{"id":"https://openalex.org/W3197874656","doi":"https://doi.org/10.1186/s12859-021-04441-9","title":"adabmDCA: adaptive Boltzmann machine learning for biological sequences","display_name":"adabmDCA: adaptive Boltzmann machine learning for biological sequences","publication_year":2021,"publication_date":"2021-10-29","ids":{"openalex":"https://openalex.org/W3197874656","doi":"https://doi.org/10.1186/s12859-021-04441-9","mag":"3197874656","pmid":"https://pubmed.ncbi.nlm.nih.gov/34715775"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04441-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04441-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04441-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04441-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013351324","display_name":"Anna Paola Muntoni","orcid":"https://orcid.org/0000-0003-3937-3763"},"institutions":[{"id":"https://openalex.org/I4210123319","display_name":"Italian institute for Genomic Medicine","ror":"https://ror.org/036054d36","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210123319"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Anna Paola Muntoni","raw_affiliation_strings":["Statistical Inference and Biological Modeling Group, Italian Institute for Genomic Medicine, Candiolo, Italy. anna.muntoni@polito.it","Statistical Inference and Biological Modeling Group, Italian Institute for Genomic Medicine, Candiolo, Italy"],"affiliations":[{"raw_affiliation_string":"Statistical Inference and Biological Modeling Group, Italian Institute for Genomic Medicine, Candiolo, Italy. anna.muntoni@polito.it","institution_ids":[]},{"raw_affiliation_string":"Statistical Inference and Biological Modeling Group, Italian Institute for Genomic Medicine, Candiolo, Italy","institution_ids":["https://openalex.org/I4210123319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011435835","display_name":"Andrea Pagnani","orcid":"https://orcid.org/0000-0002-6509-0807"},"institutions":[{"id":"https://openalex.org/I177477856","display_name":"Polytechnic University of Turin","ror":"https://ror.org/00bgk9508","country_code":"IT","type":"education","lineage":["https://openalex.org/I177477856"]},{"id":"https://openalex.org/I4210123319","display_name":"Italian institute for Genomic Medicine","ror":"https://ror.org/036054d36","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210123319"]},{"id":"https://openalex.org/I4210099850","display_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Torino","ror":"https://ror.org/01vj6ck58","country_code":"IT","type":"facility","lineage":["https://openalex.org/I160013858","https://openalex.org/I4210099850"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Pagnani","raw_affiliation_strings":["Department of Applied Science and Technology, Politecnico di Torino, Turin, Italy","Sezione di Torino, Istituto Nazionale Fisica Nucleare, Turin, Italy","Statistical Inference and Biological Modeling Group, Italian Institute for Genomic Medicine, Candiolo, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Applied Science and Technology, Politecnico di Torino, Turin, Italy","institution_ids":["https://openalex.org/I177477856"]},{"raw_affiliation_string":"Sezione di Torino, Istituto Nazionale Fisica Nucleare, Turin, Italy","institution_ids":["https://openalex.org/I4210099850"]},{"raw_affiliation_string":"Statistical Inference and Biological Modeling Group, Italian Institute for Genomic Medicine, Candiolo, Italy","institution_ids":["https://openalex.org/I4210123319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035771024","display_name":"Martin Weigt","orcid":"https://orcid.org/0000-0002-0492-3684"},"institutions":[{"id":"https://openalex.org/I4210107326","display_name":"Institut de Biologie Paris-Seine","ror":"https://ror.org/01c2cjg59","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210107326"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Laboratoire de Biologie Computationnelle et Quantitative","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Martin Weigt","raw_affiliation_strings":["Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative LCQB, CNRS, Sorbonne Universit\u00e9, Paris, France"],"affiliations":[{"raw_affiliation_string":"Institut de Biologie Paris Seine, Biologie Computationnelle et Quantitative LCQB, CNRS, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I4210107326","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022080437","display_name":"Francesco Zamponi","orcid":"https://orcid.org/0000-0001-9260-1951"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francesco Zamponi","raw_affiliation_strings":["Laboratoire de Physique de l'Ecole Normale Sup\u00e9rieure, ENS, CNRS, Universit\u00e9 PSL, Sorbonne Universit\u00e9, Universit\u00e9 de Paris, Paris, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Physique de l'Ecole Normale Sup\u00e9rieure, ENS, CNRS, Universit\u00e9 PSL, Sorbonne Universit\u00e9, Universit\u00e9 de Paris, Paris, France","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013351324"],"corresponding_institution_ids":["https://openalex.org/I4210123319"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08418498,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"1","first_page":"528","last_page":"528"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/boltzmann-machine","display_name":"Boltzmann machine","score":0.7368173003196716},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6833977699279785},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5915110111236572},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5141637325286865},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.49731186032295227},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3482203483581543},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3213464319705963},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.2789510488510132}],"concepts":[{"id":"https://openalex.org/C192576344","wikidata":"https://www.wikidata.org/wiki/Q194706","display_name":"Boltzmann machine","level":3,"score":0.7368173003196716},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6833977699279785},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5915110111236572},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5141637325286865},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.49731186032295227},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3482203483581543},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3213464319705963},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2789510488510132}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12859-021-04441-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04441-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04441-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34715775","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34715775","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:2109.04105","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2109.04105","pdf_url":"https://arxiv.org/pdf/2109.04105","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:HAL:hal-03410137v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03410137","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04441-9","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:79f58c0ef7fa43cbb4914ca48a168964","is_oa":true,"landing_page_url":"https://doaj.org/article/79f58c0ef7fa43cbb4914ca48a168964","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-19 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:7444126","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8555268","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8555268","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8555268","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.48550/arxiv.2109.04105","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2109.04105","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"mag:3197874656","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04441-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04441-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04441-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6800000071525574,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1045048708","display_name":null,"funder_award_id":"454955","funder_id":"https://openalex.org/F4320306164","funder_display_name":"Simons Foundation"},{"id":"https://openalex.org/G1366071995","display_name":null,"funder_award_id":"734439 InferNet","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G1689839662","display_name":null,"funder_award_id":"#454955","funder_id":"https://openalex.org/F4320306164","funder_display_name":"Simons Foundation"},{"id":"https://openalex.org/G3878940427","display_name":null,"funder_award_id":"MSCA-RISE-2016","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G5859239756","display_name":null,"funder_award_id":"MSCA-RISE","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6794681033","display_name":null,"funder_award_id":"45495","funder_id":"https://openalex.org/F4320306164","funder_display_name":"Simons Foundation"},{"id":"https://openalex.org/G7331901853","display_name":null,"funder_award_id":"EU H2020","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7570497131","display_name":null,"funder_award_id":"#454955, Francesco Zamponi","funder_id":"https://openalex.org/F4320306164","funder_display_name":"Simons Foundation"},{"id":"https://openalex.org/G8886304095","display_name":null,"funder_award_id":"734439","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320306164","display_name":"Simons Foundation","ror":"https://ror.org/01cmst727"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3197874656.pdf","grobid_xml":"https://content.openalex.org/works/W3197874656.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1861406683","https://openalex.org/W1951660422","https://openalex.org/W1979762151","https://openalex.org/W2008545402","https://openalex.org/W2020999234","https://openalex.org/W2032558547","https://openalex.org/W2042492924","https://openalex.org/W2044028691","https://openalex.org/W2056760934","https://openalex.org/W2116064496","https://openalex.org/W2130710252","https://openalex.org/W2137566700","https://openalex.org/W2138309709","https://openalex.org/W2147526198","https://openalex.org/W2155677642","https://openalex.org/W2245592118","https://openalex.org/W2405601855","https://openalex.org/W2416642098","https://openalex.org/W2593641128","https://openalex.org/W2766955268","https://openalex.org/W2783644078","https://openalex.org/W2903660030","https://openalex.org/W2913954081","https://openalex.org/W2967606876","https://openalex.org/W2971733377","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3017194351","https://openalex.org/W3044778276","https://openalex.org/W3095583226","https://openalex.org/W3100163799","https://openalex.org/W3100264342","https://openalex.org/W3100348855","https://openalex.org/W3129222977","https://openalex.org/W3164698142","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W4255825300","https://openalex.org/W6968994498"],"related_works":["https://openalex.org/W2145350307","https://openalex.org/W3100264342","https://openalex.org/W3164993685","https://openalex.org/W2165583827","https://openalex.org/W1496233740","https://openalex.org/W2039359327","https://openalex.org/W2996705485","https://openalex.org/W2169478909","https://openalex.org/W3135175179","https://openalex.org/W2952120503","https://openalex.org/W1894180423","https://openalex.org/W1540530720","https://openalex.org/W2806093192","https://openalex.org/W3014154699","https://openalex.org/W2402457502","https://openalex.org/W2979530943","https://openalex.org/W3088395980","https://openalex.org/W1974429394","https://openalex.org/W2095785277","https://openalex.org/W2507185778"],"abstract_inverted_index":{"The":[0],"models":[1],"learned":[2],"by":[3,10],"adabmDCA":[4],"are":[5],"comparable":[6],"to":[7],"those":[8],"obtained":[9],"state-of-the-art":[11],"techniques":[12],"for":[13,46,65],"this":[14],"task,":[15],"in":[16,58],"terms":[17,59],"of":[18,21,29,60],"the":[19,22,30,36,53],"quality":[20],"inferred":[23],"contact":[24],"map":[25],"as":[26,28],"well":[27],"synthetically":[31],"generated":[32],"sequences.":[33],"In":[34],"addition,":[35],"code":[37],"implements":[38],"both":[39],"equilibrium":[40,54],"and":[41,49,63],"out-of-equilibrium":[42],"learning,":[43],"which":[44],"allows":[45,64],"an":[47,70],"accurate":[48],"lossless":[50],"training":[51],"when":[52],"one":[55],"is":[56],"prohibitive":[57],"computational":[61],"time,":[62],"pruning":[66],"irrelevant":[67],"parameters":[68],"using":[69],"information-based":[71],"criterion.":[72]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
