{"id":"https://openalex.org/W3156419307","doi":"https://doi.org/10.1186/s12859-021-03962-7","title":"TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes","display_name":"TANTIGEN 2.0: a knowledge base of tumor T cell antigens and epitopes","publication_year":2021,"publication_date":"2021-04-01","ids":{"openalex":"https://openalex.org/W3156419307","doi":"https://doi.org/10.1186/s12859-021-03962-7","mag":"3156419307","pmid":"https://pubmed.ncbi.nlm.nih.gov/33849445"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-03962-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-03962-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-03962-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-03962-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049107377","display_name":"Guanglan Zhang","orcid":"https://orcid.org/0000-0001-6010-490X"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I92609107","display_name":"Metropolitan College of New York","ror":"https://ror.org/012saek46","country_code":"US","type":"education","lineage":["https://openalex.org/I92609107"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Guanglan Zhang","raw_affiliation_strings":["Metropolitan College, Boston University, Boston, USA. guanglan@bu.edu","Metropolitan College, Boston University, Boston, USA"],"raw_orcid":"https://orcid.org/0000-0001-6010-490X","affiliations":[{"raw_affiliation_string":"Metropolitan College, Boston University, Boston, USA. guanglan@bu.edu","institution_ids":["https://openalex.org/I111088046"]},{"raw_affiliation_string":"Metropolitan College, Boston University, Boston, USA","institution_ids":["https://openalex.org/I92609107","https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090707605","display_name":"Lou Chitkushev","orcid":"https://orcid.org/0000-0002-9365-8818"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I92609107","display_name":"Metropolitan College of New York","ror":"https://ror.org/012saek46","country_code":"US","type":"education","lineage":["https://openalex.org/I92609107"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lou Chitkushev","raw_affiliation_strings":["Metropolitan College, Boston University, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Metropolitan College, Boston University, Boston, USA","institution_ids":["https://openalex.org/I92609107","https://openalex.org/I111088046"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071073233","display_name":"Lars R\u00f8nn Olsen","orcid":"https://orcid.org/0000-0002-6725-7850"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Lars R\u00f8nn Olsen","raw_affiliation_strings":["Department of Health Technology, Technical University of Denmark, Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Technical University of Denmark, Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000801624","display_name":"Derin B. Keskin","orcid":"https://orcid.org/0000-0002-8496-6181"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derin B. Keskin","raw_affiliation_strings":["Dana-Farber Cancer Institute, Harvard Medical School, Boston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dana-Farber Cancer Institute, Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089063979","display_name":"Vladimir Brusi\u0107","orcid":"https://orcid.org/0000-0003-0523-5266"},"institutions":[{"id":"https://openalex.org/I13591777","display_name":"University of Nottingham Ningbo China","ror":"https://ror.org/03y4dt428","country_code":"CN","type":"education","lineage":["https://openalex.org/I13591777","https://openalex.org/I142263535"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Vladimir Brusic","raw_affiliation_strings":["School of Computer Science, University of Nottingham, Ningbo, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Nottingham, Ningbo, China","institution_ids":["https://openalex.org/I13591777"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5049107377"],"corresponding_institution_ids":["https://openalex.org/I111088046","https://openalex.org/I92609107"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.765,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.94430883,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"22","issue":"S8","first_page":"40","last_page":"40"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8662530183792114},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.7578622698783875},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.623204231262207},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5722033977508545},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4604630470275879},{"id":"https://openalex.org/keywords/tumor-antigen","display_name":"Tumor antigen","score":0.4462418258190155},{"id":"https://openalex.org/keywords/human-protein-atlas","display_name":"Human Protein Atlas","score":0.43513065576553345},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.3731847107410431},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.346818208694458},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2718043923377991},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2270834743976593},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.12832459807395935}],"concepts":[{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8662530183792114},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.7578622698783875},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.623204231262207},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5722033977508545},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4604630470275879},{"id":"https://openalex.org/C2776662205","wikidata":"https://www.wikidata.org/wiki/Q2459684","display_name":"Tumor antigen","level":4,"score":0.4462418258190155},{"id":"https://openalex.org/C158163496","wikidata":"https://www.wikidata.org/wiki/Q5937310","display_name":"Human Protein Atlas","level":4,"score":0.43513065576553345},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.3731847107410431},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.346818208694458},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2718043923377991},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2270834743976593},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.12832459807395935},{"id":"https://openalex.org/C6856738","wikidata":"https://www.wikidata.org/wiki/Q331672","display_name":"Protein expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000951","descriptor_name":"Antigens, Neoplasm","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006680","descriptor_name":"HLA Antigens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-021-03962-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-03962-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-03962-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33849445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33849445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.nottingham.ac.uk:65316","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402013","display_name":"Nottingham ePrints (University of Nottingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142263535","host_organization_name":"University of Nottingham","host_organization_lineage":["https://openalex.org/I142263535"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pure.atira.dk:publications/ce5aa5aa-cad9-4a16-bc71-bfe54b786e07","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/ce5aa5aa-cad9-4a16-bc71-bfe54b786e07","pdf_url":"https://backend.orbit.dtu.dk/ws/files/258642211/6168d0b0a3846f624c766cbd.pdf","source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Zhang , G , Chitkushev , L , Olsen , L R , Keskin , D B &amp; Brusic , V 2021 , ' TANTIGEN 2.0 : a knowledge base of tumor T cell antigens and epitopes ' , BMC Bioinformatics , vol. 22 , no. Suppl. 8 , 40 . https://doi.org/10.1186/s12859-021-03962-7","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:25aa7cc970f943c2830c8fa06e7f2d25","is_oa":true,"landing_page_url":"https://doaj.org/article/25aa7cc970f943c2830c8fa06e7f2d25","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss S8, Pp 1-8 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8045306","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8045306","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-03962-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-03962-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-03962-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2880513334","display_name":null,"funder_award_id":"SPORE-2P50CA101942-11A1","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5747960799","display_name":null,"funder_award_id":"R21 CA216772-01A1","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6726297955","display_name":null,"funder_award_id":"NCI-SPORE-2P50CA101942-11A1","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6913237741","display_name":null,"funder_award_id":"2P50CA101942-11A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8927039693","display_name":null,"funder_award_id":"R21 CA216772-01A1","funder_id":"https://openalex.org/F4320338333","funder_display_name":"Division of Cancer Epidemiology and Genetics, National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320338333","display_name":"Division of Cancer Epidemiology and Genetics, National Cancer Institute","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3156419307.pdf","grobid_xml":"https://content.openalex.org/works/W3156419307.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W31382826","https://openalex.org/W1917962573","https://openalex.org/W1978204300","https://openalex.org/W1989162387","https://openalex.org/W1989223689","https://openalex.org/W1992699637","https://openalex.org/W2012034410","https://openalex.org/W2053931156","https://openalex.org/W2099156986","https://openalex.org/W2101653483","https://openalex.org/W2105009956","https://openalex.org/W2107123894","https://openalex.org/W2119362018","https://openalex.org/W2121439483","https://openalex.org/W2124734101","https://openalex.org/W2158485828","https://openalex.org/W2160834915","https://openalex.org/W2173617309","https://openalex.org/W2397610672","https://openalex.org/W2560367415","https://openalex.org/W2589139221","https://openalex.org/W2592432144","https://openalex.org/W2613978126","https://openalex.org/W2724264513","https://openalex.org/W2728365508","https://openalex.org/W2749613778","https://openalex.org/W2772801349","https://openalex.org/W2806895459","https://openalex.org/W2867818201","https://openalex.org/W2900841241","https://openalex.org/W2904210127","https://openalex.org/W2904803926","https://openalex.org/W2971061706","https://openalex.org/W2982051675","https://openalex.org/W3004539692","https://openalex.org/W3021254998"],"related_works":["https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W2182598264","https://openalex.org/W203802859","https://openalex.org/W1999645791","https://openalex.org/W1969127249"],"abstract_inverted_index":{"We":[0,63],"previously":[1],"developed":[2],"TANTIGEN,":[3],"a":[4,67,114,129],"comprehensive":[5],"online":[6],"database":[7],"cataloging":[8],"more":[9,54],"than":[10,55],"1000":[11],"T":[12,57,93],"cell":[13,35,58,94],"epitopes":[14,36,59,95,124],"and":[15,37,40,53,60,96,121,125],"HLA":[16,38,61],"ligands":[17],"from":[18,48],"292":[19],"tumor":[20,41,51,70,82,97,119],"antigens.":[21,42,83],"In":[22],"TANTIGEN":[23,84,111],"2.0,":[24],"we":[25],"significantly":[26],"expanded":[27],"coverage":[28],"in":[29,76,81,102],"both":[30],"immune":[31],"response":[32],"targets":[33],"(T":[34],"ligands)":[39],"It":[43,127,146],"catalogs":[44],"4,296":[45],"antigen":[46,98],"variants":[47],"403":[49],"unique":[50],"antigens":[52,71,120],"1500":[56],"ligands.":[62],"also":[64],"included":[65],"neoantigens,":[66],"class":[68],"of":[69,131],"generated":[72],"through":[73],"mutations":[74],"resulting":[75],"new":[77],"amino":[78],"acid":[79],"sequences":[80,89],"2.0":[85,112],"contains":[86],"validated":[87],"TCR":[88],"specific":[90],"for":[91,118],"cognate":[92],"gene/mRNA/protein":[99],"expression":[100],"information":[101],"major":[103],"human":[104],"cancers":[105],"extracted":[106],"by":[107],"Human":[108],"Pathology":[109],"Atlas.":[110],"is":[113,147],"rich":[115],"data":[116,133,140],"resource":[117],"their":[122],"associated":[123],"neoepitopes.":[126],"hosts":[128],"set":[130],"tailored":[132],"analytics":[134],"tools":[135],"tightly":[136],"integrated":[137],"with":[138],"the":[139],"to":[141],"form":[142],"meaningful":[143],"analysis":[144],"workflows.":[145],"freely":[148],"available":[149],"at":[150],"http://projects.met-hilab.org/tadb":[151],".":[152]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
