{"id":"https://openalex.org/W3008945633","doi":"https://doi.org/10.1186/s12859-020-3371-7","title":"PANEV: an R package for a pathway-based network visualization","display_name":"PANEV: an R package for a pathway-based network visualization","publication_year":2020,"publication_date":"2020-02-06","ids":{"openalex":"https://openalex.org/W3008945633","doi":"https://doi.org/10.1186/s12859-020-3371-7","mag":"3008945633","pmid":"https://pubmed.ncbi.nlm.nih.gov/32028885"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-3371-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3371-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3371-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3371-7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004213108","display_name":"Valentino Palombo","orcid":"https://orcid.org/0000-0003-3590-2963"},"institutions":[{"id":"https://openalex.org/I129627893","display_name":"University of Molise","ror":"https://ror.org/04z08z627","country_code":"IT","type":"education","lineage":["https://openalex.org/I129627893"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valentino Palombo","raw_affiliation_strings":["Dipartimento Agricoltura, Ambiente e Alimenti, Universit\u00e0 degli Studi del Molise, 86100, Campobasso, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento Agricoltura, Ambiente e Alimenti, Universit\u00e0 degli Studi del Molise, 86100, Campobasso, Italy","institution_ids":["https://openalex.org/I129627893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070014423","display_name":"Marco Milanesi","orcid":"https://orcid.org/0000-0001-6244-7455"},"institutions":[{"id":"https://openalex.org/I103320735","display_name":"Universit\u00e0 Cattolica del Sacro Cuore","ror":"https://ror.org/03h7r5v07","country_code":"IT","type":"education","lineage":["https://openalex.org/I103320735"]},{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR","IT"],"is_corresponding":false,"raw_author_name":"Marco Milanesi","raw_affiliation_strings":["Department of Support, Production and Animal Health, School of Veterinary Medicine, S\u00e3o Paulo State University, Ara\u00e7atuba, S\u00e3o Paulo, 16050-680, Brazil","Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Support, Production and Animal Health, School of Veterinary Medicine, S\u00e3o Paulo State University, Ara\u00e7atuba, S\u00e3o Paulo, 16050-680, Brazil","institution_ids":["https://openalex.org/I879563668"]},{"raw_affiliation_string":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy","institution_ids":["https://openalex.org/I103320735"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083540134","display_name":"Gabriella Sferra","orcid":"https://orcid.org/0000-0001-6721-8547"},"institutions":[{"id":"https://openalex.org/I129627893","display_name":"University of Molise","ror":"https://ror.org/04z08z627","country_code":"IT","type":"education","lineage":["https://openalex.org/I129627893"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gabriella Sferra","raw_affiliation_strings":["Dipartimento di Bioscienze e Territorio, Universit\u00e0 degli Studi del Molise, 86090, Pesche, IS, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze e Territorio, Universit\u00e0 degli Studi del Molise, 86090, Pesche, IS, Italy","institution_ids":["https://openalex.org/I129627893"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085984321","display_name":"Stefano Capomaccio","orcid":"https://orcid.org/0000-0002-0004-9272"},"institutions":[{"id":"https://openalex.org/I103320735","display_name":"Universit\u00e0 Cattolica del Sacro Cuore","ror":"https://ror.org/03h7r5v07","country_code":"IT","type":"education","lineage":["https://openalex.org/I103320735"]},{"id":"https://openalex.org/I27483092","display_name":"University of Perugia","ror":"https://ror.org/00x27da85","country_code":"IT","type":"education","lineage":["https://openalex.org/I27483092"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Capomaccio","raw_affiliation_strings":["Dipartimento di Medicina Veterinaria, Universit\u00e0 di Perugia, 06126, Perugia, Italy","Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Medicina Veterinaria, Universit\u00e0 di Perugia, 06126, Perugia, Italy","institution_ids":["https://openalex.org/I27483092"]},{"raw_affiliation_string":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy","institution_ids":["https://openalex.org/I103320735"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031001206","display_name":"Sandy Sgorlon","orcid":"https://orcid.org/0000-0001-9247-6441"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sandy Sgorlon","raw_affiliation_strings":["Dipartimento di Scienze Agrarie ed Ambientali, Universit\u00e0 degli Studi di Udine, 33100, Udine, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Agrarie ed Ambientali, Universit\u00e0 degli Studi di Udine, 33100, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082038801","display_name":"Mariasilvia D\u2019Andrea","orcid":"https://orcid.org/0000-0002-8932-4057"},"institutions":[{"id":"https://openalex.org/I129627893","display_name":"University of Molise","ror":"https://ror.org/04z08z627","country_code":"IT","type":"education","lineage":["https://openalex.org/I129627893"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Mariasilvia D\u2019Andrea","raw_affiliation_strings":["Dipartimento Agricoltura, Ambiente e Alimenti, Universit\u00e0 degli Studi del Molise, 86100, Campobasso, Italy"],"raw_orcid":"https://orcid.org/0000-0002-8932-4057","affiliations":[{"raw_affiliation_string":"Dipartimento Agricoltura, Ambiente e Alimenti, Universit\u00e0 degli Studi del Molise, 86100, Campobasso, Italy","institution_ids":["https://openalex.org/I129627893"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082038801"],"corresponding_institution_ids":["https://openalex.org/I129627893"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.715,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.8455966,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"46","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7528436183929443},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.7185091376304626},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.710088312625885},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6060584187507629},{"id":"https://openalex.org/keywords/downstream","display_name":"Downstream (manufacturing)","score":0.5353707671165466},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5216834545135498},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4822574257850647},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.4661978781223297},{"id":"https://openalex.org/keywords/upstream","display_name":"Upstream (networking)","score":0.44365009665489197},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.42967987060546875},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.39987435936927795},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35970890522003174},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31424349546432495},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31303760409355164},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1737578809261322},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08988142013549805},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.0787229835987091}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7528436183929443},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.7185091376304626},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.710088312625885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6060584187507629},{"id":"https://openalex.org/C2776207758","wikidata":"https://www.wikidata.org/wiki/Q5303302","display_name":"Downstream (manufacturing)","level":2,"score":0.5353707671165466},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5216834545135498},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4822574257850647},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.4661978781223297},{"id":"https://openalex.org/C191172861","wikidata":"https://www.wikidata.org/wiki/Q7899321","display_name":"Upstream (networking)","level":2,"score":0.44365009665489197},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.42967987060546875},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.39987435936927795},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35970890522003174},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31424349546432495},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31303760409355164},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1737578809261322},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08988142013549805},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0787229835987091},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-020-3371-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3371-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3371-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32028885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32028885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:air.uniud.it:11390/1174609","is_oa":true,"landing_page_url":"http://hdl.handle.net/11390/1174609","pdf_url":null,"source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:1d71712395864e6bbe2c31658ff04601","is_oa":false,"landing_page_url":"https://doaj.org/article/1d71712395864e6bbe2c31658ff04601","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-7 (2020)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5962387","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7006390","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repositorio.unesp.br:11449/196569","is_oa":true,"landing_page_url":"http://hdl.handle.net/11449/196569","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:UNESP","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-3371-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3371-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3371-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1457613600","display_name":null,"funder_award_id":"2016/05787\u20107","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3008945633.pdf","grobid_xml":"https://content.openalex.org/works/W3008945633.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1521026317","https://openalex.org/W1812633676","https://openalex.org/W1974944535","https://openalex.org/W1978361373","https://openalex.org/W1985695385","https://openalex.org/W1998902445","https://openalex.org/W2022179977","https://openalex.org/W2024286178","https://openalex.org/W2045949302","https://openalex.org/W2050559302","https://openalex.org/W2057196186","https://openalex.org/W2067534155","https://openalex.org/W2076079679","https://openalex.org/W2080010210","https://openalex.org/W2094397891","https://openalex.org/W2097374264","https://openalex.org/W2097903116","https://openalex.org/W2100980426","https://openalex.org/W2103017472","https://openalex.org/W2133465414","https://openalex.org/W2135230352","https://openalex.org/W2141224543","https://openalex.org/W2142060886","https://openalex.org/W2149659037","https://openalex.org/W2157884365","https://openalex.org/W2166574880","https://openalex.org/W2167119716","https://openalex.org/W2171437346","https://openalex.org/W2172557341","https://openalex.org/W2463778234","https://openalex.org/W2559588208","https://openalex.org/W2573477940","https://openalex.org/W2795548516","https://openalex.org/W2800340189","https://openalex.org/W2883562787","https://openalex.org/W2886907366","https://openalex.org/W2890491248","https://openalex.org/W2903104110","https://openalex.org/W2950595506","https://openalex.org/W4247937483"],"related_works":["https://openalex.org/W3113528484","https://openalex.org/W2241146542","https://openalex.org/W3124058258","https://openalex.org/W2209220924","https://openalex.org/W4214653257","https://openalex.org/W1499733765","https://openalex.org/W3125376000","https://openalex.org/W2031986320","https://openalex.org/W4362671650","https://openalex.org/W2117453324"],"abstract_inverted_index":{"BACKGROUND:":[0],"During":[1],"the":[2,6,10,40,56,66,144,150,154,165],"last":[3],"decade,":[4],"with":[5],"aim":[7],"to":[8,25,54,101,114,134,142],"solve":[9],"challenge":[11],"of":[12,20,42,45,49,96,103,118,121,146,156],"post-genomic":[13],"and":[14,28,59,106,130,153,159],"transcriptomic":[15,138],"data":[16],"mining,":[17],"a":[18,35,43,94,119],"plethora":[19],"tools":[21],"have":[22],"been":[23],"developed":[24],"create,":[26],"edit":[27],"analyze":[29,135],"metabolic":[30],"pathways.":[31,108],"In":[32],"particular,":[33],"when":[34],"complex":[36],"phenomenon":[37],"is":[38,75,132,169],"considered,":[39],"creation":[41],"network":[44,82,95,110],"multiple":[46,97],"interconnected":[47,104,157],"pathways":[48,161],"interest":[50],"could":[51],"be":[52],"useful":[53],"investigate":[55],"underlying":[57],"biology":[58],"ultimately":[60],"identify":[61],"functional":[62,116],"candidate":[63,147],"genes":[64,92],"affecting":[65],"trait":[67],"under":[68],"investigation.":[69,166],"RESULTS:":[70],"PANEV":[71],"(PAthway":[72],"NEtwork":[73],"Visualizer)":[74],"an":[76],"R":[77],"package":[78,168],"set":[79],"for":[80,164],"gene/pathway-based":[81],"visualization.":[83],"Based":[84],"on":[85,88],"information":[86],"available":[87,170],"KEGG,":[89],"it":[90,131],"visualizes":[91],"within":[93],"levels":[98],"(from":[99],"1":[100],"n)":[102],"upstream":[105,160],"downstream":[107,158],"The":[109,124,167],"graph":[111],"visualization":[112],"helps":[113],"interpret":[115],"profiles":[117],"cluster":[120],"genes.":[122],"CONCLUSIONS:":[123],"suite":[125],"has":[126],"no":[127],"species":[128],"constraints":[129],"ready":[133],"genomic":[136],"or":[137],"outcomes.":[139],"Users":[140],"need":[141],"supply":[143],"list":[145],"genes,":[148],"specify":[149],"target":[151],"pathway(s)":[152],"number":[155],"(levels)":[162],"required":[163],"at":[171],"https://github.com/vpalombo/PANEV.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":15}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
