{"id":"https://openalex.org/W3011374651","doi":"https://doi.org/10.1186/s12859-020-3356-6","title":"Robust pathway sampling in phenotype prediction. Application to triple negative breast cancer","display_name":"Robust pathway sampling in phenotype prediction. Application to triple negative breast cancer","publication_year":2020,"publication_date":"2020-03-01","ids":{"openalex":"https://openalex.org/W3011374651","doi":"https://doi.org/10.1186/s12859-020-3356-6","mag":"3011374651","pmid":"https://pubmed.ncbi.nlm.nih.gov/32164540"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-3356-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3356-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3356-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3356-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029379910","display_name":"Ana Cernea","orcid":"https://orcid.org/0000-0001-8890-6429"},"institutions":[{"id":"https://openalex.org/I165339363","display_name":"Universidad de Oviedo","ror":"https://ror.org/006gksa02","country_code":"ES","type":"education","lineage":["https://openalex.org/I165339363"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana Cernea","raw_affiliation_strings":["Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052785126","display_name":"Juan Luis Fern\u00e1ndez\u2010Mart\u00ednez","orcid":"https://orcid.org/0000-0002-4758-2832"},"institutions":[{"id":"https://openalex.org/I165339363","display_name":"Universidad de Oviedo","ror":"https://ror.org/006gksa02","country_code":"ES","type":"education","lineage":["https://openalex.org/I165339363"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Juan Luis Fern\u00e1ndez-Mart\u00ednez","raw_affiliation_strings":["Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain. jlfm@uniovi.es","Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain. jlfm@uniovi.es","institution_ids":["https://openalex.org/I165339363"]},{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045300723","display_name":"Enrique J. deAndr\u00e9s\u2010Galiana","orcid":"https://orcid.org/0000-0001-8555-3832"},"institutions":[{"id":"https://openalex.org/I165339363","display_name":"Universidad de Oviedo","ror":"https://ror.org/006gksa02","country_code":"ES","type":"education","lineage":["https://openalex.org/I165339363"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Enrique J. deAndr\u00e9s-Galiana","raw_affiliation_strings":["Department of Informatics and Computer Science, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics and Computer Science, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]},{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074000455","display_name":"Francisco Javier Fern\u00e1ndez-Ovies","orcid":null},"institutions":[{"id":"https://openalex.org/I165339363","display_name":"Universidad de Oviedo","ror":"https://ror.org/006gksa02","country_code":"ES","type":"education","lineage":["https://openalex.org/I165339363"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Francisco Javier Fern\u00e1ndez-Ovies","raw_affiliation_strings":["Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016770781","display_name":"\u00d3scar \u00c1lvarez-Machancoses","orcid":"https://orcid.org/0000-0002-2244-5161"},"institutions":[{"id":"https://openalex.org/I165339363","display_name":"Universidad de Oviedo","ror":"https://ror.org/006gksa02","country_code":"ES","type":"education","lineage":["https://openalex.org/I165339363"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oscar Alvarez-Machancoses","raw_affiliation_strings":["Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037565392","display_name":"Zulima Fern\u00e1ndez\u2010Mu\u00f1iz","orcid":"https://orcid.org/0000-0002-6963-7507"},"institutions":[{"id":"https://openalex.org/I165339363","display_name":"Universidad de Oviedo","ror":"https://ror.org/006gksa02","country_code":"ES","type":"education","lineage":["https://openalex.org/I165339363"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Zulima Fern\u00e1ndez-Mu\u00f1iz","raw_affiliation_strings":["Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Group of Inverse Problems, Optimization and Machine Learning, Department of Mathematics, University of Oviedo, C/ Federico Garc\u00eda-Lorca, 18, 33007, Oviedo, Spain","institution_ids":["https://openalex.org/I165339363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060529826","display_name":"Leorey N. Saligan","orcid":"https://orcid.org/0000-0001-9481-7836"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210110704","display_name":"National Institute of Nursing Research","ror":"https://ror.org/01y3zfr79","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210110704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leorey N. Saligan","raw_affiliation_strings":["National Institutes of Health, National Institute of Nursing Research, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institutes of Health, National Institute of Nursing Research, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210110704","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028274750","display_name":"Stephen T. Sonis","orcid":"https://orcid.org/0000-0001-6480-2625"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]},{"id":"https://openalex.org/I4210161994","display_name":"Dana-Farber Brigham Cancer Center","ror":"https://ror.org/05rgrbr06","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I4210117453","https://openalex.org/I4210161994","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen T. Sonis","raw_affiliation_strings":["Brigham and Women's Hospital and the Dana-Farber Cancer Institute, Boston, MA, USA","Primary Endpoint Solutions, Watertown, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Brigham and Women's Hospital and the Dana-Farber Cancer Institute, Boston, MA, USA","institution_ids":["https://openalex.org/I4210161994","https://openalex.org/I1283280774","https://openalex.org/I4210117453"]},{"raw_affiliation_string":"Primary Endpoint Solutions, Watertown, MA, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5052785126"],"corresponding_institution_ids":["https://openalex.org/I165339363"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.667,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.6675232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"S2","first_page":"89","last_page":"89"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3456999957561493,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3456999957561493,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.19539999961853027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11303","display_name":"Bayesian Modeling and Causal Inference","score":0.1762000024318695,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/triple-negative-breast-cancer","display_name":"Triple-negative breast cancer","score":0.7109341025352478},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6497313976287842},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.55023592710495},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.48942795395851135},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48173072934150696},{"id":"https://openalex.org/keywords/triple-negative","display_name":"Triple negative","score":0.4509706497192383},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.43449410796165466},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4035540223121643},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3621411919593811},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.34730297327041626},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3461682200431824},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32230788469314575},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28065162897109985},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2610379457473755},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20671477913856506},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.20544546842575073}],"concepts":[{"id":"https://openalex.org/C2780110267","wikidata":"https://www.wikidata.org/wiki/Q7843332","display_name":"Triple-negative breast cancer","level":4,"score":0.7109341025352478},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6497313976287842},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.55023592710495},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.48942795395851135},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48173072934150696},{"id":"https://openalex.org/C2992734768","wikidata":"https://www.wikidata.org/wiki/Q48964","display_name":"Triple negative","level":4,"score":0.4509706497192383},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.43449410796165466},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4035540223121643},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3621411919593811},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.34730297327041626},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3461682200431824},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32230788469314575},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28065162897109985},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2610379457473755},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20671477913856506},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.20544546842575073},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009362","descriptor_name":"Neoplasm Metastasis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009362","descriptor_name":"Neoplasm Metastasis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009362","descriptor_name":"Neoplasm Metastasis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016019","descriptor_name":"Survival Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000401","qualifier_name":"mortality","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D064726","descriptor_name":"Triple Negative Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-3356-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3356-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3356-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32164540","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32164540","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digibuo.uniovi.es:10651/55407","is_oa":true,"landing_page_url":"http://hdl.handle.net/10651/55407","pdf_url":null,"source":{"id":"https://openalex.org/S4306402334","display_name":"Consultation of the Doctoral Thesis Database (TESEO) (Ministerio de Educaci\u00f3n, Cultura y Deporte)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801976130","host_organization_name":"Ministerio de Educaci\u00f3n Cultura y Deporte","host_organization_lineage":["https://openalex.org/I2801976130"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:a8d72fd16e714abc9845facceb2a2eea","is_oa":true,"landing_page_url":"https://doaj.org/article/a8d72fd16e714abc9845facceb2a2eea","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S2, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7068866","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7068866","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-3356-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-3356-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-3356-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7599999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308347","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94"},{"id":"https://openalex.org/F4320337353","display_name":"National Institute of Nursing Research","ror":"https://ror.org/01y3zfr79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3011374651.pdf","grobid_xml":"https://content.openalex.org/works/W3011374651.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1511986666","https://openalex.org/W1983823750","https://openalex.org/W1991598381","https://openalex.org/W1995945562","https://openalex.org/W2010069724","https://openalex.org/W2016455323","https://openalex.org/W2027381054","https://openalex.org/W2032308031","https://openalex.org/W2035315325","https://openalex.org/W2080918380","https://openalex.org/W2083246944","https://openalex.org/W2090275343","https://openalex.org/W2100444908","https://openalex.org/W2105133921","https://openalex.org/W2112706081","https://openalex.org/W2116064335","https://openalex.org/W2135046866","https://openalex.org/W2148103594","https://openalex.org/W2409555855","https://openalex.org/W2484153876","https://openalex.org/W2486837196","https://openalex.org/W2501185713","https://openalex.org/W2537013382","https://openalex.org/W2566145947","https://openalex.org/W2605548938","https://openalex.org/W2680364857","https://openalex.org/W2770215174","https://openalex.org/W2770763418","https://openalex.org/W2794620511","https://openalex.org/W2794788112","https://openalex.org/W2795294530","https://openalex.org/W2805511540","https://openalex.org/W2904747692","https://openalex.org/W2906734731","https://openalex.org/W3106889297","https://openalex.org/W4240752029"],"related_works":["https://openalex.org/W2064898491","https://openalex.org/W2592049401","https://openalex.org/W2387231244","https://openalex.org/W2117189145","https://openalex.org/W3203000403","https://openalex.org/W3151231688","https://openalex.org/W4250415846","https://openalex.org/W2254963647","https://openalex.org/W2356671061","https://openalex.org/W4390540917"],"abstract_inverted_index":{"BACKGROUND:":[0],"Phenotype":[1],"prediction":[2,64,209],"problems":[3],"are":[4,104,113,148,156,192],"usually":[5],"considered":[6],"ill-posed,":[7],"as":[8,67],"the":[9,19,26,29,35,59,68,72,76,84,107,165,171,178,182,195,204,212,216,223,226,231],"amount":[10],"of":[11,28,38,86,95,167,177,215,225],"samples":[12],"is":[13,219],"very":[14],"limited":[15],"with":[16],"respect":[17],"to":[18,34,54,83,115,151,198,201],"scrutinized":[20],"genetic":[21,31,41,87],"probes.":[22],"This":[23],"fact":[24],"complicates":[25],"sampling":[27,51,179],"defective":[30,60],"pathways":[32,61,88,103,173,232],"due":[33],"high":[36],"number":[37],"possible":[39],"discriminatory":[40],"networks":[42,197],"involved.":[43],"In":[44],"this":[45,162],"research,":[46],"we":[47],"outline":[48],"three":[49,145],"novel":[50],"algorithms":[52],"utilized":[53],"identify,":[55],"classify":[56],"and":[57,75,79,93,112,126,132,181,222],"characterize":[58],"in":[62,90,194,207],"phenotype":[63,208],"problems,":[65,210],"such":[66],"Fisher's":[69,124],"ratio":[70,125],"sampler,":[71,78],"Holdout":[73,127],"sampler":[74],"Random":[77],"apply":[80],"each":[81],"one":[82],"analysis":[85,163],"involved":[89],"tumor":[91],"behavior":[92],"outcomes":[94],"triple":[96],"negative":[97],"breast":[98],"cancers":[99],"(TNBC).":[100],"Altered":[101],"biological":[102],"identified":[105],"using":[106],"most":[108],"frequently":[109],"sampled":[110],"genes":[111],"compared":[114],"those":[116],"obtained":[117],"via":[118],"Bayesian":[119,152,196],"Networks":[120,153],"(BNs).":[121],"RESULTS:":[122],"Random,":[123],"samplers":[128,146],"were":[129],"more":[130],"accurate":[131],"robust":[133],"than":[134],"BNs,":[135],"while":[136],"providing":[137],"comparable":[138],"insights":[139],"about":[140],"disease":[141],"genomics.":[142],"CONCLUSIONS:":[143],"The":[144],"tested":[147],"good":[149],"alternatives":[150],"since":[154,170,211],"they":[155],"less":[157],"computationally":[158],"demanding":[159],"algorithms.":[160],"Importantly,":[161],"confirms":[164],"concept":[166],"\"biological":[168],"invariance\"":[169],"altered":[172],"should":[174],"be":[175,199],"independent":[176],"methodology":[180],"classifier":[183],"used":[184],"for":[185],"their":[186],"inference.":[187],"Nevertheless,":[188],"still":[189],"some":[190],"modifications":[191],"needed":[193],"able":[200],"sample":[202],"correctly":[203],"uncertainty":[205,217],"space":[206,218],"probabilistic":[213],"parameterization":[214],"not":[220],"unique":[221],"use":[224],"optimum":[227],"network":[228],"might":[229],"falsify":[230],"analysis.":[233]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
