{"id":"https://openalex.org/W3173577645","doi":"https://doi.org/10.1186/s12859-021-04258-6","title":"Complementing sequence-derived features with structural information extracted from fragment libraries for protein structure prediction","display_name":"Complementing sequence-derived features with structural information extracted from fragment libraries for protein structure prediction","publication_year":2021,"publication_date":"2021-06-28","ids":{"openalex":"https://openalex.org/W3173577645","doi":"https://doi.org/10.1186/s12859-021-04258-6","mag":"3173577645","pmid":"https://pubmed.ncbi.nlm.nih.gov/34182922"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04258-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04258-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04258-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04258-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112117783","display_name":"Siyuan Liu","orcid":"https://orcid.org/0009-0009-2138-5740"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210092257","display_name":"China Guangzhou Analysis and Testing Center","ror":"https://ror.org/00d6bjs95","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210092257"]},{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyuan Liu","raw_affiliation_strings":["Guangdong Key Laboratory of Big Data Analysis and Processing, Guangzhou, China","Microsoft Research Asia, Beijing, China","School of Data and Computer Science, Sun Yat-Sen University, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong Key Laboratory of Big Data Analysis and Processing, Guangzhou, China","institution_ids":["https://openalex.org/I4210092257"]},{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China","institution_ids":["https://openalex.org/I4210113369"]},{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100451017","display_name":"Tong Wang","orcid":"https://orcid.org/0000-0002-9483-0050"},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong Wang","raw_affiliation_strings":["Microsoft Research Asia, Beijing, China. watong@microsoft.com","Microsoft Research Asia, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China. watong@microsoft.com","institution_ids":["https://openalex.org/I4210113369"]},{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China","institution_ids":["https://openalex.org/I4210113369"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033194499","display_name":"Qijiang Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qijiang Xu","raw_affiliation_strings":["Microsoft Research Asia, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China","institution_ids":["https://openalex.org/I4210113369"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101518422","display_name":"Bin Shao","orcid":"https://orcid.org/0000-0002-9790-5687"},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Shao","raw_affiliation_strings":["Microsoft Research Asia, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China","institution_ids":["https://openalex.org/I4210113369"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017205177","display_name":"Jian Yin","orcid":"https://orcid.org/0000-0002-1214-5384"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210092257","display_name":"China Guangzhou Analysis and Testing Center","ror":"https://ror.org/00d6bjs95","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210092257"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Yin","raw_affiliation_strings":["Guangdong Key Laboratory of Big Data Analysis and Processing, Guangzhou, China","School of Data and Computer Science, Sun Yat-Sen University, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Guangdong Key Laboratory of Big Data Analysis and Processing, Guangzhou, China","institution_ids":["https://openalex.org/I4210092257"]},{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101884287","display_name":"Tie\u2010Yan Liu","orcid":"https://orcid.org/0000-0002-0476-8020"},"institutions":[{"id":"https://openalex.org/I4210113369","display_name":"Microsoft Research Asia (China)","ror":"https://ror.org/0300m5276","country_code":"CN","type":"company","lineage":["https://openalex.org/I1290206253","https://openalex.org/I4210113369"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tie-Yan Liu","raw_affiliation_strings":["Microsoft Research Asia, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Microsoft Research Asia, Beijing, China","institution_ids":["https://openalex.org/I4210113369"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.074,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.39271369,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"22","issue":"1","first_page":"351","last_page":"351"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.791700005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.791700005531311,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.07980000227689743,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.019600000232458115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.909073531627655},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5419380068778992},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5287655591964722},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5179232954978943},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5019731521606445},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.47364985942840576},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.41839683055877686},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2971603274345398},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24522671103477478},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.23582947254180908},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1325785517692566},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.10061663389205933},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08806642889976501}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.909073531627655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5419380068778992},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5287655591964722},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5179232954978943},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5019731521606445},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.47364985942840576},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.41839683055877686},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2971603274345398},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24522671103477478},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.23582947254180908},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1325785517692566},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.10061663389205933},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08806642889976501},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-021-04258-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04258-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04258-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34182922","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34182922","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8b6dd7d6b7254d8893022d791c36cdd2","is_oa":true,"landing_page_url":"https://doaj.org/article/8b6dd7d6b7254d8893022d791c36cdd2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-18 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8240311","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8240311","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04258-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04258-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04258-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2428490243","display_name":null,"funder_award_id":"U1711262","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2845204914","display_name":null,"funder_award_id":"U1811261","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2937404559","display_name":null,"funder_award_id":"U2001211","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3104142046","display_name":null,"funder_award_id":"2019B15 15130001","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"},{"id":"https://openalex.org/G6840496190","display_name":null,"funder_award_id":"U1811264","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7660082681","display_name":null,"funder_award_id":"U1711261","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8057543385","display_name":null,"funder_award_id":"U1911203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320308943","display_name":"Microsoft Research","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320333993","display_name":"Microsoft Research Asia","ror":"https://ror.org/0300m5276"},{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3173577645.pdf","grobid_xml":"https://content.openalex.org/works/W3173577645.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1548178570","https://openalex.org/W1964655247","https://openalex.org/W2004461664","https://openalex.org/W2014050554","https://openalex.org/W2044145005","https://openalex.org/W2095705004","https://openalex.org/W2109801072","https://openalex.org/W2114115133","https://openalex.org/W2115540209","https://openalex.org/W2138122982","https://openalex.org/W2153153865","https://openalex.org/W2153187042","https://openalex.org/W2154106236","https://openalex.org/W2161151688","https://openalex.org/W2171559274","https://openalex.org/W2176412452","https://openalex.org/W2532298225","https://openalex.org/W2790056550","https://openalex.org/W2905446269","https://openalex.org/W2918929658","https://openalex.org/W2949117887","https://openalex.org/W2967175367","https://openalex.org/W2967606876","https://openalex.org/W2967904513","https://openalex.org/W2968494487","https://openalex.org/W2978928757","https://openalex.org/W2987090428","https://openalex.org/W2995531725","https://openalex.org/W2997234557","https://openalex.org/W2999044305","https://openalex.org/W3048900928","https://openalex.org/W3088621177","https://openalex.org/W3164018573","https://openalex.org/W3198971594","https://openalex.org/W3199799076"],"related_works":["https://openalex.org/W2574528486","https://openalex.org/W2946599741","https://openalex.org/W2593264178","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W2368468053","https://openalex.org/W2058542300","https://openalex.org/W2043066834","https://openalex.org/W1564749278","https://openalex.org/W2294851134"],"abstract_inverted_index":{"BACKGROUND:":[0],"Fragment":[1,97],"libraries":[2,32,76,88,133],"play":[3],"a":[4,20],"key":[5],"role":[6],"in":[7,30],"fragment-assembly":[8],"based":[9,82],"protein":[10,14,52,83,93,103,140],"structure":[11,53,141],"prediction,":[12,54],"where":[13],"fragments":[15],"are":[16],"assembled":[17],"to":[18,111,138],"form":[19],"complete":[21],"three-dimensional":[22],"structure.":[23],"Rich":[24],"and":[25,38,85,105,118],"accurate":[26],"structural":[27,49,60,71,90,128],"information":[28,50,61,72,129],"embedded":[29],"fragment":[31,41,63,75,87,132],"has":[33],"not":[34],"been":[35],"systematically":[36],"extracted":[37,56,130],"used":[39],"beyond":[40],"assembly.":[42],"METHODS:":[43],"To":[44],"better":[45],"leverage":[46],"the":[47,67,100,126],"valuable":[48],"for":[51,80,92],"we":[55],"seven":[57],"types":[58],"of":[59,69,102],"from":[62,131],"libraries.":[64],"We":[65],"broadened":[66],"usage":[68],"such":[70,114],"by":[73],"transforming":[74],"into":[77],"protein-specific":[78],"potentials":[79],"gradient-descent":[81],"folding":[84,104],"encoding":[86],"as":[89,115],"features":[91,137],"property":[94],"prediction.":[95,142],"RESULTS:":[96],"libraires":[98],"improved":[99],"accuracy":[101],"outperformed":[106],"state-of-the-art":[107],"algorithms":[108],"with":[109],"respect":[110],"predicted":[112],"properties,":[113],"torsion":[116],"angles":[117],"inter-residue":[119],"distances.":[120],"CONCLUSION:":[121],"Our":[122],"work":[123],"implies":[124],"that":[125],"rich":[127],"can":[134],"complement":[135],"sequence-derived":[136],"help":[139]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
