{"id":"https://openalex.org/W3163745143","doi":"https://doi.org/10.1186/s12859-021-04172-x","title":"IPD 2.0: To derive insights from an evolving SARS-CoV-2 genome","display_name":"IPD 2.0: To derive insights from an evolving SARS-CoV-2 genome","publication_year":2021,"publication_date":"2021-05-13","ids":{"openalex":"https://openalex.org/W3163745143","doi":"https://doi.org/10.1186/s12859-021-04172-x","mag":"3163745143","pmid":"https://pubmed.ncbi.nlm.nih.gov/33985433"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04172-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04172-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04172-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04172-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030864351","display_name":"Sanket Desai","orcid":"https://orcid.org/0000-0002-7929-8684"},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I2800098698","display_name":"Tata Memorial Hospital","ror":"https://ror.org/010842375","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sanket Desai","raw_affiliation_strings":["Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India","institution_ids":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049239212","display_name":"Aishwarya Rane","orcid":null},"institutions":[{"id":"https://openalex.org/I2800098698","display_name":"Tata Memorial Hospital","ror":"https://ror.org/010842375","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Aishwarya Rane","raw_affiliation_strings":["Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India","institution_ids":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109380966","display_name":"Asim Joshi","orcid":null},"institutions":[{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I2800098698","display_name":"Tata Memorial Hospital","ror":"https://ror.org/010842375","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Asim Joshi","raw_affiliation_strings":["Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India","institution_ids":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086783488","display_name":"Amit Dutt","orcid":"https://orcid.org/0000-0002-1119-4774"},"institutions":[{"id":"https://openalex.org/I1284637955","display_name":"Kerala State Council for Science, Technology and Environment","ror":"https://ror.org/030fy4q75","country_code":"IN","type":"government","lineage":["https://openalex.org/I1284637955"]},{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]},{"id":"https://openalex.org/I2800731441","display_name":"Government of Kerala","ror":"https://ror.org/00r96e843","country_code":"IN","type":"government","lineage":["https://openalex.org/I2800731441"]},{"id":"https://openalex.org/I4210157422","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88","country_code":"IN","type":"healthcare","lineage":["https://openalex.org/I2800098698","https://openalex.org/I4210157422"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Amit Dutt","raw_affiliation_strings":["Adjunct Faculty, Institute of Advanced Virology, Kerala State Council for Science, Technology and Environment, Govt. of Kerala, Thonnakkal, Kerala, 695317, India. adutt@actrec.gov.in","Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India. adutt@actrec.gov.in","Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India. adutt@actrec.gov.in","Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India"],"raw_orcid":"https://orcid.org/0000-0002-1119-4774","affiliations":[{"raw_affiliation_string":"Adjunct Faculty, Institute of Advanced Virology, Kerala State Council for Science, Technology and Environment, Govt. of Kerala, Thonnakkal, Kerala, 695317, India. adutt@actrec.gov.in","institution_ids":["https://openalex.org/I1284637955","https://openalex.org/I2800731441"]},{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India. adutt@actrec.gov.in","institution_ids":["https://openalex.org/I200207707"]},{"raw_affiliation_string":"Integrated Cancer Genomics Laboratory, Advanced Centre for Treatment, Research, and Education in Cancer, Tata Memorial Centre, Kharghar, Navi Mumbai, Maharashtra, 410210, India. adutt@actrec.gov.in","institution_ids":["https://openalex.org/I4210157422"]},{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai, Maharashtra, 400094, India","institution_ids":["https://openalex.org/I200207707"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086783488"],"corresponding_institution_ids":["https://openalex.org/I1284637955","https://openalex.org/I200207707","https://openalex.org/I2800731441","https://openalex.org/I4210157422"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4318,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.63676516,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"22","issue":"1","first_page":"247","last_page":"247"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.887499988079071,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.887499988079071,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10041","display_name":"COVID-19 Clinical Research Studies","score":0.01759999990463257,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.011599999852478504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6504580974578857},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.6005619764328003},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5420937538146973},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5351921319961548},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4743203818798065},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.46498817205429077},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4434959292411804},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.41651827096939087},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4024432599544525},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.28113991022109985},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23259109258651733},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0967508852481842}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6504580974578857},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.6005619764328003},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5420937538146973},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5351921319961548},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4743203818798065},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.46498817205429077},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4434959292411804},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.41651827096939087},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4024432599544525},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.28113991022109985},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23259109258651733},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0967508852481842},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001938","descriptor_name":"Brazil","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001938","descriptor_name":"Brazil","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001938","descriptor_name":"Brazil","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001938","descriptor_name":"Brazil","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-021-04172-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04172-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04172-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33985433","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33985433","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8118100","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8118100","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d580fb5252d14c059640772df91a6d46","is_oa":true,"landing_page_url":"https://doaj.org/article/d580fb5252d14c059640772df91a6d46","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-9 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04172-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04172-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04172-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335498","display_name":"Tata Memorial Centre","ror":"https://ror.org/010842375"},{"id":"https://openalex.org/F4320338100","display_name":"Advanced Centre for Treatment, Research and Education in Cancer","ror":"https://ror.org/05b9pgt88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3163745143.pdf","grobid_xml":"https://content.openalex.org/works/W3163745143.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W2076793571","https://openalex.org/W2135653026","https://openalex.org/W2142386149","https://openalex.org/W2296948836","https://openalex.org/W2558624268","https://openalex.org/W2605343262","https://openalex.org/W2952045272","https://openalex.org/W2997096971","https://openalex.org/W3020188044","https://openalex.org/W3043124965","https://openalex.org/W3048056153","https://openalex.org/W3081824621","https://openalex.org/W3118443299","https://openalex.org/W3118776326","https://openalex.org/W3121733384","https://openalex.org/W3182031242"],"related_works":["https://openalex.org/W2156564520","https://openalex.org/W4307843054","https://openalex.org/W2104570606","https://openalex.org/W4210430020","https://openalex.org/W4248160505","https://openalex.org/W4393697786","https://openalex.org/W4393720305","https://openalex.org/W4394027046","https://openalex.org/W2112118427","https://openalex.org/W4205247356"],"abstract_inverted_index":{"BACKGROUND:":[0],"Rapid":[1],"analysis":[2,49,64],"of":[3,15,20,46,51,71,86,99,111,123,131,172,176,192],"SARS-CoV-2":[4,32,48,93,115,137,174],"genomic":[5,63,190,205],"data":[6,34,148],"plays":[7],"a":[8,92,109,160,181,198,208],"crucial":[9],"role":[10],"in":[11,17,134,140,207,214],"surveillance":[12,206],"and":[13,24,69,80,145,147,154,163,169,188,195,224],"adoption":[14],"measures":[16],"controlling":[18],"spread":[19],"Covid-19.":[21],"Fast,":[22],"inclusive":[23],"adaptive":[25,164],"methods":[26],"are":[27],"required":[28],"for":[29],"the":[30,47,67,72,76,82,100,135,141,173,186,193,225],"heterogenous":[31],"sequence":[33],"generated":[35],"at":[36,229],"an":[37,43,120],"unprecedented":[38],"rate.":[39],"RESULTS:":[40],"We":[41],"present":[42],"updated":[44],"version":[45],"module":[50,175],"our":[52],"automated":[53],"computational":[54],"pipeline,":[55],"Infectious":[56],"Pathogen":[57],"Detector":[58],"(IPD)":[59],"2.0,":[60],"to":[61,65,184,201,210],"perform":[62],"understand":[66],"variability":[68],"dynamics":[70],"virus.":[73],"It":[74],"adopts":[75],"recent":[77],"clade":[78,83],"nomenclature":[79],"demonstrates":[81],"prediction":[84],"accuracy":[85],"92.8%.":[87],"IPD":[88,177,217],"2.0":[89,178,218],"also":[90],"contains":[91],"updater":[94],"module,":[95],"allowing":[96],"automatic":[97],"upgrading":[98],"variant":[101],"database":[102,122],"using":[103],"genome":[104,116],"sequences":[105],"from":[106,150,222],"GISAID.":[107],"As":[108],"proof":[110],"principle,":[112],"analyzing":[113],"208,911":[114],"sequences,":[117],"we":[118],"generate":[119],"extensive":[121],"2.58":[124],"million":[125],"sample-wise":[126],"variants.":[127],"A":[128,167],"comparative":[129],"account":[130],"lineage-specific":[132],"mutations":[133,158],"newer":[136],"strains":[138,191],"emerging":[139],"UK,":[142],"South":[143],"Africa":[144],"Brazil":[146],"reported":[149],"India":[151],"identify":[152,211],"overlapping":[153],"lineages":[155],"specific":[156],"acquired":[157],"suggesting":[159],"repetitive":[161],"convergent":[162],"evolution.":[165],"CONCLUSIONS:":[166],"novel":[168],"dynamic":[170],"feature":[171],"makes":[179],"it":[180],"contemporary":[182],"tool":[183,200],"analyze":[185],"diverse":[187],"growing":[189],"virus":[194],"serve":[196],"as":[197],"vital":[199],"help":[202],"facilitate":[203],"rapid":[204],"population":[209],"variants":[212],"involved":[213],"breakthrough":[215],"infections.":[216],"is":[219,227],"freely":[220],"available":[221,228],"http://www.actrec.gov.in/pi-webpages/AmitDutt/IPD/IPD.html":[223],"web-application":[226],"http://ipd.actrec.gov.in/ipdweb/":[230],".":[231]},"counts_by_year":[{"year":2024,"cited_by_count":6},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
