{"id":"https://openalex.org/W3131540757","doi":"https://doi.org/10.1186/s12859-021-04044-4","title":"Biomedical articles share annotations with their citation neighbors","display_name":"Biomedical articles share annotations with their citation neighbors","publication_year":2021,"publication_date":"2021-02-26","ids":{"openalex":"https://openalex.org/W3131540757","doi":"https://doi.org/10.1186/s12859-021-04044-4","mag":"3131540757","pmid":"https://pubmed.ncbi.nlm.nih.gov/33637047"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04044-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04044-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04044-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04044-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002036038","display_name":"Raul Rodriguez\u2010Esteban","orcid":"https://orcid.org/0000-0002-9494-9609"},"institutions":[{"id":"https://openalex.org/I118019719","display_name":"Roche (Switzerland)","ror":"https://ror.org/00by1q217","country_code":"CH","type":"company","lineage":["https://openalex.org/I118019719"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Raul Rodriguez-Esteban","raw_affiliation_strings":["Roche Innovation Center Basel, Roche Pharmaceutical Research and Early Development, 4070, Basel, Switzerland. raul.rodriguez.esteban@gmail.com","Roche Innovation Center Basel, Roche Pharmaceutical Research and Early Development, 4070, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roche Innovation Center Basel, Roche Pharmaceutical Research and Early Development, 4070, Basel, Switzerland. raul.rodriguez.esteban@gmail.com","institution_ids":["https://openalex.org/I118019719"]},{"raw_affiliation_string":"Roche Innovation Center Basel, Roche Pharmaceutical Research and Early Development, 4070, Basel, Switzerland","institution_ids":["https://openalex.org/I118019719"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5002036038"],"corresponding_institution_ids":["https://openalex.org/I118019719"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.1739,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65935313,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"22","issue":"1","first_page":"95","last_page":"95"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.5230000019073486,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10102","display_name":"scientometrics and bibliometrics research","score":0.5230000019073486,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.12210000306367874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12648","display_name":"Academic Writing and Publishing","score":0.07829999923706055,"subfield":{"id":"https://openalex.org/subfields/1207","display_name":"History and Philosophy of Science"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.8700538277626038},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8503374457359314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6667335033416748},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.5554432272911072},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5445261001586914},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5256021022796631},{"id":"https://openalex.org/keywords/citation-database","display_name":"Citation database","score":0.5151430368423462},{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.5047281980514526},{"id":"https://openalex.org/keywords/citation-analysis","display_name":"Citation analysis","score":0.42646878957748413},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32553815841674805},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.3237904906272888},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1262618899345398},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11821240186691284},{"id":"https://openalex.org/keywords/history","display_name":"History","score":0.09375467896461487},{"id":"https://openalex.org/keywords/scopus","display_name":"Scopus","score":0.07170116901397705},{"id":"https://openalex.org/keywords/archaeology","display_name":"Archaeology","score":0.05643576383590698}],"concepts":[{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.8700538277626038},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8503374457359314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6667335033416748},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.5554432272911072},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5445261001586914},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5256021022796631},{"id":"https://openalex.org/C2991937666","wikidata":"https://www.wikidata.org/wiki/Q206290","display_name":"Citation database","level":4,"score":0.5151430368423462},{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.5047281980514526},{"id":"https://openalex.org/C105345328","wikidata":"https://www.wikidata.org/wiki/Q206276","display_name":"Citation analysis","level":3,"score":0.42646878957748413},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32553815841674805},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.3237904906272888},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1262618899345398},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11821240186691284},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.09375467896461487},{"id":"https://openalex.org/C83867959","wikidata":"https://www.wikidata.org/wiki/Q371467","display_name":"Scopus","level":3,"score":0.07170116901397705},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.05643576383590698},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015706","descriptor_name":"Bibliometrics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015706","descriptor_name":"Bibliometrics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015706","descriptor_name":"Bibliometrics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-021-04044-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04044-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04044-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33637047","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33637047","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:9f6024694dfc4505a8b8bac900437d68","is_oa":true,"landing_page_url":"https://doaj.org/article/9f6024694dfc4505a8b8bac900437d68","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-10 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7912518","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7912518","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04044-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04044-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-04044-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3131540757.pdf","grobid_xml":"https://content.openalex.org/works/W3131540757.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W173202579","https://openalex.org/W1560206693","https://openalex.org/W1967370444","https://openalex.org/W1999809997","https://openalex.org/W2006276838","https://openalex.org/W2050763348","https://openalex.org/W2107580398","https://openalex.org/W2116127118","https://openalex.org/W2122732537","https://openalex.org/W2129113459","https://openalex.org/W2152143870","https://openalex.org/W2152398020","https://openalex.org/W2154139219","https://openalex.org/W2160171761","https://openalex.org/W2165797737","https://openalex.org/W2215240956","https://openalex.org/W2300618309","https://openalex.org/W2606900069","https://openalex.org/W2764161090","https://openalex.org/W2768480906","https://openalex.org/W2769543753","https://openalex.org/W2996640629","https://openalex.org/W4233120011","https://openalex.org/W4320800138","https://openalex.org/W6683709678"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2027604199"],"abstract_inverted_index":{"BACKGROUND:":[0],"Numerous":[1],"efforts":[2],"have":[3],"been":[4],"poured":[5],"into":[6],"annotating":[7],"the":[8,32,40,61,64,76,92],"wealth":[9],"of":[10,42,110],"knowledge":[11,106],"contained":[12],"in":[13,75],"biomedical":[14,111],"articles.":[15,112],"Thanks":[16],"to":[17,24,60,71,88],"such":[18],"efforts,":[19],"it":[20],"is":[21],"now":[22],"possible":[23],"quantitatively":[25],"explore":[26],"relations":[27],"between":[28],"these":[29],"annotations":[30,55,68],"and":[31,45,108],"citation":[33,58,85],"network":[34],"at":[35],"large":[36,44,90],"scale.":[37],"RESULTS:":[38],"With":[39],"aid":[41],"several":[43],"small":[46],"annotation":[47,109],"databases,":[48],"this":[49],"study":[50],"shows":[51],"that":[52,63,82],"articles":[53],"share":[54],"with":[56],"their":[57],"neighborhood":[59,86],"point":[62],"neighborhood's":[65],"most":[66],"common":[67],"are":[69],"likely":[70],"be":[72,99],"those":[73],"appearing":[74],"article.":[77],"CONCLUSIONS:":[78],"These":[79],"findings":[80],"posit":[81],"an":[83],"article's":[84,93],"defines":[87],"a":[89,102],"extent":[91],"annotated":[94],"content.":[95],"Thus,":[96],"citations":[97],"should":[98],"considered":[100],"as":[101],"foundation":[103],"for":[104],"future":[105],"management":[107]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2025-10-10T00:00:00"}
