{"id":"https://openalex.org/W3211189534","doi":"https://doi.org/10.1186/s12859-021-04445-5","title":"An Ensemble Deep Learning based Predictor for Simultaneously Identifying Protein Ubiquitylation and SUMOylation Sites","display_name":"An Ensemble Deep Learning based Predictor for Simultaneously Identifying Protein Ubiquitylation and SUMOylation Sites","publication_year":2021,"publication_date":"2021-10-24","ids":{"openalex":"https://openalex.org/W3211189534","doi":"https://doi.org/10.1186/s12859-021-04445-5","mag":"3211189534","pmid":"https://pubmed.ncbi.nlm.nih.gov/34689734"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04445-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04445-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04445-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04445-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087149818","display_name":"Fei He","orcid":"https://orcid.org/0000-0002-3284-9506"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei He","raw_affiliation_strings":["Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China","School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education, Jilin University, Changchun, China","institution_ids":["https://openalex.org/I194450716"]},{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100399433","display_name":"Jingyi Li","orcid":"https://orcid.org/0000-0002-3126-7889"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyi Li","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Rui Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Wang","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101401076","display_name":"Xiaowei Zhao","orcid":"https://orcid.org/0000-0002-9868-5102"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaowei Zhao","raw_affiliation_strings":["School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China. zhaoxw303@nenu.edu.cn","School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China. zhaoxw303@nenu.edu.cn","institution_ids":["https://openalex.org/I184983240"]},{"raw_affiliation_string":"School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015534864","display_name":"Ye Han","orcid":"https://orcid.org/0000-0002-7001-4753"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210152006","display_name":"Jilin Agricultural University","ror":"https://ror.org/05dmhhd41","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152006"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ye Han","raw_affiliation_strings":["School of Information Technology, Jilin Agricultural University, Changchun, China. yeh@jlau.edu.cn","School of Information Technology, Jilin Agricultural University, Changchun, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Technology, Jilin Agricultural University, Changchun, China. yeh@jlau.edu.cn","institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210152006"]},{"raw_affiliation_string":"School of Information Technology, Jilin Agricultural University, Changchun, China","institution_ids":["https://openalex.org/I4210152006"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015534864","https://openalex.org/A5101401076"],"corresponding_institution_ids":["https://openalex.org/I184983240","https://openalex.org/I194450716","https://openalex.org/I4210152006"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.3696,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.56150984,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"1","first_page":"519","last_page":"519"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9398999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9398999810218811,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.02669999934732914,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sumo-protein","display_name":"SUMO protein","score":0.9769462943077087},{"id":"https://openalex.org/keywords/crosstalk","display_name":"Crosstalk","score":0.7377111911773682},{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.6527190804481506},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6456921696662903},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5991970300674438},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47550565004348755},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4432770311832428},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4331015646457672},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42275363206863403},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36051279306411743},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3335103988647461},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3316444158554077},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2867507338523865},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1805310845375061},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11448022723197937}],"concepts":[{"id":"https://openalex.org/C171350616","wikidata":"https://www.wikidata.org/wiki/Q61506","display_name":"SUMO protein","level":4,"score":0.9769462943077087},{"id":"https://openalex.org/C169822122","wikidata":"https://www.wikidata.org/wiki/Q230187","display_name":"Crosstalk","level":2,"score":0.7377111911773682},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.6527190804481506},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6456921696662903},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5991970300674438},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47550565004348755},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4432770311832428},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4331015646457672},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42275363206863403},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36051279306411743},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3335103988647461},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3316444158554077},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2867507338523865},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1805310845375061},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11448022723197937},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008239","descriptor_name":"Lysine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04445-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04445-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04445-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34689734","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34689734","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:7434501","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8543953","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8543953","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8543953","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:60c4e588182241b5b84d4b8e7f61edea","is_oa":true,"landing_page_url":"https://doaj.org/article/60c4e588182241b5b84d4b8e7f61edea","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-15 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04445-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04445-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04445-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3152674478","display_name":null,"funder_award_id":"20210101174JC","funder_id":"https://openalex.org/F4320310121","funder_display_name":"Natural Science Foundation of Jilin Province"},{"id":"https://openalex.org/G3254547431","display_name":null,"funder_award_id":"61802057","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4102039166","display_name":null,"funder_award_id":"61802057","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7158696314","display_name":null,"funder_award_id":"JJKH20200330KJ","funder_id":"https://openalex.org/F4320326270","funder_display_name":"Education Department of Jilin Province"},{"id":"https://openalex.org/G8870332015","display_name":null,"funder_award_id":"20200201288JC","funder_id":"https://openalex.org/F4320310121","funder_display_name":"Natural Science Foundation of Jilin Province"}],"funders":[{"id":"https://openalex.org/F4320310121","display_name":"Natural Science Foundation of Jilin Province","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322174","display_name":"People's Government of Jilin Province","ror":"https://ror.org/02fzqav45"},{"id":"https://openalex.org/F4320326270","display_name":"Education Department of Jilin Province","ror":"https://ror.org/05782e512"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3211189534.pdf","grobid_xml":"https://content.openalex.org/works/W3211189534.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W28412257","https://openalex.org/W1975092906","https://openalex.org/W1979408355","https://openalex.org/W1992282307","https://openalex.org/W2003204068","https://openalex.org/W2008767710","https://openalex.org/W2013108773","https://openalex.org/W2022508996","https://openalex.org/W2029093937","https://openalex.org/W2037263319","https://openalex.org/W2043338013","https://openalex.org/W2051166632","https://openalex.org/W2060817283","https://openalex.org/W2076063813","https://openalex.org/W2080553628","https://openalex.org/W2091352656","https://openalex.org/W2097606916","https://openalex.org/W2129137060","https://openalex.org/W2132083787","https://openalex.org/W2145786566","https://openalex.org/W2152339342","https://openalex.org/W2161062388","https://openalex.org/W2166440816","https://openalex.org/W2169950973","https://openalex.org/W2187089797","https://openalex.org/W2208826165","https://openalex.org/W2230399809","https://openalex.org/W2471518332","https://openalex.org/W2561102035","https://openalex.org/W2594570929","https://openalex.org/W2742750032","https://openalex.org/W2748022024","https://openalex.org/W2894836881","https://openalex.org/W2901879913","https://openalex.org/W2903682118","https://openalex.org/W2919709896","https://openalex.org/W2936064937","https://openalex.org/W2952885417","https://openalex.org/W2971495873","https://openalex.org/W2978575375","https://openalex.org/W3020440546","https://openalex.org/W3020537178","https://openalex.org/W4211208250","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2053523004","https://openalex.org/W2001367558","https://openalex.org/W3032751721","https://openalex.org/W2088695563","https://openalex.org/W2164237668","https://openalex.org/W2091611701","https://openalex.org/W2064723340","https://openalex.org/W2018201204","https://openalex.org/W1971187521","https://openalex.org/W2768197807"],"abstract_inverted_index":{"BACKGROUND:":[0],"Several":[1],"computational":[2],"tools":[3],"for":[4,100],"predicting":[5],"protein":[6,45,58,64,87,103],"Ubiquitylation":[7,59,104,169],"and":[8,24,35,60,90,105,123,129,141,156,165,170],"SUMOylation":[9,61,106,122,171],"sites":[10,62,71,125],"have":[11],"been":[12],"proposed":[13,150],"to":[14,56,86,153],"study":[15,49],"their":[16,69,110,162],"regulatory":[17],"roles":[18],"in":[19],"gene":[20,22],"location,":[21],"expression,":[23],"genome":[25],"replication.":[26],"However,":[27],"existing":[28],"methods":[29],"generally":[30],"rely":[31],"on":[32,96,120,132],"feature":[33],"engineering,":[34],"ignore":[36],"the":[37,41,51],"natural":[38],"similarity":[39],"between":[40],"two":[42],"types":[43],"of":[44,117],"translational":[46],"modification.":[47],"This":[48],"is":[50],"first":[52],"all-in-one":[53],"deep":[54,74,83],"network":[55],"predict":[57],"from":[63],"sequences":[65],"as":[66,68,107,109],"well":[67,108],"crosstalk":[70,111,124,163],"simultaneously.":[72],"Our":[73],"learning":[75],"architecture":[76,151],"integrates":[77],"several":[78],"meta":[79],"classifiers":[80],"that":[81],"apply":[82],"neural":[84],"networks":[85],"sequence":[88],"information":[89],"physico-chemical":[91],"properties,":[92],"which":[93,143],"were":[94],"trained":[95],"multi-label":[97],"classification":[98],"mode":[99],"simultaneously":[101],"identifying":[102],"sites.":[112],"RESULTS:":[113],"The":[114,135,149],"promising":[115],"AUCs":[116],"our":[118,146],"method":[119],"Ubiquitylation,":[121],"achieved":[126],"0.838,":[127],"0.888,":[128],"0.862":[130],"respectively":[131],"tenfold":[133],"cross-validation.":[134],"corresponding":[136],"APs":[137],"reached":[138],"0.683,":[139],"0.804":[140],"0.552,":[142],"also":[144],"validated":[145],"effectiveness.":[147],"CONCLUSIONS:":[148],"managed":[152],"classify":[154],"ubiquitylated":[155],"SUMOylated":[157],"lysine":[158],"residues":[159],"along":[160],"with":[161],"sites,":[164],"outperformed":[166],"other":[167],"well-known":[168],"site":[172],"prediction":[173],"tools.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
