{"id":"https://openalex.org/W3017171220","doi":"https://doi.org/10.1186/s12859-021-03970-7","title":"stochprofML: stochastic profiling using maximum likelihood estimation in R","display_name":"stochprofML: stochastic profiling using maximum likelihood estimation in R","publication_year":2021,"publication_date":"2021-03-15","ids":{"openalex":"https://openalex.org/W3017171220","doi":"https://doi.org/10.1186/s12859-021-03970-7","mag":"3017171220","pmid":"https://pubmed.ncbi.nlm.nih.gov/33722188"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-03970-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-03970-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-03970-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-03970-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026183596","display_name":"Lisa Amrhein","orcid":"https://orcid.org/0000-0002-0370-624X"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lisa Amrhein","raw_affiliation_strings":["Department of Mathematics, Technical University Munich, Boltzmannstrasse 3, 85748, Garching, Germany","Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstrasse 1, 85764, Neuherberg, Germany","Department of Mathematics, Technical University Munich, Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technical University Munich, Boltzmannstrasse 3, 85748, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstrasse 1, 85764, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Department of Mathematics, Technical University Munich, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063476572","display_name":"Christiane Fuchs","orcid":"https://orcid.org/0000-0003-3565-8315"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I203082224","display_name":"Hochschule Bielefeld","ror":"https://ror.org/00edvg943","country_code":"DE","type":"education","lineage":["https://openalex.org/I203082224"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Munich","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christiane Fuchs","raw_affiliation_strings":["Department of Mathematics, Technical University Munich, Boltzmannstrasse 3, 85748, Garching, Germany. christiane.fuchs@uni-bielefeld.de","Faculty of Business Administration and Economics, Bielefeld University, Universit\u00e4tsstrasse 25, 33615, Bielefeld, Germany. christiane.fuchs@uni-bielefeld.de","Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstrasse 1, 85764, Neuherberg, Germany. christiane.fuchs@uni-bielefeld.de","Department of Mathematics, Technical University Munich, Garching, Germany","Faculty of Business Administration and Economics, Bielefeld University, Bielefeld, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3565-8315","affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technical University Munich, Boltzmannstrasse 3, 85748, Garching, Germany. christiane.fuchs@uni-bielefeld.de","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Faculty of Business Administration and Economics, Bielefeld University, Universit\u00e4tsstrasse 25, 33615, Bielefeld, Germany. christiane.fuchs@uni-bielefeld.de","institution_ids":["https://openalex.org/I20121455","https://openalex.org/I203082224"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstrasse 1, 85764, Neuherberg, Germany. christiane.fuchs@uni-bielefeld.de","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Department of Mathematics, Technical University Munich, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Faculty of Business Administration and Economics, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5063476572"],"corresponding_institution_ids":["https://openalex.org/I20121455","https://openalex.org/I203082224","https://openalex.org/I3018134672","https://openalex.org/I62916508"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00156347,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"1","first_page":"123","last_page":"123"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8374000191688538,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8374000191688538,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.09220000356435776,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.021700000390410423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/maximum-likelihood","display_name":"Maximum likelihood","score":0.6517423987388611},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6145480871200562},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.573774516582489},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5164728164672852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5076318979263306},{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.43953847885131836},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.4258444607257843},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3757706880569458},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3640866279602051},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.31127291917800903},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3056143522262573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20535534620285034},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1102658212184906}],"concepts":[{"id":"https://openalex.org/C49781872","wikidata":"https://www.wikidata.org/wiki/Q1045555","display_name":"Maximum likelihood","level":2,"score":0.6517423987388611},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6145480871200562},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.573774516582489},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5164728164672852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5076318979263306},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.43953847885131836},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.4258444607257843},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3757706880569458},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3640866279602051},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.31127291917800903},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3056143522262573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20535534620285034},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1102658212184906},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":14,"locations":[{"id":"doi:10.1186/s12859-021-03970-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-03970-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-03970-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33722188","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33722188","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:2004.08809","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2004.08809","pdf_url":"https://arxiv.org/pdf/2004.08809","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:push-zb.helmholtz-munich.de:61623","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-munich.de/frontdoor.php?source_opus=61623","pdf_url":"https://push-zb.helmholtz-munich.de/deliver.php?id=30254","source":{"id":"https://openalex.org/S7407055352","display_name":"PuSH - Publication Server of Helmholtz Zentrum M\u00fcnchen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 22:123 (2021)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7958472","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7958472","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"mag:3017171220","is_oa":true,"landing_page_url":"http://arxiv.org/pdf/2004.08809.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:doaj.org/article:eed19de341d54302bd08d395e04cfd34","is_oa":true,"landing_page_url":"https://doaj.org/article/eed19de341d54302bd08d395e04cfd34","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-31 (2021)","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1650512","is_oa":true,"landing_page_url":"https://mediatum.ub.tum.de/1650512","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1704567","is_oa":true,"landing_page_url":"https://mediatum.ub.tum.de/1704567","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:61623","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=61623","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 22:123 (2021)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2944735","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2944735","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"doi:10.48550/arxiv.2004.08809","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2004.08809","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"},{"id":"doi:10.6084/m9.figshare.c.5339790","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.5339790","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Collection"},{"id":"doi:10.6084/m9.figshare.c.5339790.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.5339790.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Collection"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-03970-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-03970-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-021-03970-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1241216728","display_name":null,"funder_award_id":"SFB 1243","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1258911125","display_name":null,"funder_award_id":"U01 CA215794","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G1401239261","display_name":null,"funder_award_id":"T32 GM145443","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1654136789","display_name":"Stochastische und statistische Modellierung von Biomarkern im Krankheitsverlauf von Brustkrebs","funder_award_id":"01DH17024","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4732230719","display_name":null,"funder_award_id":"U01-CA215794","funder_id":"https://openalex.org/F4320306080","funder_display_name":"Foundation for the National Institutes of Health"},{"id":"https://openalex.org/G7705551220","display_name":null,"funder_award_id":"Subproject A17","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320306080","display_name":"Foundation for the National Institutes of Health","ror":"https://ror.org/00k86s890"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320323389","display_name":"Universit\u00e4t Bielefeld","ror":"https://ror.org/02hpadn98"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3017171220.pdf","grobid_xml":"https://content.openalex.org/works/W3017171220.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1513618424","https://openalex.org/W1551258398","https://openalex.org/W1587026990","https://openalex.org/W1730150177","https://openalex.org/W1981641790","https://openalex.org/W1985987855","https://openalex.org/W1995086037","https://openalex.org/W2008697864","https://openalex.org/W2010653277","https://openalex.org/W2021429824","https://openalex.org/W2028426093","https://openalex.org/W2070583923","https://openalex.org/W2076687510","https://openalex.org/W2092033222","https://openalex.org/W2102969613","https://openalex.org/W2103442809","https://openalex.org/W2117637538","https://openalex.org/W2129631522","https://openalex.org/W2155388222","https://openalex.org/W2161643019","https://openalex.org/W2167090025","https://openalex.org/W2168175751","https://openalex.org/W2171074980","https://openalex.org/W2419143634","https://openalex.org/W2582743722","https://openalex.org/W2921330004","https://openalex.org/W2924537978","https://openalex.org/W2945282335","https://openalex.org/W2950843563","https://openalex.org/W2951890476","https://openalex.org/W2969900772","https://openalex.org/W3007707532","https://openalex.org/W3138513560","https://openalex.org/W4236700646","https://openalex.org/W4254687493","https://openalex.org/W6635399624"],"related_works":["https://openalex.org/W3141631981","https://openalex.org/W3125597896","https://openalex.org/W2281249772","https://openalex.org/W2120196508","https://openalex.org/W2985189918","https://openalex.org/W2064228409","https://openalex.org/W2950100546","https://openalex.org/W2953360069","https://openalex.org/W2000186700","https://openalex.org/W3173757326","https://openalex.org/W3209366111","https://openalex.org/W2604007704","https://openalex.org/W2004514718","https://openalex.org/W3092000818","https://openalex.org/W2158859322","https://openalex.org/W3125333685","https://openalex.org/W3080639007","https://openalex.org/W3190705831","https://openalex.org/W2278112683","https://openalex.org/W2963033551"],"abstract_inverted_index":{"BACKGROUND:":[0],"Tissues":[1],"are":[2],"often":[3],"heterogeneous":[4],"in":[5,32,67,88],"their":[6],"single-cell":[7],"molecular":[8],"expression,":[9],"and":[10,24,70,91,93,107],"this":[11],"can":[12],"govern":[13],"the":[14,20,39,45,53,64,79],"regulation":[15],"of":[16,22,56,60,82],"cell":[17,111],"fate.":[18],"For":[19],"understanding":[21],"development":[23],"disease,":[25],"it":[26],"is":[27],"important":[28],"to":[29,49],"quantify":[30],"heterogeneity":[31,51],"a":[33,86],"given":[34],"tissue.":[35],"RESULTS:":[36],"We":[37,62],"present":[38,71],"R":[40],"package":[41],"stochprofML":[42],"which":[43],"uses":[44],"maximum":[46],"likelihood":[47],"principle":[48],"parameterize":[50],"from":[52],"cumulative":[54],"expression":[55],"small":[57],"random":[58],"pools":[59],"cells.":[61],"evaluate":[63],"algorithm's":[65],"performance":[66],"simulation":[68],"studies":[69],"further":[72],"application":[73],"opportunities.":[74],"CONCLUSION:":[75],"Stochastic":[76],"profiling":[77],"outweighs":[78],"necessary":[80],"demixing":[81],"mixed":[83],"samples":[84],"with":[85],"saving":[87],"experimental":[89],"cost":[90],"effort":[92],"less":[94],"measurement":[95],"error.":[96],"It":[97],"offers":[98],"possibilities":[99],"for":[100],"parameterizing":[101],"heterogeneity,":[102],"estimating":[103],"underlying":[104],"pool":[105],"compositions":[106],"detecting":[108],"differences":[109],"between":[110,113],"populations":[112],"samples.":[114]},"counts_by_year":[],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2022-07-26T00:00:00"}
