{"id":"https://openalex.org/W3120520077","doi":"https://doi.org/10.1186/s12859-021-04047-1","title":"Deep active learning for classifying cancer pathology reports","display_name":"Deep active learning for classifying cancer pathology reports","publication_year":2021,"publication_date":"2021-03-09","ids":{"openalex":"https://openalex.org/W3120520077","doi":"https://doi.org/10.1186/s12859-021-04047-1","mag":"3120520077","pmid":"https://pubmed.ncbi.nlm.nih.gov/33750288"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04047-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04047-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04047-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04047-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044544015","display_name":"Kevin De Angeli","orcid":"https://orcid.org/0000-0001-8493-0528"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]},{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin De Angeli","raw_affiliation_strings":["Oak Ridge National Lab, Oak Ridge, TN, USA","The Bredesen Center, The University of Tennessee, Knoxville, TN, US"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"The Bredesen Center, The University of Tennessee, Knoxville, TN, US","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047655591","display_name":"Shang Gao","orcid":"https://orcid.org/0000-0003-1803-1457"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shang Gao","raw_affiliation_strings":["Oak Ridge National Lab, Oak Ridge, TN, USA. gaos@ornl.gov","Oak Ridge National Lab, Oak Ridge, TN, USA"],"raw_orcid":"https://orcid.org/0000-0003-1803-1457","affiliations":[{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA. gaos@ornl.gov","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079607802","display_name":"Mohammed Alawad","orcid":"https://orcid.org/0000-0002-7491-0440"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammed Alawad","raw_affiliation_strings":["Oak Ridge National Lab, Oak Ridge, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054049458","display_name":"Hong\u2010Jun Yoon","orcid":"https://orcid.org/0000-0002-5450-5878"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong-Jun Yoon","raw_affiliation_strings":["Oak Ridge National Lab, Oak Ridge, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075593089","display_name":"Noah Schaefferkoetter","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noah Schaefferkoetter","raw_affiliation_strings":["Oak Ridge National Lab, Oak Ridge, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075691677","display_name":"Xiao\u2010Cheng Wu","orcid":"https://orcid.org/0000-0003-3663-5027"},"institutions":[{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao-Cheng Wu","raw_affiliation_strings":["Louisiana Tumor Registry, Louisiana State University Health Sciences Center, School of Public Health, New Orleans, LA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Louisiana Tumor Registry, Louisiana State University Health Sciences Center, School of Public Health, New Orleans, LA, USA","institution_ids":["https://openalex.org/I75420490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044901389","display_name":"Eric B. Durbin","orcid":"https://orcid.org/0000-0002-5600-7645"},"institutions":[{"id":"https://openalex.org/I143302722","display_name":"University of Kentucky","ror":"https://ror.org/02k3smh20","country_code":"US","type":"education","lineage":["https://openalex.org/I143302722"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric B. Durbin","raw_affiliation_strings":["College of Medicine, University of Kentucky, Lexington, KY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine, University of Kentucky, Lexington, KY, USA","institution_ids":["https://openalex.org/I143302722"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075544315","display_name":"Jennifer A. Doherty","orcid":"https://orcid.org/0000-0002-1454-8187"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Doherty","raw_affiliation_strings":["Utah Cancer Registry, University of Utah School of Medicine, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Utah Cancer Registry, University of Utah School of Medicine, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000035861","display_name":"Antoinette M. Stroup","orcid":"https://orcid.org/0000-0003-3341-4018"},"institutions":[{"id":"https://openalex.org/I1338139034","display_name":"New Jersey Department of Health","ror":"https://ror.org/03kmrjq19","country_code":"US","type":"government","lineage":["https://openalex.org/I1338139034"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antoinette Stroup","raw_affiliation_strings":["New Jersey State Cancer Registry, New Jersey Department of Health, Trenton, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New Jersey State Cancer Registry, New Jersey Department of Health, Trenton, NJ, USA","institution_ids":["https://openalex.org/I1338139034"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066875900","display_name":"Linda Coyle","orcid":null},"institutions":[{"id":"https://openalex.org/I4210110061","display_name":"Information Management Services","ror":"https://ror.org/020k7fn51","country_code":"US","type":"company","lineage":["https://openalex.org/I4210110061"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linda Coyle","raw_affiliation_strings":["Information Management Services Inc., Calverton, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Management Services Inc., Calverton, MD, USA","institution_ids":["https://openalex.org/I4210110061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048121583","display_name":"Lynne Penberthy","orcid":"https://orcid.org/0000-0001-9372-9869"},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lynne Penberthy","raw_affiliation_strings":["Surveillance Research Program, Division of Cancer Control and Population Sciences, National Cancer Institute, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Surveillance Research Program, Division of Cancer Control and Population Sciences, National Cancer Institute, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210140884"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014968146","display_name":"Georgia D. Tourassi","orcid":"https://orcid.org/0000-0002-9418-9638"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Georgia Tourassi","raw_affiliation_strings":["Oak Ridge National Lab, Oak Ridge, TN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oak Ridge National Lab, Oak Ridge, TN, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5047655591"],"corresponding_institution_ids":["https://openalex.org/I1289243028"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.9172,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.94435715,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"113","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12072","display_name":"Machine Learning and Algorithms","score":0.6215000152587891,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12072","display_name":"Machine Learning and Algorithms","score":0.6215000152587891,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.042500000447034836,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.03150000050663948,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/active-learning","display_name":"Active learning (machine learning)","score":0.8324941396713257},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7538163661956787},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7482720017433167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7127135992050171},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.4955407381057739},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.470365971326828},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4601465165615082},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.425326406955719},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.416519433259964}],"concepts":[{"id":"https://openalex.org/C77967617","wikidata":"https://www.wikidata.org/wiki/Q4677561","display_name":"Active learning (machine learning)","level":2,"score":0.8324941396713257},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7538163661956787},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7482720017433167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7127135992050171},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.4955407381057739},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.470365971326828},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4601465165615082},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.425326406955719},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.416519433259964},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-021-04047-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04047-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04047-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33750288","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33750288","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:uknowledge.uky.edu:kcr_facpub-1001","is_oa":true,"landing_page_url":"https://uknowledge.uky.edu/kcr_facpub/2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402623","display_name":"UKnowledge (University of Kentucky)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I143302722","host_organization_name":"University of Kentucky","host_organization_lineage":["https://openalex.org/I143302722"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kentucky Cancer Registry Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:f29e754b08004eb1a87e76068fb2998c","is_oa":true,"landing_page_url":"https://doaj.org/article/f29e754b08004eb1a87e76068fb2998c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-25 (2021)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1769974","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1769974","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:osti.gov:1788080","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1788080","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pubmedcentral.nih.gov:7941989","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7941989","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04047-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04047-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04047-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G1645119126","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2526390019","display_name":null,"funder_award_id":"P30 CA177558","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G2569679037","display_name":null,"funder_award_id":"JDACS4C","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2584197162","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2757267231","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G3049477530","display_name":null,"funder_award_id":"Contract No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G314071323","display_name":null,"funder_award_id":"JDACS4C","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3299391273","display_name":null,"funder_award_id":"E-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4957472368","display_name":null,"funder_award_id":". DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6129992089","display_name":null,"funder_award_id":"DE-AC05-","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G6144542739","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G6864165199","display_name":null,"funder_award_id":"DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G6911681599","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7769062580","display_name":null,"funder_award_id":"No. DE-AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"},{"id":"https://openalex.org/G7995982022","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8906985441","display_name":null,"funder_award_id":"00OR22725","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8943143067","display_name":null,"funder_award_id":"AC05-00OR22725","funder_id":"https://openalex.org/F4320316892","funder_display_name":"UT-Battelle"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320316892","display_name":"UT-Battelle","ror":"https://ror.org/04nza6677"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320338284","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3120520077.pdf","grobid_xml":"https://content.openalex.org/works/W3120520077.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W96276655","https://openalex.org/W1484084878","https://openalex.org/W1507985183","https://openalex.org/W1528012351","https://openalex.org/W1866463160","https://openalex.org/W1972508834","https://openalex.org/W1995875735","https://openalex.org/W2021367230","https://openalex.org/W2080021732","https://openalex.org/W2085989833","https://openalex.org/W2095629250","https://openalex.org/W2104848109","https://openalex.org/W2107131609","https://openalex.org/W2114663556","https://openalex.org/W2127314673","https://openalex.org/W2132910334","https://openalex.org/W2135892731","https://openalex.org/W2138517257","https://openalex.org/W2171671120","https://openalex.org/W2185323257","https://openalex.org/W2441977585","https://openalex.org/W2471138382","https://openalex.org/W2611254939","https://openalex.org/W2742947407","https://openalex.org/W2785787385","https://openalex.org/W2805089815","https://openalex.org/W2884001105","https://openalex.org/W2903158431","https://openalex.org/W2951786554","https://openalex.org/W2951911250","https://openalex.org/W2963742748","https://openalex.org/W2981133974","https://openalex.org/W2985301765","https://openalex.org/W3011720761","https://openalex.org/W3024368629","https://openalex.org/W3150545588","https://openalex.org/W3198835821"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W4226493464","https://openalex.org/W4312417841","https://openalex.org/W4372048956","https://openalex.org/W3193565141","https://openalex.org/W3133861977","https://openalex.org/W2951211570","https://openalex.org/W3167935049","https://openalex.org/W3103566983","https://openalex.org/W3029198973"],"abstract_inverted_index":{"BACKGROUND:":[0],"Automated":[1],"text":[2,77],"classification":[3,78,98],"has":[4],"many":[5],"important":[6],"applications":[7],"in":[8],"the":[9,38,54,76,83,148,239,246],"clinical":[10],"setting;":[11],"however,":[12],"obtaining":[13],"labelled":[14,41,130,135,159,164,242],"data":[15,42,243],"for":[16],"training":[17],"machine":[18],"learning":[19,22,30,59,88,112,151,182,192,206,233],"and":[20,27,64,95,107,172,216],"deep":[21],"models":[23],"is":[24],"often":[25],"difficult":[26],"expensive.":[28],"Active":[29,205],"techniques":[31,234],"may":[32],"mitigate":[33],"this":[34,50],"challenge":[35],"by":[36,199,211],"reducing":[37],"amount":[39,240],"of":[40,56,85,139,168,241],"required":[43],"to":[44,188,221,244],"effectively":[45],"train":[46],"a":[47,71,227,250],"model.":[48,79],"In":[49],"study,":[51],"we":[52],"analyze":[53],"effectiveness":[55],"11":[57],"active":[58,87,111,122,140,150,169,181,191,232],"algorithms":[60],"on":[61,104,196,201],"classifying":[62],"subsite":[63],"histology":[65],"from":[66],"cancer":[67],"pathology":[68],"reports":[69],"using":[70,90,230,253],"Convolutional":[72],"Neural":[73],"Network":[74],"as":[75,249],"RESULTS:":[80],"We":[81,184],"compare":[82],"performance":[84,195,248],"each":[86,137,166],"strategy":[89],"two":[91,96],"differently":[92],"sized":[93],"datasets":[94],"different":[97,149],"tasks.":[99],"Our":[100,223],"results":[101,224],"show":[102,225],"that":[103,186,226],"all":[105,110,179],"tasks":[106],"dataset":[108,127,156,228,251],"sizes,":[109],"strategies":[113,116],"except":[114],"diversity-sampling":[115],"outperformed":[117],"random":[118,189,254],"sampling,":[119,190],"i.e.,":[120],"no":[121,144],"learning.":[123],"On":[124,153],"our":[125,154],"large":[126],"(15K":[128],"initial":[129,158],"samples,":[131,160],"adding":[132,161],"15K":[133],"additional":[134,163],"samples":[136,165,220],"iteration":[138,167],"learning),":[141,170],"there":[142],"was":[143],"clear":[145],"winner":[146],"between":[147],"strategies.":[152],"small":[155],"(1K":[157],"1K":[162],"marginal":[171],"ratio":[173],"uncertainty":[174],"sampling":[175],"performed":[176],"better":[177],"than":[178,237],"other":[180],"techniques.":[183],"found":[185],"compared":[187],"strongly":[193],"helps":[194],"rare":[197],"classes":[198],"focusing":[200],"underrepresented":[202],"classes.":[203],"CONCLUSIONS:":[204],"can":[207],"save":[208],"annotation":[209],"cost":[210],"helping":[212],"human":[213],"annotators":[214],"efficiently":[215],"intelligently":[217],"select":[218],"which":[219],"label.":[222],"constructed":[229,252],"effective":[231],"requires":[235],"less":[236],"half":[238],"achieve":[245],"same":[247],"sampling.":[255]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":3}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
