{"id":"https://openalex.org/W3134629074","doi":"https://doi.org/10.1186/s12859-021-04049-z","title":"R.ROSETTA: an interpretable machine learning framework","display_name":"R.ROSETTA: an interpretable machine learning framework","publication_year":2021,"publication_date":"2021-03-06","ids":{"openalex":"https://openalex.org/W3134629074","doi":"https://doi.org/10.1186/s12859-021-04049-z","mag":"3134629074","pmid":"https://pubmed.ncbi.nlm.nih.gov/33676405"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04049-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04049-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04049-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04049-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018408470","display_name":"Mateusz Garbulowski","orcid":"https://orcid.org/0000-0002-2497-194X"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Mateusz Garbulowski","raw_affiliation_strings":["Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062357087","display_name":"Klev Diamanti","orcid":"https://orcid.org/0000-0002-4922-8415"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Klev Diamanti","raw_affiliation_strings":["Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020734134","display_name":"Karolina Smoli\u0144ska","orcid":"https://orcid.org/0000-0003-0907-5298"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Karolina Smoli\u0144ska","raw_affiliation_strings":["Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013669016","display_name":"Nicholas Baltzer","orcid":"https://orcid.org/0000-0001-8505-403X"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I4210129856","display_name":"Cancer Registry of Norway","ror":"https://ror.org/03sm1ej59","country_code":"NO","type":"archive","lineage":["https://openalex.org/I1333353642","https://openalex.org/I4210129856","https://openalex.org/I4210149801","https://openalex.org/I4210163359"]}],"countries":["NO","SE"],"is_corresponding":false,"raw_author_name":"Nicholas Baltzer","raw_affiliation_strings":["Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","Department of Research, Cancer Registry of Norway, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Department of Research, Cancer Registry of Norway, Oslo, Norway","institution_ids":["https://openalex.org/I4210129856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081714832","display_name":"Patricia Stoll","orcid":null},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH","SE"],"is_corresponding":false,"raw_author_name":"Patricia Stoll","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland","Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074960011","display_name":"Susanne Bornel\u00f6v","orcid":"https://orcid.org/0000-0001-9276-9981"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I2801316944","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2801316944"]}],"countries":["GB","SE"],"is_corresponding":false,"raw_author_name":"Susanne Bornel\u00f6v","raw_affiliation_strings":["Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK","Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Research UK Cambridge Institute, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I2801316944","https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004184219","display_name":"Aleksander \u00d8hrn","orcid":null},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Aleksander \u00d8hrn","raw_affiliation_strings":["Department of Informatics, University of Oslo, Oslo, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Oslo, Oslo, Norway","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040384236","display_name":"Lars Feuk","orcid":"https://orcid.org/0000-0003-2355-2919"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Lars Feuk","raw_affiliation_strings":["Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050406527","display_name":"Jan Komorowski","orcid":"https://orcid.org/0000-0002-0766-8789"},"institutions":[{"id":"https://openalex.org/I123387679","display_name":"Uppsala University","ror":"https://ror.org/048a87296","country_code":"SE","type":"education","lineage":["https://openalex.org/I123387679"]},{"id":"https://openalex.org/I185977053","display_name":"Swedish Collegium for Advanced Study","ror":"https://ror.org/03gc71b86","country_code":"SE","type":"education","lineage":["https://openalex.org/I185977053"]},{"id":"https://openalex.org/I4210115859","display_name":"Behavioral Tech Research, Inc.","ror":"https://ror.org/02843s885","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115859"]},{"id":"https://openalex.org/I99542240","display_name":"Polish Academy of Sciences","ror":"https://ror.org/01dr6c206","country_code":"PL","type":"government","lineage":["https://openalex.org/I99542240"]}],"countries":["PL","SE","US"],"is_corresponding":false,"raw_author_name":"Jan Komorowski","raw_affiliation_strings":["Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden. jan.komorowski@icm.uu.se","Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland. jan.komorowski@icm.uu.se","Swedish Collegium for Advanced Study, Uppsala, Sweden. jan.komorowski@icm.uu.se","Washington National Primate Research Center, Seattle, WA, USA. jan.komorowski@icm.uu.se","Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-0766-8789","affiliations":[{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden. jan.komorowski@icm.uu.se","institution_ids":["https://openalex.org/I123387679"]},{"raw_affiliation_string":"Institute of Computer Science, Polish Academy of Sciences, Warsaw, Poland. jan.komorowski@icm.uu.se","institution_ids":["https://openalex.org/I99542240"]},{"raw_affiliation_string":"Swedish Collegium for Advanced Study, Uppsala, Sweden. jan.komorowski@icm.uu.se","institution_ids":["https://openalex.org/I185977053"]},{"raw_affiliation_string":"Washington National Primate Research Center, Seattle, WA, USA. jan.komorowski@icm.uu.se","institution_ids":["https://openalex.org/I4210115859"]},{"raw_affiliation_string":"Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden","institution_ids":["https://openalex.org/I123387679"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5018408470"],"corresponding_institution_ids":["https://openalex.org/I123387679"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.6286,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.83656319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"110","last_page":"110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.26510000228881836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.26510000228881836,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.19140000641345978,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.10670000314712524,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7301732301712036},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7234363555908203},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6658167839050293},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5897283554077148},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5381847620010376},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5032200217247009},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39599382877349854}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7301732301712036},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7234363555908203},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6658167839050293},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5897283554077148},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5381847620010376},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5032200217247009},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39599382877349854},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016022","descriptor_name":"Case-Control Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-021-04049-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04049-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04049-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33676405","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33676405","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:uu-441701","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-441701","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:doaj.org/article:820546b54c274d38b275e757175de873","is_oa":true,"landing_page_url":"https://doaj.org/article/820546b54c274d38b275e757175de873","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-18 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7937228","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7937228","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:www.duo.uio.no:10852/83785","is_oa":true,"landing_page_url":"http://hdl.handle.net/10852/83785","pdf_url":null,"source":{"id":"https://openalex.org/S4306401717","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04049-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04049-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04049-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4544143407","display_name":null,"funder_award_id":"2017-01861","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"},{"id":"https://openalex.org/G5985677022","display_name":null,"funder_award_id":"NO 0925-0001","funder_id":"https://openalex.org/F4320306080","funder_display_name":"Foundation for the National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320322602","display_name":"Polska Akademia Nauk","ror":"https://ror.org/01dr6c206"},{"id":"https://openalex.org/F4320324119","display_name":"Uppsala Universitet","ror":"https://ror.org/048a87296"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3134629074.pdf","grobid_xml":"https://content.openalex.org/works/W3134629074.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W5642450","https://openalex.org/W7023465","https://openalex.org/W273955616","https://openalex.org/W1483994939","https://openalex.org/W1499231756","https://openalex.org/W1540119895","https://openalex.org/W1553701556","https://openalex.org/W1570713908","https://openalex.org/W1586444875","https://openalex.org/W1630964756","https://openalex.org/W1661871015","https://openalex.org/W1724438491","https://openalex.org/W1979559301","https://openalex.org/W1982092236","https://openalex.org/W1986537524","https://openalex.org/W1993369399","https://openalex.org/W2003275871","https://openalex.org/W2011735284","https://openalex.org/W2013587512","https://openalex.org/W2015422863","https://openalex.org/W2018685944","https://openalex.org/W2033371754","https://openalex.org/W2038664279","https://openalex.org/W2040924621","https://openalex.org/W2042138998","https://openalex.org/W2045192866","https://openalex.org/W2046043287","https://openalex.org/W2049808835","https://openalex.org/W2051323365","https://openalex.org/W2058879468","https://openalex.org/W2060436244","https://openalex.org/W2096280725","https://openalex.org/W2104167780","https://openalex.org/W2126400212","https://openalex.org/W2130297133","https://openalex.org/W2133462743","https://openalex.org/W2143451122","https://openalex.org/W2151101158","https://openalex.org/W2160306985","https://openalex.org/W2160533336","https://openalex.org/W2278159086","https://openalex.org/W2282821441","https://openalex.org/W2326027920","https://openalex.org/W2516952556","https://openalex.org/W2522382993","https://openalex.org/W2527969051","https://openalex.org/W2559538826","https://openalex.org/W2568400186","https://openalex.org/W2570343052","https://openalex.org/W2588460665","https://openalex.org/W2594475271","https://openalex.org/W2608746496","https://openalex.org/W2770352382","https://openalex.org/W2783051773","https://openalex.org/W2786454292","https://openalex.org/W2791315675","https://openalex.org/W2802010309","https://openalex.org/W2810906666","https://openalex.org/W2884770325","https://openalex.org/W2945976633","https://openalex.org/W2964514340","https://openalex.org/W3005086430","https://openalex.org/W3008695158","https://openalex.org/W3125696332","https://openalex.org/W4212955077","https://openalex.org/W4249247926","https://openalex.org/W4255833381","https://openalex.org/W6600669965"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2081517010","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W2294221496"],"abstract_inverted_index":{"BACKGROUND:":[0],"Machine":[1],"learning":[2,52,65,128,223],"involves":[3],"strategies":[4],"and":[5,17,87,111,123,139,155,164,212,225],"algorithms":[6],"that":[7,158,204,230],"may":[8],"assist":[9],"bioinformatics":[10],"analyses":[11,224],"in":[12,24,260],"terms":[13],"of":[14,76,81,84,101,161,179,235,244],"data":[15,248,258],"mining":[16],"knowledge":[18],"discovery.":[19],"In":[20,57],"several":[21],"applications,":[22],"viz.":[23],"Life":[25],"Sciences,":[26],"it":[27,184],"is":[28,97,169],"often":[29],"more":[30],"important":[31,74],"to":[32,113,185,255],"understand":[33],"how":[34],"a":[35,186],"prediction":[36,43],"was":[37,44,79],"obtained":[38],"rather":[39],"than":[40],"knowing":[41],"what":[42],"made.":[45],"To":[46,175],"this":[47,58],"end":[48],"so-called":[49],"interpretable":[50,63,126,221],"machine":[51,64,127,222],"has":[53],"been":[54,109],"recently":[55],"advocated.":[56],"study,":[59],"we":[60,182],"implemented":[61],"an":[62,98,190],"package":[66,119,151,168,232,251],"based":[67],"on":[68],"the":[69,85,93,114,146,177,180,241,250],"rough":[70],"set":[71],"theory.":[72],"An":[73],"aim":[75],"our":[77,231],"work":[78],"provision":[80],"statistical":[82],"properties":[83],"models":[86],"their":[88],"components.":[89],"RESULTS:":[90],"We":[91,228],"present":[92],"R.ROSETTA":[94,130,167,216,245],"package,":[95,181],"which":[96],"R":[99,115],"wrapper":[100],"ROSETTA":[102,106],"framework.":[103],"The":[104,118,150,166],"original":[105],"functions":[107],"have":[108],"improved":[110],"adapted":[112],"programming":[116],"environment.":[117],"allows":[120],"for":[121,137,143,198,220,237],"building":[122],"analyzing":[124],"non-linear":[125],"models.":[129],"gathers":[131],"combinatorial":[132],"statistics":[133,154],"via":[134],"rule-based":[135],"modelling":[136],"accessible":[138],"transparent":[140],"results,":[141],"well-suited":[142],"adoption":[144],"within":[145],"greater":[147],"scientific":[148],"community.":[149],"also":[152],"provides":[153,217],"visualization":[156],"tools":[157],"facilitate":[159],"minimization":[160],"analysis":[162],"bias":[163],"noise.":[165],"freely":[170],"available":[171],"at":[172],"https://github.com/komorowskilab/R.ROSETTA":[173],".":[174],"illustrate":[176],"usage":[178],"applied":[183],"transcriptome":[187,247],"dataset":[188],"from":[189],"autism":[191],"case-control":[192],"study.":[193],"Our":[194],"tool":[195],"provided":[196],"hypotheses":[197],"potential":[199],"co-predictive":[200],"mechanisms":[201],"among":[202],"features":[203],"discerned":[205],"phenotype":[206],"classes.":[207],"These":[208],"co-predictors":[209],"represented":[210],"neurodevelopmental":[211],"autism-related":[213,238],"genes.":[214,239],"CONCLUSIONS:":[215],"new":[218],"insights":[219],"knowledge-based":[226],"systems.":[227],"demonstrated":[229],"facilitated":[233],"detection":[234],"dependencies":[236],"Although":[240],"sample":[242],"application":[243],"illustrates":[246],"analysis,":[249],"can":[252],"be":[253],"used":[254],"analyze":[256],"any":[257],"organized":[259],"decision":[261],"tables.":[262]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":7}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
