{"id":"https://openalex.org/W3195566912","doi":"https://doi.org/10.1186/s12859-021-04315-0","title":"Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data","display_name":"Immunopeptidomics toolkit library (IPTK): a python-based modular toolbox for analyzing immunopeptidomics data","publication_year":2021,"publication_date":"2021-08-17","ids":{"openalex":"https://openalex.org/W3195566912","doi":"https://doi.org/10.1186/s12859-021-04315-0","mag":"3195566912","pmid":"https://pubmed.ncbi.nlm.nih.gov/34404349"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04315-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04315-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-021-04315-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-021-04315-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079571102","display_name":"Hesham ElAbd","orcid":"https://orcid.org/0000-0003-1844-8279"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hesham ElAbd","raw_affiliation_strings":["Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034354112","display_name":"Frauke Degenhardt","orcid":"https://orcid.org/0000-0001-7516-3179"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frauke Degenhardt","raw_affiliation_strings":["Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077010870","display_name":"Tom\u00e1\u0161 Koudelka","orcid":"https://orcid.org/0000-0002-1972-2068"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tomas Koudelka","raw_affiliation_strings":["Proteomics and Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Proteomics and Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061689239","display_name":"Ann-Kristin Kamps","orcid":null},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ann-Kristin Kamps","raw_affiliation_strings":["Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","Institute of Immunology, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]},{"raw_affiliation_string":"Institute of Immunology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066052190","display_name":"Andreas Tholey","orcid":"https://orcid.org/0000-0002-8687-6817"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Tholey","raw_affiliation_strings":["Proteomics and Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Proteomics and Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023203593","display_name":"Petra B\u00e4cher","orcid":"https://orcid.org/0000-0003-4264-6451"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Petra Bacher","raw_affiliation_strings":["Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","Institute of Immunology, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]},{"raw_affiliation_string":"Institute of Immunology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102829949","display_name":"Tobias L. Lenz","orcid":"https://orcid.org/0000-0002-7203-0044"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias L. Lenz","raw_affiliation_strings":["Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Unit for Evolutionary Immunogenomics, Department of Biology, University of Hamburg, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073345578","display_name":"Andr\u00e9 Franke","orcid":"https://orcid.org/0000-0003-1530-5811"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Andre Franke","raw_affiliation_strings":["Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany. a.franke@mucosa.de","Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1530-5811","affiliations":[{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany. a.franke@mucosa.de","institution_ids":["https://openalex.org/I32021983"]},{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012632196","display_name":"Mareike Wendorff","orcid":"https://orcid.org/0000-0001-8185-8516"},"institutions":[{"id":"https://openalex.org/I32021983","display_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","ror":"https://ror.org/04v76ef78","country_code":"DE","type":"education","lineage":["https://openalex.org/I32021983"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mareike Wendorff","raw_affiliation_strings":["Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Clinical Molecular Biology, Christian-Albrechts-University of Kiel, Kiel, Germany","institution_ids":["https://openalex.org/I32021983"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5073345578"],"corresponding_institution_ids":["https://openalex.org/I32021983"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":1763,"currency":"EUR","value_usd":1901},"fwci":0.2962,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.52340743,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"22","issue":"1","first_page":"405","last_page":"405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12012","display_name":"Diatoms and Algae Research","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8211575746536255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7896249294281006},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.7146025896072388},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6211203932762146},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5446507334709167},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5143752694129944},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4602694809436798},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3925321698188782},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3719489872455597},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.31043362617492676}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8211575746536255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7896249294281006},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.7146025896072388},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6211203932762146},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5446507334709167},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5143752694129944},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4602694809436798},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3925321698188782},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3719489872455597},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.31043362617492676}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04315-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04315-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-021-04315-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34404349","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34404349","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d574fffae21e41428bede1cb6f4dcb3f","is_oa":true,"landing_page_url":"https://doaj.org/article/d574fffae21e41428bede1cb6f4dcb3f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-18 (2021)","raw_type":"article"},{"id":"pmh:oai:macau.uni-kiel.de:macau_mods_00002712","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:gbv:8:3-2022-00299-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306402453","display_name":"MACAU: Open Access Repository of Kiel University (University Library Kiel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32021983","host_organization_name":"Christian-Albrechts-Universit\u00e4t zu Kiel","host_organization_lineage":["https://openalex.org/I32021983"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8369717","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8369717","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04315-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04315-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-021-04315-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3620370544","display_name":"EXC 2167: Pr\u00e4zisionsmedizin f\u00fcr Chronische Entz\u00fcndungserkrankungen (PMI)","funder_award_id":"390884018","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3195566912.pdf","grobid_xml":"https://content.openalex.org/works/W3195566912.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W775956452","https://openalex.org/W974578078","https://openalex.org/W1483035379","https://openalex.org/W1572859083","https://openalex.org/W1592870802","https://openalex.org/W1839870100","https://openalex.org/W1981593008","https://openalex.org/W1985437611","https://openalex.org/W2000486917","https://openalex.org/W2011301426","https://openalex.org/W2012034410","https://openalex.org/W2018658742","https://openalex.org/W2028673251","https://openalex.org/W2045160307","https://openalex.org/W2047275456","https://openalex.org/W2065886772","https://openalex.org/W2068016108","https://openalex.org/W2080752012","https://openalex.org/W2082477081","https://openalex.org/W2106779017","https://openalex.org/W2114850508","https://openalex.org/W2130479394","https://openalex.org/W2143558133","https://openalex.org/W2146292423","https://openalex.org/W2147658712","https://openalex.org/W2245493112","https://openalex.org/W2342249984","https://openalex.org/W2472803348","https://openalex.org/W2738925124","https://openalex.org/W2781887390","https://openalex.org/W2806399642","https://openalex.org/W2845591014","https://openalex.org/W2899760200","https://openalex.org/W2905906027","https://openalex.org/W2914371933","https://openalex.org/W2945679805","https://openalex.org/W2977773286","https://openalex.org/W2978880955","https://openalex.org/W2979882137","https://openalex.org/W2980927088","https://openalex.org/W2986041539","https://openalex.org/W2996241254","https://openalex.org/W2998840182","https://openalex.org/W3010737707","https://openalex.org/W3015750191","https://openalex.org/W3036877448","https://openalex.org/W3101787535","https://openalex.org/W3126308011","https://openalex.org/W3136918052","https://openalex.org/W3150635270","https://openalex.org/W3156888771","https://openalex.org/W6982728064"],"related_works":["https://openalex.org/W2549786917","https://openalex.org/W3204758414","https://openalex.org/W3080200277","https://openalex.org/W2557718140","https://openalex.org/W2963339673","https://openalex.org/W67092138","https://openalex.org/W4225687299","https://openalex.org/W2789551765","https://openalex.org/W2113128227","https://openalex.org/W632256878"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,178],"human":[2],"leukocyte":[3],"antigen":[4],"(HLA)":[5],"proteins":[6],"play":[7],"a":[8,26,65,164],"fundamental":[9],"role":[10],"in":[11,51,67,75,139],"the":[12,33,41,48,52,55,84,103,111,118,121,125,128,134,137,155,159,193,197,200,204],"adaptive":[13],"immune":[14],"system":[15],"as":[16],"they":[17],"present":[18,83],"peptides":[19,42,105],"to":[20,123],"T":[21],"cells.":[22],"Mass-spectrometry-based":[23],"immunopeptidomics":[24,79],"is":[25,40,63,88,180],"promising":[27],"and":[28,54,69,77,97,143,166,171,186,199],"powerful":[29],"tool":[30],"for":[31,93,106,154,169],"characterizing":[32],"immunopeptidomic":[34],"landscape":[35],"of":[36,58,110,120,127,136,158,196],"HLA":[37,45],"proteins,":[38],"that":[39,72,150],"presented":[43],"on":[44],"proteins.":[46],"Despite":[47],"growing":[49],"interest":[50],"technology,":[53],"recent":[56],"rise":[57],"immunopeptidomics-specific":[59],"identification":[60],"pipelines,":[61],"there":[62],"still":[64],"gap":[66],"data-analysis":[68],"software":[70,142],"tools":[71,144],"are":[73,207],"specialized":[74],"analyzing":[76,170],"visualizing":[78],"data.":[80],"RESULTS:":[81],"We":[82],"IPTK":[85,162],"library":[86,92,122,138,179,198],"which":[87],"an":[89,107,147],"open-source":[90],"Python-based":[91],"analyzing,":[94],"visualizing,":[95],"comparing,":[96],"integrating":[98,172],"different":[99,114,175],"omics":[100,176],"layers":[101],"with":[102,174,203],"identified":[104,129],"in-depth":[108],"characterization":[109],"immunopeptidome.":[112],"Using":[113],"datasets,":[115],"we":[116,132],"illustrate":[117],"ability":[119],"enrich":[124],"result":[126],"peptidomes.":[130],"Also,":[131],"demonstrate":[133],"utility":[135],"developing":[140,146],"other":[141],"by":[145],"easy-to-use":[148],"dashboard":[149],"can":[151],"be":[152],"used":[153],"interactive":[156],"analysis":[157],"results.":[160],"CONCLUSION:":[161],"provides":[163],"modular":[165],"extendable":[167],"framework":[168],"immunopeptidomes":[173],"layers.":[177],"deployed":[181],"into":[182,187],"PyPI":[183],"at":[184,189,209],"https://pypi.org/project/IPTKL/":[185],"Bioconda":[188],"https://anaconda.org/bioconda/iptkl":[190],",":[191],"while":[192],"source":[194],"code":[195],"dashboard,":[201],"along":[202],"online":[205],"tutorials":[206],"available":[208],"https://github.com/ikmb/iptoolkit":[210],".":[211]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
