{"id":"https://openalex.org/W3203992883","doi":"https://doi.org/10.1186/s12859-021-04394-z","title":"multiMarker: software for modelling and prediction of continuous food intake using multiple biomarkers measurements","display_name":"multiMarker: software for modelling and prediction of continuous food intake using multiple biomarkers measurements","publication_year":2021,"publication_date":"2021-09-28","ids":{"openalex":"https://openalex.org/W3203992883","doi":"https://doi.org/10.1186/s12859-021-04394-z","mag":"3203992883","pmid":"https://pubmed.ncbi.nlm.nih.gov/34583648"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04394-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04394-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04394-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04394-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091711482","display_name":"Silvia D\u2019Angelo","orcid":"https://orcid.org/0000-0003-3541-6797"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Silvia D\u2019Angelo","raw_affiliation_strings":["Insight Centre for Data Analytics, University College Dublin, Dublin, Ireland","School of Mathematics and Statistics, University College Dublin, Dublin, Ireland"],"raw_orcid":"https://orcid.org/0000-0003-3541-6797","affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"School of Mathematics and Statistics, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033957848","display_name":"Isobel Claire Gormley","orcid":"https://orcid.org/0000-0001-7713-681X"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Isobel Claire Gormley","raw_affiliation_strings":["Insight Centre for Data Analytics, University College Dublin, Dublin, Ireland","School of Mathematics and Statistics, University College Dublin, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insight Centre for Data Analytics, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"School of Mathematics and Statistics, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076810749","display_name":"A. McNamara","orcid":"https://orcid.org/0000-0002-1482-9210"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Aoife E. McNamara","raw_affiliation_strings":["School of Agriculture and Food Science, Institute of Food and Health, University College Dublin, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Agriculture and Food Science, Institute of Food and Health, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003874766","display_name":"Lorraine Brennan","orcid":"https://orcid.org/0000-0002-7711-7499"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Lorraine Brennan","raw_affiliation_strings":["Conway Institute, University College Dublin, Dublin, Ireland","School of Agriculture and Food Science, Institute of Food and Health, University College Dublin, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Conway Institute, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]},{"raw_affiliation_string":"School of Agriculture and Food Science, Institute of Food and Health, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5091711482"],"corresponding_institution_ids":["https://openalex.org/I100930933"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.5692,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.69812649,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"22","issue":"1","first_page":"469","last_page":"469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10866","display_name":"Nutritional Studies and Diet","score":0.6607000231742859,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10866","display_name":"Nutritional Studies and Diet","score":0.6607000231742859,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.26910001039505005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.01810000091791153,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/food-intake","display_name":"Food intake","score":0.6333147883415222},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.5618751049041748},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5347681641578674},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5260025262832642},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43720343708992004},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4288032650947571},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.42424941062927246},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3314315676689148},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30013445019721985},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.18753531575202942},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16958805918693542}],"concepts":[{"id":"https://openalex.org/C3018685816","wikidata":"https://www.wikidata.org/wiki/Q213449","display_name":"Food intake","level":2,"score":0.6333147883415222},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.5618751049041748},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5347681641578674},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5260025262832642},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43720343708992004},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4288032650947571},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.42424941062927246},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3314315676689148},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30013445019721985},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.18753531575202942},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16958805918693542},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004435","descriptor_name":"Eating","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004435","descriptor_name":"Eating","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004435","descriptor_name":"Eating","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04394-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04394-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04394-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34583648","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34583648","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:7375564","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC8480054","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8480054","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8480054","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:b317a0fa68a44a2d9729bd42028f62cf","is_oa":true,"landing_page_url":"https://doaj.org/article/b317a0fa68a44a2d9729bd42028f62cf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-9 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04394-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04394-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04394-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G2485930100","display_name":null,"funder_award_id":"647783","funder_id":"https://openalex.org/F4320334678","funder_display_name":"European Research Council"},{"id":"https://openalex.org/G639259897","display_name":null,"funder_award_id":"SFI/12/RC/2289\u02d9P2","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320334678","display_name":"European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3203992883.pdf","grobid_xml":"https://content.openalex.org/works/W3203992883.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1986503026","https://openalex.org/W2002738268","https://openalex.org/W2041984497","https://openalex.org/W2060542838","https://openalex.org/W2110263387","https://openalex.org/W2147368905","https://openalex.org/W2150884987","https://openalex.org/W2274273935","https://openalex.org/W2540474045","https://openalex.org/W2609165410","https://openalex.org/W2956162008","https://openalex.org/W2995423036","https://openalex.org/W3015120321","https://openalex.org/W3033781410","https://openalex.org/W3197672892","https://openalex.org/W4292494783"],"related_works":["https://openalex.org/W4283390424","https://openalex.org/W2137270828","https://openalex.org/W1976072307","https://openalex.org/W4205440119","https://openalex.org/W1561393703","https://openalex.org/W4292104203","https://openalex.org/W2040768604","https://openalex.org/W2096576371","https://openalex.org/W3135636879","https://openalex.org/W3041970450"],"abstract_inverted_index":{"BACKGROUND:":[0],"Metabolomic":[1],"biomarkers":[2,19,33,58,141],"offer":[3],"potential":[4],"for":[5,118,142],"objective":[6],"and":[7,12,42,59,88,130,184,208],"reliable":[8],"food":[9,61,86,99,121,181],"intake":[10,62,87,100,122,182],"assessment,":[11],"there":[13,46],"is":[14,47,134,148],"growing":[15],"interest":[16],"in":[17,20,120,150],"using":[18,136],"place":[21],"of":[22,50,98,113,125,168,197],"or":[23,90],"with":[24,36,174],"traditional":[25],"self-reported":[26],"approaches.":[27],"Ongoing":[28],"research":[29],"suggests":[30],"that":[31,78],"multiple":[32,57,191],"are":[34],"associated":[35,188],"single":[37,60],"foods,":[38],"offering":[39],"great":[40],"sensitivity":[41],"specificity.":[43],"However,":[44],"currently":[45],"a":[48,69,175,209],"dearth":[49],"methods":[51],"to":[52,81,154,157,178,185],"model":[53],"the":[54,74,83,127,131,151,166,198],"relationship":[55,84],"between":[56,85],"measurements.":[63],"RESULTS:":[64],"Here,":[65],"we":[66],"introduce":[67],"multiMarker,":[68],"web-based":[70],"application":[71,133,153],"based":[72],"on":[73],"homonymous":[75],"R":[76,128,206],"package,":[77],"enables":[79],"one":[80],"infer":[82],"two":[89],"more":[91],"metabolomic":[92],"biomarkers.":[93,192],"Furthermore,":[94],"multiMarker":[95,105,200],"allows":[96],"prediction":[97],"from":[101,107,190],"biomarker":[102],"data":[103,138,147],"alone.":[104],"differs":[106],"previous":[108],"approaches":[109],"by":[110],"providing":[111,172],"distributions":[112],"predicted":[114],"intakes,":[115],"directly":[116],"accounting":[117],"uncertainty":[119],"quantification.":[123],"Usage":[124],"both":[126],"package":[129,207],"web":[132,152,211],"demonstrated":[135],"real":[137],"concerning":[139],"three":[140],"orange":[143],"intake.":[144],"Further,":[145],"example":[146],"pre-loaded":[149],"enable":[155],"users":[156],"examine":[158],"multiMarker's":[159],"functionality.":[160],"CONCLUSION:":[161],"The":[162],"proposed":[163],"software":[164],"advance":[165],"field":[167],"Food":[169],"Intake":[170],"Biomarkers":[171],"researchers":[173],"novel":[176],"tool":[177],"perform":[179],"continuous":[180],"quantification,":[183],"assess":[186],"its":[187],"uncertainty,":[189],"To":[193],"facilitate":[194],"widespread":[195],"use":[196],"framework,":[199],"has":[201],"been":[202],"implemented":[203],"as":[204],"an":[205],"Shiny":[210],"application.":[212]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
