97],"lack":[100],"an":[102,142],"efficient":[103,161],"algorithm":[105,181,269],"for":[106,138,153,175,182],"real-time":[108,192,231],"prevents":[110],"both":[111],"practical":[113],"use":[114,120],"any":[116,122,195],"application":[117],"other":[123],"path-based":[124,196],"measure.":[127,199],"RESULTS:":[128],"To":[129],"bridge":[130],"two":[132],"gaps,":[134],"this":[135],"work":[136],"introduces":[137],"first":[140],"time":[141],"updated":[143],"version":[144],"HESML":[147,210],"Java":[148],"software":[149],"library":[150],"especially":[151],"designed":[152],"domain,":[156],"implements":[158],"most":[160],"scalable":[163],"representation":[165],"reported":[166],"literature,":[169],"together":[170],"with":[171],"new":[173,238,267],"method":[174],"approximation":[177,234],"Dijkstra's":[180],"taxonomies,":[183],"called":[184],"Ancestors-based":[185],"Shortest-Path":[186],"Length":[187],"(AncSPL),":[188],"allows":[190],"CONCLUSIONS:":[200],"We":[201],"introduce":[202],"set":[204],"benchmarks":[207],"showing":[208],"outperforms":[211],"by":[212],"several":[213],"orders":[214,274],"magnitude":[216,276],"three":[223],"ontologies,":[226],"as":[227,229,298],"well":[228],"quality":[235],"AncSPL":[239,246,268],"algorithm.":[241],"we":[243,290],"show":[244],"linearly":[247],"scales":[248],"regarding":[249],"dimension":[251],"common":[254],"ancestor":[255],"subgraph":[256],"regardless":[257],"size.":[261],"Path-based":[262],"up":[271],"to":[272,301],"six":[273],"faster":[277],"than":[278],"exact":[280,304],"implementation":[281],"large":[283],"ontologies":[284],"like":[285],"SNOMED-CT":[286],"GO.":[288],"Finally,":[289],"provide":[291],"detailed":[293],"reproducibility":[294],"protocol":[295],"dataset":[297],"supplementary":[299],"material":[300],"allow":[302],"replication":[305],"all":[307],"our":[308],"experiments":[309],"results.":[311]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
