{"id":"https://openalex.org/W2954817568","doi":"https://doi.org/10.1186/s12859-020-3404-2","title":"IPCO: Inference of Pathways from Co-variance analysis","display_name":"IPCO: Inference of Pathways from Co-variance analysis","publication_year":2020,"publication_date":"2020-02-18","ids":{"openalex":"https://openalex.org/W2954817568","doi":"https://doi.org/10.1186/s12859-020-3404-2","mag":"2954817568","pmid":"https://pubmed.ncbi.nlm.nih.gov/32070271"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-3404-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3404-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3404-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3404-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008256897","display_name":"Mrinmoy Das","orcid":"https://orcid.org/0000-0003-4878-0483"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I4210141138","display_name":"APC Microbiome Institute","ror":"https://ror.org/03f2ct267","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210141138"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Mrinmoy Das","raw_affiliation_strings":["APC Microbiome Ireland, University College Cork, Cork, Ireland","School of Microbiology, University College Cork, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I4210141138","https://openalex.org/I27577105"]},{"raw_affiliation_string":"School of Microbiology, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064922328","display_name":"Tarini Shankar Ghosh","orcid":"https://orcid.org/0000-0001-9570-0365"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I4210141138","display_name":"APC Microbiome Institute","ror":"https://ror.org/03f2ct267","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210141138"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Tarini Shankar Ghosh","raw_affiliation_strings":["APC Microbiome Ireland, University College Cork, Cork, Ireland","School of Microbiology, University College Cork, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I4210141138","https://openalex.org/I27577105"]},{"raw_affiliation_string":"School of Microbiology, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009977791","display_name":"Ian B. Jeffery","orcid":"https://orcid.org/0000-0001-9183-7292"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]},{"id":"https://openalex.org/I4210141138","display_name":"APC Microbiome Institute","ror":"https://ror.org/03f2ct267","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210141138"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Ian B. Jeffery","raw_affiliation_strings":["APC Microbiome Ireland, University College Cork, Cork, Ireland. i.jeffery@ucc.ie","School of Microbiology, University College Cork, Cork, Ireland. i.jeffery@ucc.ie","APC Microbiome Ireland, University College Cork, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"APC Microbiome Ireland, University College Cork, Cork, Ireland. i.jeffery@ucc.ie","institution_ids":["https://openalex.org/I4210141138"]},{"raw_affiliation_string":"School of Microbiology, University College Cork, Cork, Ireland. i.jeffery@ucc.ie","institution_ids":["https://openalex.org/I27577105"]},{"raw_affiliation_string":"APC Microbiome Ireland, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I4210141138","https://openalex.org/I27577105"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5008256897"],"corresponding_institution_ids":["https://openalex.org/I27577105","https://openalex.org/I4210141138"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3338,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.55773414,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"62","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9606000185012817,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.6228109002113342},{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.5822036266326904},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5813652873039246},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5112438201904297},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5030681490898132},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.48496294021606445},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4523155093193054},{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.4229377508163452},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.42126163840293884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4185943305492401},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35207754373550415},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3490740656852722},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31638678908348083},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3136071562767029},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12755334377288818},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.0983143150806427},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.09494563937187195},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08182433247566223}],"concepts":[{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6228109002113342},{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.5822036266326904},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5813652873039246},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5112438201904297},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5030681490898132},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.48496294021606445},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4523155093193054},{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.4229377508163452},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.42126163840293884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4185943305492401},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35207754373550415},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3490740656852722},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31638678908348083},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3136071562767029},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12755334377288818},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0983143150806427},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.09494563937187195},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08182433247566223},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000704","descriptor_name":"Analysis of Variance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000704","descriptor_name":"Analysis of Variance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000704","descriptor_name":"Analysis of Variance","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-3404-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3404-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3404-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32070271","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32070271","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:439ed3d8ef504e32b43c731cde39840f","is_oa":true,"landing_page_url":"https://doaj.org/article/439ed3d8ef504e32b43c731cde39840f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-15 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7029613","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7029613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-3404-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3404-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3404-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5335859279","display_name":null,"funder_award_id":"13/SIRG/2128","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2954817568.pdf","grobid_xml":"https://content.openalex.org/works/W2954817568.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1587026990","https://openalex.org/W1847253990","https://openalex.org/W1972221753","https://openalex.org/W1988925586","https://openalex.org/W2008033604","https://openalex.org/W2076616438","https://openalex.org/W2088170171","https://openalex.org/W2102746137","https://openalex.org/W2108718991","https://openalex.org/W2110082875","https://openalex.org/W2110300022","https://openalex.org/W2122512858","https://openalex.org/W2128769815","https://openalex.org/W2130517250","https://openalex.org/W2130725058","https://openalex.org/W2131271579","https://openalex.org/W2131415145","https://openalex.org/W2151350595","https://openalex.org/W2159482845","https://openalex.org/W2165384723","https://openalex.org/W2260059978","https://openalex.org/W2340748026","https://openalex.org/W2555180552","https://openalex.org/W2582743722","https://openalex.org/W2736665789","https://openalex.org/W2794489850","https://openalex.org/W2807059208","https://openalex.org/W2897611961","https://openalex.org/W2904250115","https://openalex.org/W2951383526","https://openalex.org/W2952200190","https://openalex.org/W2953817430","https://openalex.org/W4230096730","https://openalex.org/W4232900961","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W4254851101","https://openalex.org/W3171007296","https://openalex.org/W22115721","https://openalex.org/W2211931904","https://openalex.org/W2321234655","https://openalex.org/W2065444835","https://openalex.org/W2470062578","https://openalex.org/W2952773340","https://openalex.org/W2981861370","https://openalex.org/W2369319632"],"abstract_inverted_index":{"IPCO":[0,12],"can":[1],"infer":[2],"functionality":[3],"from":[4,19],"16S":[5],"datasets":[6],"and":[7,17],"significantly":[8],"outperforms":[9],"existing":[10],"tools.":[11],"is":[13],"implemented":[14],"in":[15],"R":[16],"available":[18],"https://github.com/IPCO-Rlibrary/IPCO.":[20]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
