{"id":"https://openalex.org/W3178302783","doi":"https://doi.org/10.1186/s12859-021-04279-1","title":"Consensus clustering applied to multi-omics disease subtyping","display_name":"Consensus clustering applied to multi-omics disease subtyping","publication_year":2021,"publication_date":"2021-07-06","ids":{"openalex":"https://openalex.org/W3178302783","doi":"https://doi.org/10.1186/s12859-021-04279-1","mag":"3178302783","pmid":"https://pubmed.ncbi.nlm.nih.gov/34229612"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04279-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04279-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04279-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04279-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008993064","display_name":"Galadriel Bri\u00e8re","orcid":"https://orcid.org/0000-0003-1808-3759"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210138593","display_name":"NutriNeuro","ror":"https://ror.org/04hw9c755","country_code":"FR","type":"facility","lineage":["https://openalex.org/I15057530","https://openalex.org/I4210088668","https://openalex.org/I4210096859","https://openalex.org/I4210138593","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Galadriel Bri\u00e8re","raw_affiliation_strings":["CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France. marie-galadriel.briere@u-bordeaux.fr","INRA, Bordeaux INP, NutriNeuro, UMR 1286, Univ. Bordeaux, 33000, Bordeaux, France. marie-galadriel.briere@u-bordeaux.fr","CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France"],"raw_orcid":"https://orcid.org/0000-0003-1808-3759","affiliations":[{"raw_affiliation_string":"CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France. marie-galadriel.briere@u-bordeaux.fr","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I1294671590","https://openalex.org/I4210160189","https://openalex.org/I4210142254"]},{"raw_affiliation_string":"INRA, Bordeaux INP, NutriNeuro, UMR 1286, Univ. Bordeaux, 33000, Bordeaux, France. marie-galadriel.briere@u-bordeaux.fr","institution_ids":["https://openalex.org/I4210138593","https://openalex.org/I15057530","https://openalex.org/I4210160189"]},{"raw_affiliation_string":"CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I1294671590","https://openalex.org/I4210160189","https://openalex.org/I4210142254"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030851776","display_name":"\u00c9lodie Darbo","orcid":"https://orcid.org/0000-0002-6692-4949"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210134409","display_name":"Institut Bergoni\u00e9","ror":"https://ror.org/02yw1f353","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210134409"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"\u00c9lodie Darbo","raw_affiliation_strings":["CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France","INSERM U1218, Institut Bergoni\u00e9, Univ. Bordeaux, 33076, Bordeaux, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I1294671590","https://openalex.org/I4210160189","https://openalex.org/I4210142254"]},{"raw_affiliation_string":"INSERM U1218, Institut Bergoni\u00e9, Univ. Bordeaux, 33076, Bordeaux, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210134409","https://openalex.org/I15057530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032056143","display_name":"Patricia Th\u00e9bault","orcid":"https://orcid.org/0000-0003-2276-4573"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patricia Th\u00e9bault","raw_affiliation_strings":["CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I1294671590","https://openalex.org/I4210160189","https://openalex.org/I4210142254"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008422748","display_name":"Raluca Uricaru","orcid":"https://orcid.org/0000-0002-5730-6428"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I15057530","display_name":"Universit\u00e9 de Bordeaux","ror":"https://ror.org/057qpr032","country_code":"FR","type":"education","lineage":["https://openalex.org/I15057530"]},{"id":"https://openalex.org/I4210142254","display_name":"Laboratoire Bordelais de Recherche en Informatique","ror":"https://ror.org/03adqg323","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210142254","https://openalex.org/I4210159245","https://openalex.org/I4210160189"]},{"id":"https://openalex.org/I4210160189","display_name":"Institut Polytechnique de Bordeaux","ror":"https://ror.org/054qv7y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210160189"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Raluca Uricaru","raw_affiliation_strings":["CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Bordeaux INP, LaBRI, UMR 5800, Univ. Bordeaux, 33400, Talence, France","institution_ids":["https://openalex.org/I15057530","https://openalex.org/I1294671590","https://openalex.org/I4210160189","https://openalex.org/I4210142254"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5008993064"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I15057530","https://openalex.org/I4210138593","https://openalex.org/I4210142254","https://openalex.org/I4210160189"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1845,"currency":"EUR","value_usd":1989},"fwci":6.5951,"has_fulltext":true,"cited_by_count":105,"citation_normalized_percentile":{"value":0.97903512,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"361","last_page":"361"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.897599995136261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.897599995136261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.010400000028312206,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.7433867454528809},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7182166576385498},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.661686360836029},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5828776359558105},{"id":"https://openalex.org/keywords/consensus-clustering","display_name":"Consensus clustering","score":0.5713536739349365},{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.46011191606521606},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.4464056193828583},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.443593829870224},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3267168700695038},{"id":"https://openalex.org/keywords/fuzzy-clustering","display_name":"Fuzzy clustering","score":0.19793638586997986},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.09384670853614807}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.7433867454528809},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7182166576385498},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.661686360836029},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5828776359558105},{"id":"https://openalex.org/C186767784","wikidata":"https://www.wikidata.org/wiki/Q5162841","display_name":"Consensus clustering","level":5,"score":0.5713536739349365},{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.46011191606521606},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.4464056193828583},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.443593829870224},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3267168700695038},{"id":"https://openalex.org/C17212007","wikidata":"https://www.wikidata.org/wiki/Q5511111","display_name":"Fuzzy clustering","level":3,"score":0.19793638586997986},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.09384670853614807},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032921","descriptor_name":"Consensus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-021-04279-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04279-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04279-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34229612","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34229612","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:oskar-bordeaux.fr:20.500.12278/112809","is_oa":true,"landing_page_url":"https://oskar-bordeaux.fr/handle/20.500.12278/112809","pdf_url":"https://oskar-bordeaux.fr/handle/20.500.12278/112809","source":{"id":"https://openalex.org/S4306402569","display_name":"Oskar-Bordeaux (Universite de Bordeaux)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article de revue"},{"id":"pmh:oai:HAL:inserm-03282498v1","is_oa":true,"landing_page_url":"https://inserm.hal.science/inserm-03282498","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2021, 22 (1), pp.361. &#x27E8;10.1186/s12859-021-04279-1&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:740f6253a4c542d996777314ffecd3b0","is_oa":true,"landing_page_url":"https://doaj.org/article/740f6253a4c542d996777314ffecd3b0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-29 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8259015","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8259015","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04279-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04279-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04279-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G3389333781","display_name":null,"funder_award_id":"INS2I","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"}],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320336508","display_name":"Institut des sciences de l'information et de leurs interactions","ror":"https://ror.org/04z22qz54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3178302783.pdf","grobid_xml":"https://content.openalex.org/works/W3178302783.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1493454437","https://openalex.org/W1548779692","https://openalex.org/W1783384641","https://openalex.org/W1914987135","https://openalex.org/W1967220865","https://openalex.org/W1987219048","https://openalex.org/W2002767255","https://openalex.org/W2006255103","https://openalex.org/W2008929650","https://openalex.org/W2025183726","https://openalex.org/W2030006812","https://openalex.org/W2035618305","https://openalex.org/W2041282815","https://openalex.org/W2065760681","https://openalex.org/W2076426515","https://openalex.org/W2095189226","https://openalex.org/W2095763169","https://openalex.org/W2096283457","https://openalex.org/W2099224600","https://openalex.org/W2103017472","https://openalex.org/W2105709960","https://openalex.org/W2110065044","https://openalex.org/W2124166542","https://openalex.org/W2127048411","https://openalex.org/W2127218421","https://openalex.org/W2128366083","https://openalex.org/W2131681506","https://openalex.org/W2132619562","https://openalex.org/W2139280638","https://openalex.org/W2139967559","https://openalex.org/W2145552137","https://openalex.org/W2148047805","https://openalex.org/W2151936673","https://openalex.org/W2174175128","https://openalex.org/W2185729964","https://openalex.org/W2216103844","https://openalex.org/W2299467264","https://openalex.org/W2464912462","https://openalex.org/W2561345138","https://openalex.org/W2601262142","https://openalex.org/W2613375073","https://openalex.org/W2759978833","https://openalex.org/W2765654979","https://openalex.org/W2776619248","https://openalex.org/W2783685429","https://openalex.org/W2884724578","https://openalex.org/W2935931739","https://openalex.org/W2949127449","https://openalex.org/W2950878899","https://openalex.org/W2969098652","https://openalex.org/W2999729612","https://openalex.org/W3035220044","https://openalex.org/W3099768174","https://openalex.org/W3102641634","https://openalex.org/W4239909670","https://openalex.org/W4250042253"],"related_works":["https://openalex.org/W4254879869","https://openalex.org/W3022576529","https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W2628526247","https://openalex.org/W2596401011","https://openalex.org/W3032826521","https://openalex.org/W2913569734","https://openalex.org/W3135750408","https://openalex.org/W2908738889"],"abstract_inverted_index":{"BACKGROUND:":[0],"Facing":[1],"the":[2,8,24,49,64,104,197,238],"diversity":[3],"of":[4,10,51,67,85,106,113,115,161,181,200],"omics":[5,70],"data":[6,71,130,146,244],"and":[7,30,72,99,120,165,177,237],"difficulty":[9],"selecting":[11],"one":[12],"result":[13],"over":[14],"all":[15],"those":[16],"produced":[17],"by":[18],"several":[19],"methods,":[20],"consensus":[21,42,132,171],"strategies":[22],"have":[23],"potential":[25],"to":[26,31,128,138,158,185,204,211,224],"reconcile":[27],"multiple":[28,69],"inputs":[29],"produce":[32],"robust":[33,157],"results.":[34],"RESULTS:":[35],"Here,":[36],"we":[37,46],"introduce":[38],"ClustOmics,":[39],"a":[40,57,125,175,178,186],"generic":[41],"clustering":[43,76],"tool":[44,80],"that":[45,154],"use":[47],"in":[48,117],"context":[50],"cancer":[52,145,150,243],"subtyping.":[53],"ClustOmics":[54,95,110,137,155,201,230],"relies":[55],"on":[56,142,241,247],"non-relational":[58],"graph":[59],"database,":[60],"which":[61],"allows":[62],"for":[63],"simultaneous":[65],"integration":[66,189],"both":[68,173],"results":[73,239],"from":[74,147,174,214],"various":[75,216],"methods.":[77],"This":[78],"new":[79],"conciliates":[81],"input":[82,118,162],"clusterings,":[83],"regardless":[84],"their":[86,88,90,93,215,226],"origin,":[87],"number,":[89],"size":[91],"or":[92],"shape.":[94],"implements":[96],"an":[97],"intuitive":[98],"flexible":[100],"strategy,":[101],"based":[102],"upon":[103],"idea":[105],"evidence":[107],"accumulation":[108],"clustering.":[109],"computes":[111],"co-occurrences":[112],"pairs":[114],"samples":[116],"clusters":[119],"uses":[121],"this":[122,194],"score":[123],"as":[124],"similarity":[126],"measure":[127],"reorganize":[129],"into":[131,169],"clusters.":[133],"CONCLUSION:":[134],"We":[135,152],"applied":[136],"multi-omics":[139],"disease":[140],"subtyping":[141],"real":[143],"TCGA":[144,242],"ten":[148],"different":[149],"types.":[151],"showed":[153],"is":[156,202,222],"heterogeneous":[159],"qualities":[160],"partitions,":[163],"smoothing":[164],"reconciling":[166],"preliminary":[167],"predictions":[168,217],"high-quality":[170],"clusters,":[172],"computational":[176],"biological":[179],"point":[180],"view.":[182],"The":[183,229],"comparison":[184],"state-of-the-art":[187],"consensus-based":[188],"tool,":[190],"COCA,":[191],"further":[192],"corroborated":[193],"statement.":[195],"However,":[196],"main":[198],"interest":[199],"not":[203],"compete":[205],"with":[206],"other":[207],"tools,":[208],"but":[209],"rather":[210],"make":[212],"profit":[213],"when":[218],"no":[219],"gold-standard":[220],"metric":[221],"available":[223,246],"assess":[225],"significance.":[227],"AVAILABILITY:":[228],"source":[231],"code,":[232],"released":[233],"under":[234],"MIT":[235],"license,":[236],"obtained":[240],"are":[245],"GitHub:":[248],"https://github.com/galadrielbriere/ClustOmics":[249],".":[250]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":43},{"year":2023,"cited_by_count":28},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3}],"updated_date":"2026-06-07T08:38:57.713557","created_date":"2025-10-10T00:00:00"}
