{"id":"https://openalex.org/W3138492685","doi":"https://doi.org/10.1186/s12859-021-04087-7","title":"Clustering based approach for population level identification of condition-associated T-cell receptor \u03b2-chain CDR3 sequences","display_name":"Clustering based approach for population level identification of condition-associated T-cell receptor \u03b2-chain CDR3 sequences","publication_year":2021,"publication_date":"2021-03-25","ids":{"openalex":"https://openalex.org/W3138492685","doi":"https://doi.org/10.1186/s12859-021-04087-7","mag":"3138492685","pmid":"https://pubmed.ncbi.nlm.nih.gov/33765908"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04087-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04087-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04087-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04087-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087505957","display_name":"Dawit A. Yohannes","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Dawit A. Yohannes","raw_affiliation_strings":["Department of Medical and Clinical Genetics, University of Helsinki, Helsinki, Finland","Research Programs Unit, Translational Immunology, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Clinical Genetics, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Research Programs Unit, Translational Immunology, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003543575","display_name":"Katri Kaukinen","orcid":"https://orcid.org/0000-0002-5046-8133"},"institutions":[{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Katri Kaukinen","raw_affiliation_strings":["Department of Internal Medicine, Faculty of Medicine and Health Technology, Tampere University Hospital, Tampere University, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine, Faculty of Medicine and Health Technology, Tampere University Hospital, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I4210126318","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057450485","display_name":"Kalle Kurppa","orcid":"https://orcid.org/0000-0003-4757-2164"},"institutions":[{"id":"https://openalex.org/I4210126318","display_name":"Tampere University Hospital","ror":"https://ror.org/02hvt5f17","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210126318"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Kalle Kurppa","raw_affiliation_strings":["Department of Pediatrics, Tampere University Hospital and Center for Child Health Research, Tampere University, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Tampere University Hospital and Center for Child Health Research, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I4210126318","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037027394","display_name":"P\u00e4ivi Saavalainen","orcid":"https://orcid.org/0000-0002-1399-1689"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"P\u00e4ivi Saavalainen","raw_affiliation_strings":["Department of Medical and Clinical Genetics, University of Helsinki, Helsinki, Finland","Research Programs Unit, Translational Immunology, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical and Clinical Genetics, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Research Programs Unit, Translational Immunology, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028682033","display_name":"Dario Greco","orcid":"https://orcid.org/0000-0001-9195-9003"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I150589677","display_name":"Tampere University of Applied Sciences","ror":"https://ror.org/00bwtjf83","country_code":"FI","type":"education","lineage":["https://openalex.org/I150589677"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I2800229700","display_name":"Helsinki Institute of Physics","ror":"https://ror.org/01x2x1522","country_code":"FI","type":"facility","lineage":["https://openalex.org/I133731052","https://openalex.org/I2800229700","https://openalex.org/I63548447","https://openalex.org/I94722563","https://openalex.org/I9927081"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Dario Greco","raw_affiliation_strings":["BioMediTech Institute, Tampere University, Tampere, Finland. dario.greco@tuni.fi","Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland. dario.greco@tuni.fi","Institute of Biotechnology, University of Helsinki, Helsinki, Finland. dario.greco@tuni.fi","BioMediTech Institute, Tampere University, Tampere, Finland","Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","Institute of Biotechnology, University of Helsinki, Helsinki, Finland"],"raw_orcid":"https://orcid.org/0000-0001-9195-9003","affiliations":[{"raw_affiliation_string":"BioMediTech Institute, Tampere University, Tampere, Finland. dario.greco@tuni.fi","institution_ids":["https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland. dario.greco@tuni.fi","institution_ids":["https://openalex.org/I150589677","https://openalex.org/I4210133110"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, Finland. dario.greco@tuni.fi","institution_ids":["https://openalex.org/I2800229700"]},{"raw_affiliation_string":"BioMediTech Institute, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]},{"raw_affiliation_string":"Institute of Biotechnology, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5028682033"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I150589677","https://openalex.org/I166825849","https://openalex.org/I2800229700","https://openalex.org/I4210133110"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":1576,"currency":"EUR","value_usd":1699},"fwci":1.5333,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.82283567,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"22","issue":"1","first_page":"159","last_page":"159"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11348","display_name":"Celiac Disease Research and Management","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11348","display_name":"Celiac Disease Research and Management","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/t-cell-receptor","display_name":"T-cell receptor","score":0.7260027527809143},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6998729705810547},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5792151689529419},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5627590417861938},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5433995127677917},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.4894806146621704},{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.46602579951286316},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.42264634370803833},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.3771750032901764},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3233519196510315}],"concepts":[{"id":"https://openalex.org/C19317047","wikidata":"https://www.wikidata.org/wiki/Q412037","display_name":"T-cell receptor","level":4,"score":0.7260027527809143},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6998729705810547},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5792151689529419},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5627590417861938},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5433995127677917},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.4894806146621704},{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.46602579951286316},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.42264634370803833},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.3771750032901764},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3233519196510315},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011948","descriptor_name":"Receptors, Antigen, T-Cell","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016693","descriptor_name":"Receptors, Antigen, T-Cell, alpha-beta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-021-04087-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04087-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04087-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33765908","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33765908","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8e7f150415f54117beec7e3a01ff5c82","is_oa":true,"landing_page_url":"https://doaj.org/article/8e7f150415f54117beec7e3a01ff5c82","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)","raw_type":"article"},{"id":"pmh:oai:helda.helsinki.fi:10138/329744","is_oa":true,"landing_page_url":"http://hdl.handle.net/10138/329744","pdf_url":null,"source":{"id":"https://openalex.org/S4210213322","display_name":"Ty\u00f6v\u00e4entutkimus Vuosikirja","issn_l":"0784-1272","issn":["0784-1272","1459-7780"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7993519","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7993519","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/220328","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/220328","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04087-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04087-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04087-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.7699999809265137,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321855","display_name":"Tekes","ror":"https://ror.org/02ag8cq23"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320323760","display_name":"Sigrid Jus\u00e9liuksen S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/00ckakm23"},{"id":"https://openalex.org/F4320326518","display_name":"Tays","ror":"https://ror.org/02hvt5f17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3138492685.pdf","grobid_xml":"https://content.openalex.org/works/W3138492685.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W207056551","https://openalex.org/W273955616","https://openalex.org/W1584790813","https://openalex.org/W1590798843","https://openalex.org/W1940255384","https://openalex.org/W1967195968","https://openalex.org/W1973639800","https://openalex.org/W1973870087","https://openalex.org/W1979781154","https://openalex.org/W1999536767","https://openalex.org/W2000742295","https://openalex.org/W2035421116","https://openalex.org/W2043071551","https://openalex.org/W2069642599","https://openalex.org/W2070232733","https://openalex.org/W2089041106","https://openalex.org/W2108147510","https://openalex.org/W2108557697","https://openalex.org/W2131682431","https://openalex.org/W2132983397","https://openalex.org/W2150743590","https://openalex.org/W2156247618","https://openalex.org/W2156506903","https://openalex.org/W2164137002","https://openalex.org/W2182117355","https://openalex.org/W2294811530","https://openalex.org/W2304211375","https://openalex.org/W2343433750","https://openalex.org/W2344926747","https://openalex.org/W2605177850","https://openalex.org/W2610643013","https://openalex.org/W2613978126","https://openalex.org/W2670890989","https://openalex.org/W2671261300","https://openalex.org/W2752126733","https://openalex.org/W2760240113","https://openalex.org/W2771008898","https://openalex.org/W2774104433","https://openalex.org/W2797240324","https://openalex.org/W2797380951","https://openalex.org/W2800460164","https://openalex.org/W2922097516","https://openalex.org/W2949975396","https://openalex.org/W2951124440","https://openalex.org/W2990308980","https://openalex.org/W3013242650","https://openalex.org/W3105082142","https://openalex.org/W4245697527","https://openalex.org/W6737704661"],"related_works":["https://openalex.org/W2060496539","https://openalex.org/W4280506224","https://openalex.org/W2018330851","https://openalex.org/W2143290387","https://openalex.org/W3201606428","https://openalex.org/W2040128205","https://openalex.org/W2060075608","https://openalex.org/W2026444950","https://openalex.org/W2092033815","https://openalex.org/W2168929838"],"abstract_inverted_index":{"BACKGROUND:":[0],"Deep":[1],"immune":[2,31,96,125,240,256],"receptor":[3,19],"sequencing,":[4],"RepSeq,":[5],"provides":[6],"unprecedented":[7],"opportunities":[8],"for":[9,64,87,148,262],"identifying":[10],"and":[11,127,193],"studying":[12],"condition-associated":[13,68,265],"T-cell":[14,18],"clonotypes,":[15],"represented":[16],"by":[17,71,188,234],"(TCR)":[20],"CDR3":[21,49,55],"sequences.":[22],"However,":[23],"due":[24],"to":[25,46,52,150,209,227],"the":[26,30,65,134,137,151,155,200],"immense":[27],"diversity":[28],"of":[29,34,54,67,76,92,112,136,163,173,191,221,242,255,264],"repertoire,":[32],"identification":[33,66,263],"condition":[35,229],"relevant":[36,226],"TCR":[37,69,159],"CDR3s":[38,70,113,143],"from":[39],"total":[40,158],"repertoires":[41],"has":[42],"mostly":[43],"been":[44],"limited":[45],"either":[47],"\"public\"":[48],"sequences":[50,203,225],"or":[51],"comparisons":[53],"frequencies":[56],"observed":[57],"in":[58,144,199,211],"a":[59,85],"single":[60],"individual.":[61],"A":[62],"methodology":[63],"direct":[72,88],"population":[73,89],"level":[74,90,135],"comparison":[75,91],"RepSeq":[77,93,161],"samples":[78,94],"is":[79],"currently":[80],"lacking.":[81],"RESULTS:":[82],"We":[83,153,237],"present":[84],"method":[86,107,156,178],"using":[95],"repertoire":[97,257],"sub-units":[98],"(or":[99],"sub-repertoires)":[100],"that":[101,239],"are":[102],"shared":[103,246],"across":[104,122,247],"individuals.":[105],"The":[106,177],"first":[108],"performs":[109,128],"unsupervised":[110],"clustering":[111],"within":[114],"each":[115,228],"sample.":[116],"It":[117,140,214],"then":[118],"finds":[119],"matching":[120],"clusters":[121],"samples,":[123],"called":[124],"sub-repertoires,":[126],"statistical":[129],"differential":[130],"abundance":[131],"testing":[132],"at":[133],"identified":[138,180],"sub-repertoires.":[139],"finally":[141],"ranks":[142],"differentially":[145],"abundant":[146],"sub-repertoires":[147,241],"relevance":[149],"condition.":[152],"applied":[154],"on":[157,170],"CDR3\u03b2":[160,184,202,224],"datasets":[162,172],"celiac":[164,181,212],"disease":[165,182],"patients,":[166],"as":[167,169,186,252,260],"well":[168],"public":[171],"yellow":[174],"fever":[175],"vaccination.":[176],"successfully":[179,216],"associated":[183],"sequences,":[185],"evidenced":[187],"considerable":[189],"agreement":[190],"TRBV-gene":[192],"positional":[194],"amino":[195],"acid":[196],"usage":[197],"patterns":[198],"detected":[201],"with":[204],"previously":[205,222],"known":[206,223],"CDR3\u03b2s":[207],"specific":[208],"gluten":[210],"disease.":[213],"also":[215],"recovered":[217],"significantly":[218],"high":[219],"numbers":[220],"than":[230],"would":[231],"be":[232],"expected":[233],"chance.":[235],"CONCLUSION:":[236],"conclude":[238],"similar":[243],"immuno-genomic":[244],"features":[245],"unrelated":[248],"individuals":[249],"can":[250],"serve":[251],"viable":[253],"units":[254],"comparison,":[258],"serving":[259],"proxy":[261],"CDR3s.":[266]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
