{"id":"https://openalex.org/W3160687760","doi":"https://doi.org/10.1186/s12859-021-04156-x","title":"Combining genetic algorithm with machine learning strategies for designing potent antimicrobial peptides","display_name":"Combining genetic algorithm with machine learning strategies for designing potent antimicrobial peptides","publication_year":2021,"publication_date":"2021-05-11","ids":{"openalex":"https://openalex.org/W3160687760","doi":"https://doi.org/10.1186/s12859-021-04156-x","mag":"3160687760","pmid":"https://pubmed.ncbi.nlm.nih.gov/33975547"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04156-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04156-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04156-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04156-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024756311","display_name":"Kyle Boone","orcid":"https://orcid.org/0000-0001-6383-6479"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Boone","raw_affiliation_strings":["Bioengineering Program, University of Kansas, Institute of Bioengineering Research, University of Kansas, 1530 W 15th Street, Learned Hall, Room 5109, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Program, University of Kansas, Institute of Bioengineering Research, University of Kansas, 1530 W 15th Street, Learned Hall, Room 5109, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008037540","display_name":"Cate Wisdom","orcid":"https://orcid.org/0000-0002-4361-7161"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cate Wisdom","raw_affiliation_strings":["Bioengineering Program, University of Kansas, Institute of Bioengineering Research, University of Kansas, 1530 W 15th Street, Learned Hall, Room 5109, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Program, University of Kansas, Institute of Bioengineering Research, University of Kansas, 1530 W 15th Street, Learned Hall, Room 5109, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066191241","display_name":"Kyle V. Camarda","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Camarda","raw_affiliation_strings":["Chemical and Petroleum Engineering Department, University of Kansas, 1530 West 15th Street, Learned Hall, Room 4154, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical and Petroleum Engineering Department, University of Kansas, 1530 West 15th Street, Learned Hall, Room 4154, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044702300","display_name":"Paulette Spencer","orcid":"https://orcid.org/0000-0003-1447-826X"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paulette Spencer","raw_affiliation_strings":["Institute of Bioengineering Research, University of Kansas, 1530 West 15th Street, Learned Hall, Room 3111, Lawrence, KS, 66045, USA","Mechanical Engineering Department, University of Kansas, 1530 West 15th Street, Learned Hall, Room 3111, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioengineering Research, University of Kansas, 1530 West 15th Street, Learned Hall, Room 3111, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Mechanical Engineering Department, University of Kansas, 1530 West 15th Street, Learned Hall, Room 3111, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065968105","display_name":"Candan Tamerler","orcid":"https://orcid.org/0000-0002-1960-2218"},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Candan Tamerler","raw_affiliation_strings":["Institute of Bioengineering Research, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA. ctamerler@ku.edu","Mechanical Engineering Department, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA. ctamerler@ku.edu","Mechanical Engineering Department, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA"],"raw_orcid":"https://orcid.org/0000-0002-1960-2218","affiliations":[{"raw_affiliation_string":"Institute of Bioengineering Research, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA. ctamerler@ku.edu","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Mechanical Engineering Department, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA. ctamerler@ku.edu","institution_ids":["https://openalex.org/I146416000"]},{"raw_affiliation_string":"Mechanical Engineering Department, University of Kansas, 1530 W 15th St, Learned Hall, Room 3135A, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5065968105"],"corresponding_institution_ids":["https://openalex.org/I146416000"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.3608,"has_fulltext":true,"cited_by_count":82,"citation_normalized_percentile":{"value":0.98247797,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"239","last_page":"239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7595129013061523},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7059319019317627},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.618756115436554},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.591655969619751},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.43918871879577637},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25240010023117065},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.19064116477966309},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1191723644733429}],"concepts":[{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7595129013061523},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7059319019317627},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.618756115436554},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.591655969619751},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.43918871879577637},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25240010023117065},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.19064116477966309},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1191723644733429},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023181","descriptor_name":"Antimicrobial Cationic Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D052899","descriptor_name":"Pore Forming Cytotoxic Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052899","descriptor_name":"Pore Forming Cytotoxic Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D052899","descriptor_name":"Pore Forming Cytotoxic Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04156-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04156-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04156-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33975547","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33975547","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bbc2a161e49044b7b77b373c9f05dd4d","is_oa":true,"landing_page_url":"https://doaj.org/article/bbc2a161e49044b7b77b373c9f05dd4d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-17 (2021)","raw_type":"article"},{"id":"pmh:oai:kuscholarworks.ku.edu:1808/32341","is_oa":true,"landing_page_url":"http://hdl.handle.net/1808/32341","pdf_url":null,"source":{"id":"https://openalex.org/S4377196285","display_name":"KU ScholarWorks (University of Kansas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I146416000","host_organization_name":"University of Kansas","host_organization_lineage":["https://openalex.org/I146416000"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8111958","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8111958","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04156-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04156-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04156-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G2690760647","display_name":null,"funder_award_id":"R01DE025476","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6481838377","display_name":null,"funder_award_id":"R01DE025476","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G6651703470","display_name":null,"funder_award_id":"R01 DE025476","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3160687760.pdf","grobid_xml":"https://content.openalex.org/works/W3160687760.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W149611134","https://openalex.org/W1485009520","https://openalex.org/W1486212524","https://openalex.org/W1834627138","https://openalex.org/W1911869269","https://openalex.org/W1914617498","https://openalex.org/W1964667833","https://openalex.org/W1973760988","https://openalex.org/W1985907120","https://openalex.org/W1991028942","https://openalex.org/W1998064689","https://openalex.org/W2003229787","https://openalex.org/W2019661401","https://openalex.org/W2034998024","https://openalex.org/W2042204882","https://openalex.org/W2043338013","https://openalex.org/W2050456292","https://openalex.org/W2055214702","https://openalex.org/W2060634415","https://openalex.org/W2060658249","https://openalex.org/W2066275795","https://openalex.org/W2066352661","https://openalex.org/W2074970710","https://openalex.org/W2074988297","https://openalex.org/W2092643722","https://openalex.org/W2097099115","https://openalex.org/W2106648157","https://openalex.org/W2116744776","https://openalex.org/W2133425057","https://openalex.org/W2135409993","https://openalex.org/W2141497756","https://openalex.org/W2160364864","https://openalex.org/W2175270296","https://openalex.org/W2179036997","https://openalex.org/W2200755474","https://openalex.org/W2216408579","https://openalex.org/W2252622713","https://openalex.org/W2278373797","https://openalex.org/W2279510465","https://openalex.org/W2339719866","https://openalex.org/W2464864096","https://openalex.org/W2501964761","https://openalex.org/W2508570029","https://openalex.org/W2514829374","https://openalex.org/W2521491383","https://openalex.org/W2525580669","https://openalex.org/W2529817164","https://openalex.org/W2549976854","https://openalex.org/W2556828189","https://openalex.org/W2556869241","https://openalex.org/W2558715379","https://openalex.org/W2567713795","https://openalex.org/W2751801069","https://openalex.org/W2766447205","https://openalex.org/W2769835804","https://openalex.org/W2784920021","https://openalex.org/W2786810290","https://openalex.org/W2791848964","https://openalex.org/W2801926310","https://openalex.org/W2809283005","https://openalex.org/W2896559551","https://openalex.org/W2902090272","https://openalex.org/W2911755506","https://openalex.org/W2920054351","https://openalex.org/W2936188727","https://openalex.org/W2949867299","https://openalex.org/W2967606876","https://openalex.org/W2971868294","https://openalex.org/W2976230242","https://openalex.org/W2976792796","https://openalex.org/W2979544394","https://openalex.org/W2981285269","https://openalex.org/W2997511682","https://openalex.org/W3002606204","https://openalex.org/W3005184863","https://openalex.org/W3081324398","https://openalex.org/W3095516928"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"BACKGROUND:":[0],"Current":[1],"methods":[2,22,118,328],"in":[3,28,73,134,156,228,244],"machine":[4,127,157,206,251,262],"learning":[5,17,158,207,223,252,263],"provide":[6],"approaches":[7,124,183],"for":[8,40,116,180,209,280,289,331],"solving":[9],"challenging,":[10],"multiple":[11,68],"constraint":[12],"design":[13,61,92,123,137,191,301],"problems.":[14],"While":[15,129],"deep":[16],"and":[18,82,174,250,264,308],"related":[19,170],"neural":[20],"networking":[21],"have":[23,51],"state-of-the-art":[24],"performance,":[25],"their":[26,41,99],"vulnerability":[27],"decision":[29],"making":[30],"processes":[31],"leading":[32],"to":[33,94,139,232,238,253,268,305],"irrational":[34],"outcomes":[35],"is":[36,113,315,329],"a":[37,89,107,145,186,204,247,265,270,276],"major":[38],"concern":[39],"implementation.":[42],"With":[43],"the":[44,67,103,136,161,175,190,217,256,316],"rising":[45],"antibiotic":[46],"resistance,":[47],"antimicrobial":[48,96,211],"peptides":[49,64,212,237],"(AMPs)":[50],"increasingly":[52],"gained":[53],"attention":[54],"as":[55],"novel":[56],"therapeutic":[57],"agents.":[58],"This":[59,111],"challenging":[60],"problem":[62],"requires":[63,102],"which":[65],"meet":[66],"constraints":[69],"of":[70,126,154,163,166,177,189,219,236,241,293],"limiting":[71],"drug-resistance":[72],"bacteria,":[74],"preventing":[75],"secondary":[76],"infections":[77],"from":[78,106],"imbalanced":[79],"microbial":[80],"flora,":[81],"avoiding":[83],"immune":[84],"system":[85,226],"suppression.":[86],"AMPs":[87,168,220],"offer":[88],"promising,":[90],"bioinspired":[91],"space":[93,112,138],"targeting":[95],"activity,":[97,144],"but":[98],"versatility":[100],"also":[101],"curated":[104],"selection":[105,243],"combinatorial":[108],"sequence":[109,242],"space.":[110,192],"too":[114],"large":[115],"brute-force":[117],"or":[119],"currently":[120],"known":[121],"rational":[122,182],"outside":[125],"learning.":[128],"there":[130],"has":[131,149,159,184],"been":[132,150],"progress":[133],"using":[135,221],"more":[140],"effectively":[141],"target":[142],"AMP":[143,300],"widely":[146],"applicable":[147],"approach":[148],"elusive.":[151],"The":[152],"lack":[153,176],"transparency":[155],"limited":[160,185],"advancement":[162],"scientific":[164],"knowledge":[165],"how":[167],"are":[169],"among":[171],"each":[172],"other,":[173],"general":[178],"applicability":[179],"fully":[181],"broader":[187],"understanding":[188],"METHODS:":[193],"Here":[194],"we":[195],"combined":[196,323],"an":[197,284,290],"evolutionary":[198],"method":[199,215],"with":[200,246,283,324],"rough":[201,325],"set":[202,326],"theory,":[203],"transparent":[205],"approach,":[208],"designing":[210],"(AMPs).":[213],"Our":[214,225,296],"achieves":[216],"customization":[218],"supervised":[222,261],"boundaries.":[224],"employs":[227],"vitro":[229],"bacterial":[230,278],"assays":[231],"measure":[233],"fitness,":[234],"codon-representation":[235],"gain":[239],"flexibility":[240],"DNA-space":[245],"genetic":[248,266,321],"algorithm":[249,267],"further":[254],"accelerate":[255],"process.":[257],"RESULTS:":[258],"We":[259],"use":[260],"find":[269],"peptide":[271,335],"active":[272],"against":[273],"S.":[274],"epidermidis,":[275],"common":[277],"strain":[279],"implant":[281],"infections,":[282],"improved":[285,291],"aggregation":[286],"propensity":[287],"average":[288],"ease":[292],"synthesis.":[294],"CONCLUSIONS:":[295],"results":[297],"demonstrate":[298],"that":[299],"can":[302],"be":[303],"customized":[304],"maintain":[306],"activity":[307],"simplify":[309],"production.":[310],"To":[311],"our":[312],"knowledge,":[313],"this":[314],"first":[317],"time":[318],"when":[319],"codon-based":[320],"algorithms":[322],"theory":[327],"used":[330],"computational":[332],"search":[333],"on":[334],"sequences.":[336]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":20},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":4}],"updated_date":"2026-07-11T18:08:03.149640","created_date":"2025-10-10T00:00:00"}
