{"id":"https://openalex.org/W3205525370","doi":"https://doi.org/10.1186/s12859-021-04408-w","title":"CoolBox: a flexible toolkit for visual analysis of genomics data","display_name":"CoolBox: a flexible toolkit for visual analysis of genomics data","publication_year":2021,"publication_date":"2021-10-10","ids":{"openalex":"https://openalex.org/W3205525370","doi":"https://doi.org/10.1186/s12859-021-04408-w","mag":"3205525370","pmid":"https://pubmed.ncbi.nlm.nih.gov/34629071"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04408-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04408-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04408-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04408-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103211372","display_name":"Weize Xu","orcid":"https://orcid.org/0000-0002-3903-0683"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weize Xu","raw_affiliation_strings":["College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102005614","display_name":"Quan Zhong","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zhong","raw_affiliation_strings":["College of Informatics, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086818276","display_name":"Da Lin","orcid":"https://orcid.org/0000-0003-0585-821X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Da Lin","raw_affiliation_strings":["College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100949739","display_name":"Ya Zuo","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ya Zuo","raw_affiliation_strings":["College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027289296","display_name":"Jinxia Dai","orcid":"https://orcid.org/0000-0001-7060-5185"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinxia Dai","raw_affiliation_strings":["College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100404163","display_name":"Guoliang Li","orcid":"https://orcid.org/0000-0003-1601-6640"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Guoliang Li","raw_affiliation_strings":["College of Bio-Medicine and Health, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","College of Informatics, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","Hubei Key Laboratory of Agricultural Bioinformatics, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","College of Informatics, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bio-Medicine and Health, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, Hubei Engineering Technology Research Center of Agricultural Big Data, 3D Genomics Research Center, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, China. guoliang.li@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036055830","display_name":"Gang Cao","orcid":"https://orcid.org/0000-0003-0761-7305"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Gang Cao","raw_affiliation_strings":["College of Bio-Medicine and Health, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","College of Informatics, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Bio-Medicine and Health, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China. gcao@mail.hzau.edu.cn","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5036055830","https://openalex.org/A5100404163"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.0811,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.96573737,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"489","last_page":"489"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.5989999771118164,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.5989999771118164,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.10989999771118164,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.07129999995231628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.6114981770515442},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5680044889450073},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5607133507728577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5214970707893372},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37321192026138306},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31757402420043945},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.251886785030365},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19577255845069885},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09065327048301697},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08797633647918701}],"concepts":[{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.6114981770515442},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5680044889450073},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5607133507728577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5214970707893372},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37321192026138306},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31757402420043945},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.251886785030365},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19577255845069885},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09065327048301697},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08797633647918701}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04408-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04408-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04408-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34629071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34629071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4fe96e36de97404e9d32c67181c523bd","is_oa":true,"landing_page_url":"https://doaj.org/article/4fe96e36de97404e9d32c67181c523bd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-9 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:7430375","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8504052","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8504052","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8504052","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04408-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04408-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04408-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1093444841","display_name":null,"funder_award_id":"31941005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G109684015","display_name":null,"funder_award_id":"2019M662676","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G3992755357","display_name":null,"funder_award_id":"31941014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4669741688","display_name":null,"funder_award_id":"31702196","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G508729098","display_name":null,"funder_award_id":"2019B020211003","funder_id":"https://openalex.org/F4320336405","funder_display_name":"Special Project for Research and Development in Key areas of Guangdong Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320336405","display_name":"Special Project for Research and Development in Key areas of Guangdong Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3205525370.pdf","grobid_xml":"https://content.openalex.org/works/W3205525370.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1587026990","https://openalex.org/W1915573037","https://openalex.org/W2015553373","https://openalex.org/W2059699217","https://openalex.org/W2078644058","https://openalex.org/W2090037139","https://openalex.org/W2117757143","https://openalex.org/W2127935186","https://openalex.org/W2129785061","https://openalex.org/W2142386149","https://openalex.org/W2481029670","https://openalex.org/W2523285811","https://openalex.org/W2741662224","https://openalex.org/W2807565449","https://openalex.org/W2888200508","https://openalex.org/W2888425844","https://openalex.org/W2951856336","https://openalex.org/W2955816935","https://openalex.org/W2960230796","https://openalex.org/W2960979937","https://openalex.org/W3012113614","https://openalex.org/W3034597903","https://openalex.org/W3041895828","https://openalex.org/W3046950215","https://openalex.org/W3091538767","https://openalex.org/W3092857332","https://openalex.org/W3093674228"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2053972265"],"abstract_inverted_index":{"BACKGROUND:":[0],"Data":[1],"visualization,":[2],"especially":[3],"the":[4,31,49,55,63,84,143],"genome":[5,112],"track":[6,113],"plots,":[7],"is":[8,80],"crucial":[9],"for":[10,25,71],"genomics":[11,75],"researchers":[12],"to":[13,41,57,109,129,142,171],"discover":[14],"patterns":[15],"in":[16,98,180],"large-scale":[17],"sequencing":[18],"dataset.":[19,64],"Although":[20],"existing":[21],"tools":[22],"works":[23],"well":[24],"producing":[26],"a":[27,90,103,123,181],"normal":[28],"view":[29],"of":[30,62,74],"input":[32],"data,":[33],"they":[34],"are":[35],"not":[36],"convenient":[37],"when":[38],"users":[39,56,150,170],"want":[40],"create":[42],"customized":[43],"data":[44,52,120,132,164,179],"representations.":[45],"Such":[46],"gap":[47],"between":[48],"visualization":[50,100,165,174],"and":[51,87,176,184],"processing,":[53],"prevents":[54],"uncover":[58],"more":[59],"hidden":[60],"structure":[61],"RESULTS:":[65],"We":[66],"developed":[67],"CoolBox-an":[68],"open-source":[69],"toolkit":[70,79],"visual":[72],"analysis":[73],"data.":[76],"This":[77],"user-friendly":[78,185],"highly":[81,144],"compatible":[82],"with":[83,89,122],"Python":[85,124],"ecosystem":[86],"customizable":[88],"well-designed":[91],"user":[92],"interface.":[93],"It":[94],"can":[95,151],"be":[96],"used":[97,118],"various":[99],"situations":[101],"like":[102],"Swiss":[104],"army":[105],"knife.":[106],"For":[107],"example,":[108],"produce":[110,172],"high-quality":[111,173],"plots":[114,175],"or":[115,126,137],"fetch":[116],"commonly":[117],"genomic":[119,131,163],"files":[121],"script":[125],"command":[127],"line,":[128],"explore":[130,177],"interactively":[133],"within":[134],"Jupyter":[135],"environment":[136],"web":[138],"browser.":[139],"Moreover,":[140],"owing":[141],"extensible":[145],"Application":[146],"Programming":[147],"Interface":[148],"design,":[149],"customize":[152],"their":[153,178],"own":[154],"tracks":[155],"without":[156],"difficulty,":[157],"which":[158],"greatly":[159],"facilitate":[160],"analytical,":[161],"comparative":[162],"tasks.":[166],"CONCLUSIONS:":[167],"CoolBox":[168],"allows":[169],"flexible,":[182],"programmable":[183],"way.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-03T08:13:44.112507","created_date":"2025-10-10T00:00:00"}
