{"id":"https://openalex.org/W3016144503","doi":"https://doi.org/10.1186/s12859-020-3477-y","title":"TarPan: an easily adaptable targeted sequencing panel viewer for research and clinical use","display_name":"TarPan: an easily adaptable targeted sequencing panel viewer for research and clinical use","publication_year":2020,"publication_date":"2020-04-15","ids":{"openalex":"https://openalex.org/W3016144503","doi":"https://doi.org/10.1186/s12859-020-3477-y","mag":"3016144503","pmid":"https://pubmed.ncbi.nlm.nih.gov/32293247"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-3477-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3477-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3477-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3477-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090728387","display_name":"Cody Ashby","orcid":"https://orcid.org/0000-0002-9361-0283"},"institutions":[{"id":"https://openalex.org/I2799656382","display_name":"University of Arkansas Medical Center","ror":"https://ror.org/005k4dn45","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799656382"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cody Ashby","raw_affiliation_strings":["Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA. tcashby@uams.edu","Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. tcashby@uams.edu","Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":"https://orcid.org/0000-0002-9361-0283","affiliations":[{"raw_affiliation_string":"Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA. tcashby@uams.edu","institution_ids":["https://openalex.org/I2799656382","https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. tcashby@uams.edu","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070764516","display_name":"Michael Rutherford","orcid":"https://orcid.org/0000-0003-2665-753X"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Rutherford","raw_affiliation_strings":["Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007618693","display_name":"Michael Bauer","orcid":"https://orcid.org/0000-0003-2498-7295"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A. Bauer","raw_affiliation_strings":["Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047990192","display_name":"Erich A. Peterson","orcid":"https://orcid.org/0000-0003-0925-7243"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erich A. Peterson","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100322620","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-1490-7450"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013925872","display_name":"Eileen M. Boyle","orcid":"https://orcid.org/0000-0001-8791-1744"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eileen M. Boyle","raw_affiliation_strings":["Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084133067","display_name":"Christopher P. Wardell","orcid":"https://orcid.org/0000-0002-9416-7818"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher P. Wardell","raw_affiliation_strings":["Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute: Myeloma Center, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042516164","display_name":"Brian A. Walker","orcid":"https://orcid.org/0000-0002-8615-6254"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian A. Walker","raw_affiliation_strings":["Division of Hematology Oncology, Indiana University, Indianapolis, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Hematology Oncology, Indiana University, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5090728387"],"corresponding_institution_ids":["https://openalex.org/I2799656382","https://openalex.org/I79620101"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.1414,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.36727141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"21","issue":"1","first_page":"144","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.7644000053405762,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.7644000053405762,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.07050000131130219,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.02160000056028366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4876915216445923},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4659254252910614},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44556936621665955},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39861446619033813},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3549320697784424},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27645012736320496},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23440834879875183},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07785055041313171}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4876915216445923},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4659254252910614},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44556936621665955},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39861446619033813},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3549320697784424},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27645012736320496},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23440834879875183},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07785055041313171},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008224","descriptor_name":"Lymphoma, Follicular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008224","descriptor_name":"Lymphoma, Follicular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008224","descriptor_name":"Lymphoma, Follicular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009101","descriptor_name":"Multiple Myeloma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009101","descriptor_name":"Multiple Myeloma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009101","descriptor_name":"Multiple Myeloma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018628","descriptor_name":"Gene Dosage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-3477-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3477-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3477-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32293247","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32293247","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7158102","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7158102","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:fc9f9a214b9e440f9abe6c0ab4b3f1a4","is_oa":true,"landing_page_url":"https://doaj.org/article/fc9f9a214b9e440f9abe6c0ab4b3f1a4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-12 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-3477-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3477-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3477-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3016144503.pdf","grobid_xml":"https://content.openalex.org/works/W3016144503.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W84886273","https://openalex.org/W1934039027","https://openalex.org/W2110014529","https://openalex.org/W2117131162","https://openalex.org/W2146290346","https://openalex.org/W2152710395","https://openalex.org/W2235737683","https://openalex.org/W2323265677","https://openalex.org/W2332315774","https://openalex.org/W2337209831","https://openalex.org/W2342249984","https://openalex.org/W2411835530","https://openalex.org/W2417483443","https://openalex.org/W2461798448","https://openalex.org/W2618857260","https://openalex.org/W2765435739","https://openalex.org/W2805293188","https://openalex.org/W2809698015","https://openalex.org/W2912546947","https://openalex.org/W2942339275","https://openalex.org/W2949338304","https://openalex.org/W4376597580","https://openalex.org/W6634682946"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,140],"study":[2],"of":[3,11,63,77,101,221,249],"cancer":[4,25,138,222],"genomics":[5],"continually":[6],"matures":[7],"as":[8,262,271],"the":[9,44,60,78,89,116,162,167,191,252],"number":[10,131],"patient":[12],"samples":[13],"sequenced":[14],"increases.":[15],"As":[16],"more":[17,243],"data":[18,109,113,196],"is":[19,154,215],"generated,":[20],"oncogenic":[21],"drivers":[22],"for":[23],"specific":[24],"types":[26],"are":[27],"discovered":[28],"along":[29],"with":[30,146,239,256],"their":[31],"associated":[32],"risks.":[33],"This":[34],"in":[35,137,143,161,200,231,251,254,268],"turn":[36],"leads":[37],"to":[38,46,58,97,211,218],"potential":[39],"treatment":[40],"strategies":[41],"that":[42,214,279],"pave":[43],"way":[45],"precision":[47],"medicine.":[48],"However,":[49],"significant":[50],"financial":[51],"and":[52,134,151,180,189,194,225],"analytical":[53],"barriers":[54],"make":[55],"it":[56,246],"infeasible":[57],"sequence":[59],"entire":[61],"genome":[62,79],"every":[64],"patient.":[65],"In":[66,184],"contrast,":[67],"targeted":[68,111,223,244,259],"sequencing":[69,112,241,260],"panels":[70],"give":[71],"reliable":[72],"information":[73,117],"on":[74,173],"relevant":[75],"portions":[76],"at":[80],"a":[81,94,119,147,208,232,263],"fiscally":[82],"responsible":[83],"cost.":[84],"Therefore,":[85],"we":[86,165,186,237],"have":[87,187,206],"created":[88],"Targeted":[90],"Panel":[91],"(TarPan)":[92],"Viewer,":[93],"software":[95],"tool,":[96],"investigate":[98],"this":[99,124,195],"type":[100,220],"data.":[102,183],"RESULTS:":[103],"TarPan":[104,171],"Viewer":[105,172],"helps":[106],"investigators":[107,126],"understand":[108],"from":[110,156,169],"by":[114],"displaying":[115],"through":[118],"web":[120],"browser":[121],"interface.":[122],"Through":[123],"interface,":[125],"can":[127],"easily":[128,216],"observe":[129],"copy":[130],"changes,":[132],"mutations,":[133],"structural":[135],"events":[136],"samples.":[139],"viewer":[141,192,213],"runs":[142],"R":[144],"Shiny":[145],"robust":[148],"SQLite":[149],"backend":[150],"its":[152,229],"input":[153],"generated":[155],"bioinformatic":[157],"algorithms":[158],"reliably":[159],"described":[160],"literature.":[163],"Here":[164],"show":[166],"results":[168],"using":[170],"publicly":[174],"available":[175],"follicular":[176],"lymphoma,":[177],"breast":[178],"cancer,":[179],"multiple":[181],"myeloma":[182],"addition,":[185],"tested":[188],"utilized":[190],"internally,":[193],"has":[197,226],"been":[198],"used":[199],"high-impact":[201],"peer-reviewed":[202],"publications.":[203],"CONCLUSIONS:":[204],"We":[205],"designed":[207],"flexible,":[209],"simple":[210],"setup":[212],"adaptable":[217],"any":[219],"sequencing,":[224],"already":[227],"proven":[228],"use":[230,250],"research":[233],"laboratory":[234],"environment.":[235],"Further,":[236],"believe":[238],"deeper":[240],"and/or":[242],"application":[245],"could":[247],"be":[248],"clinic":[253],"conjunction":[255],"an":[257],"appropriate":[258],"panel":[261],"cost-effective":[264],"diagnostic":[265],"test,":[266],"especially":[267],"cancers":[269],"such":[270],"acute":[272],"leukemia":[273],"or":[274],"diffuse":[275],"large":[276],"B-cell":[277],"lymphoma":[278],"require":[280],"rapid":[281],"interventions.":[282]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
