{"id":"https://openalex.org/W3134196097","doi":"https://doi.org/10.1186/s12859-021-04035-5","title":"AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata","display_name":"AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata","publication_year":2021,"publication_date":"2021-03-10","ids":{"openalex":"https://openalex.org/W3134196097","doi":"https://doi.org/10.1186/s12859-021-04035-5","mag":"3134196097","pmid":"https://pubmed.ncbi.nlm.nih.gov/33691615"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04035-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04035-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04035-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04035-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101944225","display_name":"Xiao Liang","orcid":"https://orcid.org/0000-0001-8789-6732"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiao Liang","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA. xliangvt@vt.edu","Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA. xliangvt@vt.edu","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026057585","display_name":"Kyle Akers","orcid":"https://orcid.org/0000-0001-5093-4619"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Akers","raw_affiliation_strings":["Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058070876","display_name":"Ishi Keenum","orcid":"https://orcid.org/0000-0002-5441-4634"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ishi Keenum","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026126257","display_name":"Lauren Wind","orcid":"https://orcid.org/0000-0002-0805-1086"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lauren Wind","raw_affiliation_strings":["Department of Biological Systems Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biological Systems Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103218168","display_name":"Suraj Gupta","orcid":"https://orcid.org/0000-0003-2399-1604"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suraj Gupta","raw_affiliation_strings":["Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102751044","display_name":"Chaoqi Chen","orcid":"https://orcid.org/0000-0002-5645-7718"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaoqi Chen","raw_affiliation_strings":["School of Resource and Environmental Science, Wuhan University, 430072, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"School of Resource and Environmental Science, Wuhan University, 430072, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060250194","display_name":"Reem Aldaihani","orcid":"https://orcid.org/0000-0001-7000-6852"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reem Aldaihani","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046181665","display_name":"Amy Pruden","orcid":"https://orcid.org/0000-0002-3191-6244"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amy Pruden","raw_affiliation_strings":["Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Civil and Environmental Engineering, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100741571","display_name":"Liqing Zhang","orcid":"https://orcid.org/0000-0002-3936-4376"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liqing Zhang","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039445411","display_name":"K.F. Knowlton","orcid":"https://orcid.org/0000-0002-7181-4410"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katharine F. Knowlton","raw_affiliation_strings":["Department of Dairy Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Dairy Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075414423","display_name":"Kang Xia","orcid":"https://orcid.org/0000-0002-4092-3403"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kang Xia","raw_affiliation_strings":["School of Plant and Environmental Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"School of Plant and Environmental Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057291575","display_name":"Lenwood S. Heath","orcid":"https://orcid.org/0000-0003-1608-431X"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lenwood S. Heath","raw_affiliation_strings":["Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, 24061, Blacksburg, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5101944225"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5692,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.6367286,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"22","issue":"1","first_page":"117","last_page":"117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9688000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10419","display_name":"Pharmaceutical and Antibiotic Environmental Impacts","score":0.9593999981880188,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.9241346716880798},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8621973991394043},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6315510272979736},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5751152634620667},{"id":"https://openalex.org/keywords/metadata-management","display_name":"Metadata management","score":0.49670201539993286},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4603959918022156},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3868444561958313},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16530707478523254}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.9241346716880798},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8621973991394043},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6315510272979736},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5751152634620667},{"id":"https://openalex.org/C2779489174","wikidata":"https://www.wikidata.org/wiki/Q6822246","display_name":"Metadata management","level":3,"score":0.49670201539993286},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4603959918022156},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3868444561958313},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16530707478523254},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04035-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04035-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04035-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33691615","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33691615","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7944603","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7944603","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:b329ab4cf26a4b66818574e526ee6a93","is_oa":true,"landing_page_url":"https://doaj.org/article/b329ab4cf26a4b66818574e526ee6a93","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)","raw_type":"article"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/102720","is_oa":true,"landing_page_url":"http://hdl.handle.net/10919/102720","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article - Refereed"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04035-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04035-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04035-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.550000011920929,"display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G2125805108","display_name":null,"funder_award_id":"1545756","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3239519503","display_name":null,"funder_award_id":"2015-68003-2305","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G4099678361","display_name":null,"funder_award_id":"2015-68003-23050","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G5745083107","display_name":null,"funder_award_id":"2017-68003-26498","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8873244228","display_name":null,"funder_award_id":"2015-68003-23050","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"},{"id":"https://openalex.org/G8919468226","display_name":null,"funder_award_id":"2017-68003-26498","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3134196097.pdf","grobid_xml":"https://content.openalex.org/works/W3134196097.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1964640602","https://openalex.org/W1973192023","https://openalex.org/W1980863376","https://openalex.org/W1989348205","https://openalex.org/W1999404243","https://openalex.org/W2020862316","https://openalex.org/W2036288429","https://openalex.org/W2045204781","https://openalex.org/W2057197272","https://openalex.org/W2074986735","https://openalex.org/W2079397498","https://openalex.org/W2082174410","https://openalex.org/W2099837668","https://openalex.org/W2132886902","https://openalex.org/W2132993428","https://openalex.org/W2153899497","https://openalex.org/W2339423458","https://openalex.org/W2519145264","https://openalex.org/W2728028487","https://openalex.org/W2909240409","https://openalex.org/W2921147132","https://openalex.org/W2923923398","https://openalex.org/W2970541689","https://openalex.org/W3034733307","https://openalex.org/W3125817276","https://openalex.org/W4242318543"],"related_works":["https://openalex.org/W1487702188","https://openalex.org/W2374913837","https://openalex.org/W2460834149","https://openalex.org/W1512114296","https://openalex.org/W2354316773","https://openalex.org/W2376038160","https://openalex.org/W4205875026","https://openalex.org/W2389651964","https://openalex.org/W2374161210","https://openalex.org/W2023606539"],"abstract_inverted_index":{"AgroSeek":[0,52],"provides":[1],"an":[2],"easy-to-use":[3],"tool":[4],"for":[5,36],"environmental":[6],"metagenomic":[7,37],"analysis":[8],"and":[9,16,40,47],"comparison,":[10],"based":[11],"on":[12,24],"both":[13],"gene":[14],"annotations":[15],"associated":[17],"metadata,":[18],"with":[19],"this":[20],"initial":[21],"demonstration":[22],"focusing":[23],"control":[25],"of":[26],"antibiotic":[27],"resistance":[28],"in":[29,50],"agricultural":[30],"ecosystems.":[31],"Agroseek":[32],"creates":[33],"a":[34],"space":[35],"data":[38],"sharing":[39],"collaboration":[41],"to":[42],"assist":[43],"policy":[44],"makers,":[45],"stakeholders,":[46],"the":[48],"public":[49],"decision-making.":[51],"is":[53],"publicly-available":[54],"at":[55],"https://agroseek.cs.vt.edu/":[56],".":[57]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
