{"id":"https://openalex.org/W3198540829","doi":"https://doi.org/10.1186/s12859-021-04336-9","title":"Reproducibility of mass spectrometry based metabolomics data","display_name":"Reproducibility of mass spectrometry based metabolomics data","publication_year":2021,"publication_date":"2021-09-07","ids":{"openalex":"https://openalex.org/W3198540829","doi":"https://doi.org/10.1186/s12859-021-04336-9","mag":"3198540829","pmid":"https://pubmed.ncbi.nlm.nih.gov/34493210"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04336-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04336-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04336-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04336-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000295265","display_name":"Tusharkanti Ghosh","orcid":"https://orcid.org/0000-0002-7537-6374"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tusharkanti Ghosh","raw_affiliation_strings":["Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA. tusharkanti.ghosh@cuanschutz.edu","Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA. tusharkanti.ghosh@cuanschutz.edu","institution_ids":["https://openalex.org/I151808059","https://openalex.org/I51713134"]},{"raw_affiliation_string":"Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA","institution_ids":["https://openalex.org/I151808059","https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088996351","display_name":"Daisy Philtron","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daisy Philtron","raw_affiliation_strings":["Eberly College of Science, Penn State University, State College, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Eberly College of Science, Penn State University, State College, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101756435","display_name":"Weiming Zhang","orcid":"https://orcid.org/0000-0002-1953-4016"},"institutions":[{"id":"https://openalex.org/I4210105783","display_name":"Syneos Health (United States)","ror":"https://ror.org/01r74wp43","country_code":"US","type":"company","lineage":["https://openalex.org/I4210105783"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weiming Zhang","raw_affiliation_strings":["Syneos Health, Morrisville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Syneos Health, Morrisville, USA","institution_ids":["https://openalex.org/I4210105783"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022404035","display_name":"Katerina Kechris","orcid":"https://orcid.org/0000-0002-3725-5459"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katerina Kechris","raw_affiliation_strings":["Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA","institution_ids":["https://openalex.org/I151808059","https://openalex.org/I51713134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100625252","display_name":"Debashis Ghosh","orcid":"https://orcid.org/0000-0001-6618-1316"},"institutions":[{"id":"https://openalex.org/I151808059","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035","country_code":"US","type":"education","lineage":["https://openalex.org/I151808059"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debashis Ghosh","raw_affiliation_strings":["Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Colorado School of Public Health, University of Colorado, Anschutz Medical Campus, Aurora, USA","institution_ids":["https://openalex.org/I151808059","https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000295265"],"corresponding_institution_ids":["https://openalex.org/I151808059","https://openalex.org/I51713134"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.8866,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.92486572,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"423","last_page":"423"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.904044508934021},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.8259142637252808},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.7195262908935547},{"id":"https://openalex.org/keywords/nonparametric-statistics","display_name":"Nonparametric statistics","score":0.5476582646369934},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4737682640552521},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4263418912887573},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3507307767868042},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27762728929519653},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.2716279625892639},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2426845133304596},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20542818307876587}],"concepts":[{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.904044508934021},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.8259142637252808},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.7195262908935547},{"id":"https://openalex.org/C102366305","wikidata":"https://www.wikidata.org/wiki/Q1097688","display_name":"Nonparametric statistics","level":2,"score":0.5476582646369934},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4737682640552521},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4263418912887573},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3507307767868042},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27762728929519653},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2716279625892639},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2426845133304596},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20542818307876587}],"mesh":[{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-021-04336-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04336-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04336-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34493210","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34493210","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fbd6f05e7d29414b9ff245a1633d4f3f","is_oa":true,"landing_page_url":"https://doaj.org/article/fbd6f05e7d29414b9ff245a1633d4f3f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-25 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8424977","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8424977","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04336-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04336-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04336-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.800000011920929}],"awards":[{"id":"https://openalex.org/G2644038179","display_name":null,"funder_award_id":"U01 HL089897","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G3124021205","display_name":null,"funder_award_id":"U01 CA235488","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4662854118","display_name":null,"funder_award_id":"U01 HL089897 and U01 HL089856","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4808125904","display_name":null,"funder_award_id":"P20 HL113445","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5258357286","display_name":null,"funder_award_id":"HL089897","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5400420060","display_name":null,"funder_award_id":"HL089897","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5861375725","display_name":null,"funder_award_id":"U01 HL089856","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5907906271","display_name":null,"funder_award_id":"U01 CA235488","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6257285610","display_name":null,"funder_award_id":"U01 HL089856","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6470844488","display_name":null,"funder_award_id":"U01 HL089897","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7948161897","display_name":null,"funder_award_id":"HL089856","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G820522361","display_name":null,"funder_award_id":"U01 HL089897 and U01 HL089856","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8354759825","display_name":null,"funder_award_id":"HL089856","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337869","display_name":"Colorado School of Public Health","ror":"https://ror.org/005x9g035"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3198540829.pdf","grobid_xml":"https://content.openalex.org/works/W3198540829.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1980270094","https://openalex.org/W1981106668","https://openalex.org/W2000403772","https://openalex.org/W2062551369","https://openalex.org/W2062872865","https://openalex.org/W2081942683","https://openalex.org/W2082907106","https://openalex.org/W2086500586","https://openalex.org/W2096088529","https://openalex.org/W2099598705","https://openalex.org/W2105701655","https://openalex.org/W2108222459","https://openalex.org/W2110065044","https://openalex.org/W2111115065","https://openalex.org/W2117616888","https://openalex.org/W2121211805","https://openalex.org/W2131463690","https://openalex.org/W2133740866","https://openalex.org/W2134696273","https://openalex.org/W2141009231","https://openalex.org/W2146273335","https://openalex.org/W2149309843","https://openalex.org/W2151518631","https://openalex.org/W2156983744","https://openalex.org/W2167942713","https://openalex.org/W2587908717","https://openalex.org/W2603590667","https://openalex.org/W2725788675","https://openalex.org/W2743576058","https://openalex.org/W2763572134","https://openalex.org/W2766240471","https://openalex.org/W2769101592","https://openalex.org/W2803664483","https://openalex.org/W2811167973","https://openalex.org/W2901012590","https://openalex.org/W2901402567","https://openalex.org/W2917820023","https://openalex.org/W2920154786","https://openalex.org/W2920973450","https://openalex.org/W2920975771","https://openalex.org/W2920986554","https://openalex.org/W2950625953","https://openalex.org/W2979573534","https://openalex.org/W2990667518","https://openalex.org/W3104066961","https://openalex.org/W4294439991","https://openalex.org/W6600514347","https://openalex.org/W6610429496"],"related_works":["https://openalex.org/W4254851101","https://openalex.org/W3171007296","https://openalex.org/W22115721","https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2321234655","https://openalex.org/W2065444835","https://openalex.org/W4394550905","https://openalex.org/W2417696084","https://openalex.org/W2368782778"],"abstract_inverted_index":{"BACKGROUND:":[0],"Assessing":[1],"the":[2,13,56,96,124,141,154,174,179,205,231,234,237,256,274,283,296,318,337,352],"reproducibility":[3,64,72,162,264,338],"of":[4,15,18,110,130,145,171,224,226,240,263,320,339],"measurements":[5],"is":[6,358],"an":[7],"important":[8],"first":[9],"step":[10],"for":[11,195,213,221,245,265],"improving":[12],"reliability":[14],"downstream":[16],"analyses":[17],"high-throughput":[19],"metabolomics":[20,68,83],"experiments.":[21,35,69],"We":[22,70,88],"define":[23],"a":[24,91,104,187,260,314,332],"metabolite":[25],"to":[26,62,100,160,209,250,269,290,312,323,335],"be":[27,45,288,313],"reproducible":[28,99,131,215,227,241],"when":[29,184],"it":[30,117],"demonstrates":[31],"consistency":[32],"across":[33,42,73,163,272],"replicate":[34,193],"Similarly,":[36],"metabolites":[37,216],"which":[38,309,357],"are":[39,247,349],"not":[40,119],"consistent":[41],"replicates":[43,267,271],"can":[44,287],"labeled":[46],"as":[47],"irreproducible.":[48],"In":[49,278,327],"this":[50,328,347],"work,":[51],"we":[52,152,280,330],"introduce":[53],"and":[54,236,294],"evaluate":[55],"use":[57,319],"(Ma)ximum":[58],"(R)ank":[59],"(R)eproducibility":[60],"(MaRR)":[61],"examine":[63,71],"in":[65,78,140,190,217,317,346,351],"mass":[66,81],"spectrometry-based":[67],"technical":[74,164,266],"or":[75,127,165],"biological":[76,166,270],"samples":[77],"three":[79,134,275],"different":[80,276],"spectrometry":[82],"(MS-Metabolomics)":[84],"data":[85,137,158,258,341],"sets.":[86,342],"RESULTS:":[87],"apply":[89],"MaRR,":[90],"nonparametric":[92,297],"approach":[93,298,334],"that":[94,116,204,282,295],"detects":[95],"change":[97],"from":[98,255,361],"irreproducible":[101],"signals":[102],"using":[103,111],"maximal":[105],"rank":[106],"statistic.":[107],"The":[108,252,343],"advantage":[109],"MaRR":[112,155,175,206,284],"over":[113],"model-based":[114],"methods":[115,344],"does":[118],"make":[120],"parametric":[121],"assumptions":[122],"on":[123],"underlying":[125],"distributions":[126],"dependence":[128],"structures":[129],"metabolites.":[132,228],"Using":[133],"MS":[135],"Metabolomics":[136],"sets":[138],"generated":[139],"multi-center":[142],"Genetic":[143],"Epidemiology":[144],"Chronic":[146],"Obstructive":[147],"Pulmonary":[148],"Disease":[149],"(COPD)":[150],"study,":[151],"applied":[153],"procedure":[156,176,207,285],"after":[157],"processing":[159],"explore":[161],"samples.":[167],"Under":[168],"realistic":[169],"settings":[170],"MS-Metabolomics":[172,340],"data,":[173],"effectively":[177],"controls":[178],"False":[180],"Discovery":[181],"Rate":[182],"(FDR)":[183],"there":[185],"was":[186,305],"gradual":[188],"reduction":[189],"correlation":[191],"between":[192,233],"pairs":[194],"less":[196],"highly":[197],"ranked":[198],"signals.":[199],"Simulation":[200],"studies":[201],"also":[202,248],"show":[203,259],"tends":[208],"have":[210],"high":[211],"power":[212],"detecting":[214],"most":[218],"situations":[219],"except":[220],"smaller":[222],"values":[223,244],"proportion":[225],"Bias":[229],"(i.e.,":[230],"difference":[232],"estimated":[235],"true":[238],"value":[239],"signal":[242],"proportions)":[243],"simulations":[246],"close":[249],"zero.":[251],"results":[253],"reported":[254],"real":[257],"higher":[261],"level":[262],"compared":[268],"all":[273],"datasets.":[277],"summary,":[279],"demonstrate":[281],"application":[286],"adapted":[289],"various":[291],"experimental":[292],"designs,":[293],"performs":[299],"consistently":[300],"well.":[301],"CONCLUSIONS:":[302],"This":[303],"research":[304],"motivated":[306],"by":[307],"reproducibility,":[308],"has":[310],"proven":[311],"major":[315],"obstacle":[316],"genomic":[321],"findings":[322],"advance":[324],"clinical":[325],"practice.":[326],"paper,":[329],"developed":[331],"data-driven":[333],"assess":[336],"described":[345],"paper":[348],"implemented":[350],"open-source":[353],"R":[354],"package":[355],"marr,":[356],"freely":[359],"available":[360],"Bioconductor":[362],"at":[363],"http://bioconductor.org/packages/marr":[364],".":[365]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
