{"id":"https://openalex.org/W3164145064","doi":"https://doi.org/10.1186/s12859-021-04058-y","title":"Instance-based error correction for short reads of disease-associated genes","display_name":"Instance-based error correction for short reads of disease-associated genes","publication_year":2021,"publication_date":"2021-06-02","ids":{"openalex":"https://openalex.org/W3164145064","doi":"https://doi.org/10.1186/s12859-021-04058-y","mag":"3164145064","pmid":"https://pubmed.ncbi.nlm.nih.gov/34078284"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04058-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04058-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04058-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04058-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100342900","display_name":"Xuan Zhang","orcid":"https://orcid.org/0000-0002-3089-9809"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Xuan Zhang","raw_affiliation_strings":["Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018620403","display_name":"Yuansheng Liu","orcid":"https://orcid.org/0000-0002-7680-3155"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yuansheng Liu","raw_affiliation_strings":["Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026047510","display_name":"Zu\u2010Guo Yu","orcid":"https://orcid.org/0000-0001-5913-9646"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zuguo Yu","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University, Xiangtan, 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education and Hunan Key Laboratory for Computation and Simulation in Science and Engineering, Xiangtan University, Xiangtan, 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045600512","display_name":"Michael Blumenstein","orcid":"https://orcid.org/0000-0002-9908-3744"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Michael Blumenstein","raw_affiliation_strings":["Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012268284","display_name":"Gy\u00f6rgy Hutv\u00e1gner","orcid":"https://orcid.org/0000-0002-7231-9446"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Gyorgy Hutvagner","raw_affiliation_strings":["Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017861049","display_name":"Jinyan Li","orcid":"https://orcid.org/0000-0003-1833-7413"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Jinyan Li","raw_affiliation_strings":["Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia. Jinyan.Li@uts.edu.au","Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia"],"raw_orcid":"https://orcid.org/0000-0003-1833-7413","affiliations":[{"raw_affiliation_string":"Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia. Jinyan.Li@uts.edu.au","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"Advanced Analytics Institute, Faculty of Engineering and IT, University of Technology Sydney, Ultimo, NSW, 2007, Australia","institution_ids":["https://openalex.org/I114017466"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017861049"],"corresponding_institution_ids":["https://openalex.org/I114017466"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.148,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.43955409,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"22","issue":"S6","first_page":"142","last_page":"142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7645000219345093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7645000219345093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.07039999961853027,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.049300000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7769759893417358},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5119251012802124},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.5101202130317688},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5094717144966125},{"id":"https://openalex.org/keywords/error-detection-and-correction","display_name":"Error detection and correction","score":0.499009370803833},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4564104676246643},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4535844624042511},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45248016715049744},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3558664917945862},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3524990677833557},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.29924237728118896}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7769759893417358},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5119251012802124},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5101202130317688},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5094717144966125},{"id":"https://openalex.org/C103088060","wikidata":"https://www.wikidata.org/wiki/Q1062839","display_name":"Error detection and correction","level":2,"score":0.499009370803833},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4564104676246643},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4535844624042511},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45248016715049744},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3558664917945862},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3524990677833557},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.29924237728118896},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04058-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04058-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04058-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34078284","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34078284","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c32c72b410ff454c9fec6c4aa7cdbde1","is_oa":true,"landing_page_url":"https://doaj.org/article/c32c72b410ff454c9fec6c4aa7cdbde1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss S6, Pp 1-18 (2021)","raw_type":"article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/150806","is_oa":true,"landing_page_url":"http://hdl.handle.net/10453/150806","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8170817","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8170817","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04058-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04058-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04058-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G8732994852","display_name":null,"funder_award_id":"61828203","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164145064.pdf","grobid_xml":"https://content.openalex.org/works/W3164145064.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1837902721","https://openalex.org/W1879624628","https://openalex.org/W1903088142","https://openalex.org/W1919257374","https://openalex.org/W1980667059","https://openalex.org/W2001079689","https://openalex.org/W2012609840","https://openalex.org/W2026721694","https://openalex.org/W2061042699","https://openalex.org/W2077224394","https://openalex.org/W2095680943","https://openalex.org/W2099024793","https://openalex.org/W2107772251","https://openalex.org/W2120641928","https://openalex.org/W2120902911","https://openalex.org/W2121530737","https://openalex.org/W2124960286","https://openalex.org/W2125195105","https://openalex.org/W2127768708","https://openalex.org/W2129276621","https://openalex.org/W2134482846","https://openalex.org/W2142995543","https://openalex.org/W2152397294","https://openalex.org/W2153737961","https://openalex.org/W2157539385","https://openalex.org/W2160665949","https://openalex.org/W2167469524","https://openalex.org/W2168133698","https://openalex.org/W2615033551","https://openalex.org/W2804822363","https://openalex.org/W2884724486","https://openalex.org/W2889874867","https://openalex.org/W2953339515","https://openalex.org/W2989187010","https://openalex.org/W3097167873","https://openalex.org/W3114466667","https://openalex.org/W6683495024"],"related_works":["https://openalex.org/W4210830088","https://openalex.org/W1992950355","https://openalex.org/W4381279187","https://openalex.org/W2013063066","https://openalex.org/W54719527","https://openalex.org/W2327661880","https://openalex.org/W4225379983","https://openalex.org/W2794975275","https://openalex.org/W3179112149","https://openalex.org/W2128222086"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genomic":[1],"reads":[2,23,61,107],"from":[3],"sequencing":[4,31],"platforms":[5],"contain":[6],"random":[7],"errors.":[8],"Global":[9],"correction":[10,58,204],"algorithms":[11],"have":[12],"been":[13],"developed,":[14],"aiming":[15],"to":[16,37,71,83,115,124,192],"rectify":[17,101],"all":[18],"possible":[19,102,191],"errors":[20,103,215],"in":[21,104,131],"the":[22,29,34,51,73,78,96,105,155,161,179],"using":[24],"generic":[25],"genome-wide":[26],"patterns.":[27],"However,":[28],"non-uniform":[30],"depths":[32],"hinder":[33],"global":[35,52],"approach":[36],"conduct":[38,55],"effective":[39],"error":[40,57,203],"removal.":[41],"As":[42],"some":[43,218],"genes":[44,64,146],"may":[45],"get":[46],"under-corrected":[47],"or":[48,65,91],"over-corrected":[49],"by":[50],"approach,":[53],"we":[54],"instance-based":[56],"for":[59,87,231],"short":[60,106],"of":[62,77,108,142,157,181],"disease-associated":[63,109],"pathways.":[66],"The":[67,152],"paramount":[68],"requirement":[69],"is":[70,114],"ensure":[72],"relevant":[74],"reads,":[75],"instead":[76],"whole":[79],"genome,":[80],"are":[81,129],"error-free":[82],"provide":[84],"significant":[85],"benefits":[86],"single-nucleotide":[88],"polymorphism":[89],"(SNP)":[90],"variant":[92],"calling":[93],"studies":[94,212],"on":[95,136,164,173,197,233],"specific":[97,198],"genes.":[98,126],"RESULTS:":[99],"To":[100],"genes,":[110,199],"our":[111,158],"novel":[112],"idea":[113],"exploit":[116],"local":[117],"sequence":[118,174,208],"features":[119],"and":[120,139,149,167,183,205,229],"statistics":[121],"directly":[122],"related":[123],"these":[125],"Extensive":[127],"experiments":[128],"conducted":[130],"comparison":[132],"with":[133,160],"state-of-the-art":[134],"methods":[135],"both":[137],"simulated":[138],"real":[140],"datasets":[141],"lung":[143],"cancer":[144],"associated":[145],"(including":[147],"single-end":[148],"paired-end":[150],"reads).":[151],"results":[153,176],"demonstrated":[154],"superiority":[156],"method":[159],"best":[162],"performance":[163],"precision,":[165],"recall":[166],"gain":[168],"rate,":[169],"as":[170,172],"well":[171],"assembly":[175],"(e.g.,":[177],"N50,":[178],"length":[180],"contig":[182,184],"quality).":[185],"CONCLUSION:":[186],"Instance-based":[187],"strategy":[188],"makes":[189],"it":[190],"explore":[193],"fine-grained":[194],"patterns":[195],"focusing":[196],"providing":[200,226],"high":[201,227],"precision":[202,228],"convincing":[206],"gene":[207],"assembly.":[209],"SNP":[210,220],"case":[211],"show":[213],"that":[214],"occurring":[216],"at":[217],"traditional":[219],"areas":[221],"can":[222],"be":[223],"accurately":[224],"corrected,":[225],"sensitivity":[230],"investigations":[232],"disease-causing":[234],"point":[235],"mutations.":[236]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
