{"id":"https://openalex.org/W3164183181","doi":"https://doi.org/10.1186/s12859-021-04191-8","title":"CpGmotifs: a tool to discover DNA motifs associated to CpG methylation events","display_name":"CpGmotifs: a tool to discover DNA motifs associated to CpG methylation events","publication_year":2021,"publication_date":"2021-05-26","ids":{"openalex":"https://openalex.org/W3164183181","doi":"https://doi.org/10.1186/s12859-021-04191-8","mag":"3164183181","pmid":"https://pubmed.ncbi.nlm.nih.gov/34039269"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04191-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04191-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04191-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04191-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089211537","display_name":"Giovanni Scala","orcid":"https://orcid.org/0000-0002-9037-1782"},"institutions":[{"id":"https://openalex.org/I71267560","display_name":"University of Naples Federico II","ror":"https://ror.org/05290cv24","country_code":"IT","type":"education","lineage":["https://openalex.org/I71267560"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Scala","raw_affiliation_strings":["Department of Biology, University of Naples \"Federico II\", 80126, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Naples \"Federico II\", 80126, Naples, Italy","institution_ids":["https://openalex.org/I71267560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101807666","display_name":"Antonio Federico","orcid":"https://orcid.org/0000-0003-2554-9879"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Antonio Federico","raw_affiliation_strings":["Faculty of Medicine and Health Technology, Tampere University, 33014, Tampere, Finland","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere University, 33014, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, 33014, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere University, 33014, Tampere, Finland","institution_ids":["https://openalex.org/I150589677","https://openalex.org/I4210133110"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028682033","display_name":"Dario Greco","orcid":"https://orcid.org/0000-0001-9195-9003"},"institutions":[{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I2800229700","display_name":"Helsinki Institute of Physics","ror":"https://ror.org/01x2x1522","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I2800229700","https://openalex.org/I63548447","https://openalex.org/I94722563","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Dario Greco","raw_affiliation_strings":["Faculty of Medicine and Health Technology, Tampere University, 33014, Tampere, Finland. dario.greco@tuni.fi","Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere University, 33014, Tampere, Finland. dario.greco@tuni.fi","Institute of Biotechnology, University of Helsinki, 00014, Helsinki, Finland. dario.greco@tuni.fi","Faculty of Medicine and Health Technology, Tampere University, 33014, Tampere, Finland"],"raw_orcid":"https://orcid.org/0000-0001-9195-9003","affiliations":[{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, 33014, Tampere, Finland. dario.greco@tuni.fi","institution_ids":["https://openalex.org/I150589677","https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Tampere University, 33014, Tampere, Finland. dario.greco@tuni.fi","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, 00014, Helsinki, Finland. dario.greco@tuni.fi","institution_ids":["https://openalex.org/I2800229700"]},{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, 33014, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5028682033"],"corresponding_institution_ids":["https://openalex.org/I150589677","https://openalex.org/I166825849","https://openalex.org/I2800229700","https://openalex.org/I4210133110"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":1521,"currency":"EUR","value_usd":1640},"fwci":0.1481,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.43958042,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"22","issue":"1","first_page":"278","last_page":"278"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.7046999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.7046999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.1673000007867813,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.04529999941587448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.8427638411521912},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6763685941696167},{"id":"https://openalex.org/keywords/cpg-site","display_name":"CpG site","score":0.6672061085700989},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6642006635665894},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.5615959167480469},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.550022304058075},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5050457119941711},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.47353097796440125},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.43569400906562805},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.42269501090049744},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4121342897415161},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2528831958770752},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1925494372844696},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09163263440132141},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0849694013595581}],"concepts":[{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.8427638411521912},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6763685941696167},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.6672061085700989},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6642006635665894},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.5615959167480469},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.550022304058075},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5050457119941711},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.47353097796440125},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43569400906562805},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.42269501090049744},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4121342897415161},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2528831958770752},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1925494372844696},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09163263440132141},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0849694013595581}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018899","descriptor_name":"CpG Islands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-021-04191-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04191-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04191-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34039269","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34039269","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:helda.helsinki.fi:10138/332508","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/332508","pdf_url":"http://hdl.handle.net/10138/332508","source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:55d38b9e0843432eb532abe5456a98c9","is_oa":true,"landing_page_url":"https://doaj.org/article/55d38b9e0843432eb532abe5456a98c9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-10 (2021)","raw_type":"article"},{"id":"pmh:oai:helda.helsinki.fi:10138/330374","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/330374","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/eprint/type/JournalArticle"},{"id":"pmh:oai:pubmedcentral.nih.gov:8157658","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8157658","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/219648","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/219648","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04191-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04191-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04191-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6700000166893005,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G4869243700","display_name":null,"funder_award_id":"821511","funder_id":"https://openalex.org/F4320326631","funder_display_name":"Innovative Medicines Initiative"}],"funders":[{"id":"https://openalex.org/F4320326631","display_name":"Innovative Medicines Initiative","ror":"https://ror.org/019af4n30"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164183181.pdf","grobid_xml":"https://content.openalex.org/works/W3164183181.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1821654469","https://openalex.org/W1971684179","https://openalex.org/W1984589574","https://openalex.org/W1999785461","https://openalex.org/W2011988545","https://openalex.org/W2016497346","https://openalex.org/W2017443733","https://openalex.org/W2028130619","https://openalex.org/W2097175728","https://openalex.org/W2103777723","https://openalex.org/W2117446594","https://openalex.org/W2125154191","https://openalex.org/W2126263355","https://openalex.org/W2137111266","https://openalex.org/W2149349277","https://openalex.org/W2166903146","https://openalex.org/W2754050895","https://openalex.org/W2770178180","https://openalex.org/W2885277278","https://openalex.org/W2955023201","https://openalex.org/W3003282218","https://openalex.org/W3049318524","https://openalex.org/W3103285574","https://openalex.org/W4230397979","https://openalex.org/W4289838143"],"related_works":["https://openalex.org/W2169344098","https://openalex.org/W2944524138","https://openalex.org/W2364944693","https://openalex.org/W2123238153","https://openalex.org/W2582088144","https://openalex.org/W4200236841","https://openalex.org/W3029570287","https://openalex.org/W2380976670","https://openalex.org/W4210559607","https://openalex.org/W2381482069"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"investigation":[2],"of":[3,12,29,35,53,87,156],"molecular":[4],"alterations":[5],"associated":[6],"with":[7],"the":[8,21,26,32,36,49,68,72,85,147,153,168],"conservation":[9],"and":[10,51,138,186],"variation":[11],"DNA":[13,33,91,96,110,140],"methylation":[14,30,54,97,123,145,158],"in":[15,20,48,62,71,75,113,146],"eukaryotes":[16],"is":[17,173,181,191],"gaining":[18],"interest":[19],"biomedical":[22],"research":[23],"community.":[24],"Among":[25],"different":[27],"determinants":[28],"stability,":[31],"composition":[34,70],"CpG":[37,122,144],"surrounding":[38],"regions":[39],"has":[40,58],"been":[41,59],"shown":[42],"to":[43,84,94,115,120,135,143],"have":[44],"a":[45,63,80,103,130,187],"crucial":[46],"role":[47],"maintenance":[50],"establishment":[52],"statuses.":[55],"This":[56],"aspect":[57],"previously":[60],"characterized":[61],"quantitative":[64],"manner":[65],"by":[66,160],"inspecting":[67],"nucleotidic":[69],"region.":[73],"Research":[74],"this":[76],"field":[77],"still":[78],"lacks":[79],"qualitative":[81],"perspective,":[82],"linked":[83],"identification":[86],"certain":[88],"sequences":[89],"(or":[90],"motifs)":[92],"related":[93,119,142],"particular":[95],"phenomena.":[98],"RESULTS:":[99],"Here":[100],"we":[101],"present":[102],"novel":[104],"computational":[105],"strategy":[106],"based":[107],"on":[108,183,193],"short":[109],"motif":[111],"discovery":[112],"order":[114],"characterize":[116,139],"sequence":[117],"patterns":[118,141],"aberrant":[121],"events.":[124],"We":[125],"provide":[126],"our":[127],"framework":[128],"as":[129],"user-friendly,":[131],"shiny-based":[132],"application,":[133],"CpGmotifs,":[134],"easily":[136],"retrieve":[137],"human":[148],"genome.":[149],"Our":[150],"tool":[151],"supports":[152],"functional":[154],"interpretation":[155],"deregulated":[157],"events":[159],"predicting":[161],"transcription":[162],"factors":[163],"binding":[164],"sites":[165],"(TFBS)":[166],"encompassing":[167],"identified":[169],"motifs.":[170],"CONCLUSIONS:":[171],"CpGmotifs":[172],"an":[174],"open":[175],"source":[176,179],"software.":[177],"Its":[178],"code":[180],"available":[182],"GitHub":[184],"https://github.com/Greco-Lab/CpGmotifs":[185],"ready-to-use":[188],"docker":[189],"image":[190],"provided":[192],"DockerHub":[194],"at":[195],"https://hub.docker.com/r/grecolab/cpgmotifs":[196],".":[197]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
