{"id":"https://openalex.org/W3119311934","doi":"https://doi.org/10.1186/s12859-020-03923-6","title":"Examination of hydrogen cross-feeders using a colonic microbiota model","display_name":"Examination of hydrogen cross-feeders using a colonic microbiota model","publication_year":2021,"publication_date":"2021-01-06","ids":{"openalex":"https://openalex.org/W3119311934","doi":"https://doi.org/10.1186/s12859-020-03923-6","mag":"3119311934","pmid":"https://pubmed.ncbi.nlm.nih.gov/33407079"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03923-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03923-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03923-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03923-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003027944","display_name":"Nick W. Smith","orcid":"https://orcid.org/0000-0002-6230-4355"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]},{"id":"https://openalex.org/I4210159946","display_name":"Riddet Institute","ror":"https://ror.org/053336823","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I154130895","https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I4405260297","https://openalex.org/I4405260297","https://openalex.org/I51158804","https://openalex.org/I80281795"]},{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Nick W. Smith","raw_affiliation_strings":["AgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand","Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand","School of Food and Advanced Technology, Massey University, Palmerston North, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand","institution_ids":["https://openalex.org/I41125697"]},{"raw_affiliation_string":"Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand","institution_ids":["https://openalex.org/I4210159946","https://openalex.org/I51158804"]},{"raw_affiliation_string":"School of Food and Advanced Technology, Massey University, Palmerston North, New Zealand","institution_ids":["https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011709167","display_name":"Paul R. Shorten","orcid":"https://orcid.org/0000-0001-5938-8837"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]},{"id":"https://openalex.org/I4210159946","display_name":"Riddet Institute","ror":"https://ror.org/053336823","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I154130895","https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I4405260297","https://openalex.org/I4405260297","https://openalex.org/I51158804","https://openalex.org/I80281795"]},{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Paul R. Shorten","raw_affiliation_strings":["AgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand. paul.shorten@agresearch.co.nz","Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand. paul.shorten@agresearch.co.nz","Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand"],"raw_orcid":"https://orcid.org/0000-0001-5938-8837","affiliations":[{"raw_affiliation_string":"AgResearch, Ruakura Research Centre, Private Bag 3123, Hamilton, 3240, New Zealand. paul.shorten@agresearch.co.nz","institution_ids":["https://openalex.org/I41125697"]},{"raw_affiliation_string":"Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand. paul.shorten@agresearch.co.nz","institution_ids":["https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I51158804"]},{"raw_affiliation_string":"Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand","institution_ids":["https://openalex.org/I4210159946","https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005535025","display_name":"Eric Altermann","orcid":"https://orcid.org/0000-0003-1376-1549"},"institutions":[{"id":"https://openalex.org/I41125697","display_name":"AgResearch","ror":"https://ror.org/0124gwh94","country_code":"NZ","type":"government","lineage":["https://openalex.org/I41125697","https://openalex.org/I4405260297"]},{"id":"https://openalex.org/I4210159946","display_name":"Riddet Institute","ror":"https://ror.org/053336823","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I154130895","https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I4405260297","https://openalex.org/I4405260297","https://openalex.org/I51158804","https://openalex.org/I80281795"]},{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Eric Altermann","raw_affiliation_strings":["AgResearch, Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand","High-Value Nutrition National Science Challenge, Auckland, New Zealand","Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AgResearch, Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442, New Zealand","institution_ids":["https://openalex.org/I41125697"]},{"raw_affiliation_string":"High-Value Nutrition National Science Challenge, Auckland, New Zealand","institution_ids":[]},{"raw_affiliation_string":"Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand","institution_ids":["https://openalex.org/I4210159946","https://openalex.org/I51158804"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029816928","display_name":"Nicole C. Roy","orcid":"https://orcid.org/0000-0002-6744-9705"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I4210159946","display_name":"Riddet Institute","ror":"https://ror.org/053336823","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I154130895","https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I4405260297","https://openalex.org/I4405260297","https://openalex.org/I51158804","https://openalex.org/I80281795"]},{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]},{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Nicole C. Roy","raw_affiliation_strings":["Department of Human Nutrition, University of Otago, Dunedin, New Zealand","High-Value Nutrition National Science Challenge, Auckland, New Zealand","Liggins Institute, The University of Auckland, Auckland, New Zealand","Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Nutrition, University of Otago, Dunedin, New Zealand","institution_ids":["https://openalex.org/I80281795"]},{"raw_affiliation_string":"High-Value Nutrition National Science Challenge, Auckland, New Zealand","institution_ids":[]},{"raw_affiliation_string":"Liggins Institute, The University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand","institution_ids":["https://openalex.org/I4210159946","https://openalex.org/I51158804"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058964430","display_name":"Warren C. McNabb","orcid":"https://orcid.org/0000-0003-2514-6551"},"institutions":[{"id":"https://openalex.org/I4210159946","display_name":"Riddet Institute","ror":"https://ror.org/053336823","country_code":"NZ","type":"facility","lineage":["https://openalex.org/I1320288732","https://openalex.org/I154130895","https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I4405260297","https://openalex.org/I4405260297","https://openalex.org/I51158804","https://openalex.org/I80281795"]},{"id":"https://openalex.org/I51158804","display_name":"Massey University","ror":"https://ror.org/052czxv31","country_code":"NZ","type":"education","lineage":["https://openalex.org/I51158804"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Warren C. McNabb","raw_affiliation_strings":["High-Value Nutrition National Science Challenge, Auckland, New Zealand","Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"High-Value Nutrition National Science Challenge, Auckland, New Zealand","institution_ids":[]},{"raw_affiliation_string":"Riddet Institute, Massey University, Private Bag 11222, Palmerston North, 4442, New Zealand","institution_ids":["https://openalex.org/I4210159946","https://openalex.org/I51158804"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011709167"],"corresponding_institution_ids":["https://openalex.org/I41125697","https://openalex.org/I4210159946","https://openalex.org/I51158804"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":0.8882,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.71029381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10858","display_name":"Clinical Nutrition and Gastroenterology","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10365","display_name":"Gastrointestinal motility and disorders","score":0.9591000080108643,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5860794186592102},{"id":"https://openalex.org/keywords/methanogen","display_name":"Methanogen","score":0.5562748312950134},{"id":"https://openalex.org/keywords/bacteroides","display_name":"Bacteroides","score":0.5505382418632507},{"id":"https://openalex.org/keywords/gut-flora","display_name":"Gut flora","score":0.5376016497612},{"id":"https://openalex.org/keywords/functional-group","display_name":"Functional group","score":0.5282950401306152},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5131769776344299},{"id":"https://openalex.org/keywords/microbial-metabolism","display_name":"Microbial metabolism","score":0.4976561367511749},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.47699740529060364},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4212660491466522},{"id":"https://openalex.org/keywords/food-science","display_name":"Food science","score":0.4107006788253784},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.4103021025657654},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35713058710098267},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2972569167613983},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2853476405143738},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1041230857372284},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09687444567680359}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5860794186592102},{"id":"https://openalex.org/C2777438225","wikidata":"https://www.wikidata.org/wiki/Q1169785","display_name":"Methanogen","level":3,"score":0.5562748312950134},{"id":"https://openalex.org/C2778168646","wikidata":"https://www.wikidata.org/wiki/Q133186","display_name":"Bacteroides","level":3,"score":0.5505382418632507},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.5376016497612},{"id":"https://openalex.org/C2777332933","wikidata":"https://www.wikidata.org/wiki/Q170409","display_name":"Functional group","level":3,"score":0.5282950401306152},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5131769776344299},{"id":"https://openalex.org/C101014631","wikidata":"https://www.wikidata.org/wiki/Q4889568","display_name":"Microbial metabolism","level":3,"score":0.4976561367511749},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.47699740529060364},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4212660491466522},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.4107006788253784},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.4103021025657654},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35713058710098267},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2972569167613983},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2853476405143738},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1041230857372284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09687444567680359},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D003106","descriptor_name":"Colon","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006859","descriptor_name":"Hydrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006859","descriptor_name":"Hydrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006859","descriptor_name":"Hydrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013440","descriptor_name":"Sulfides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013440","descriptor_name":"Sulfides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013440","descriptor_name":"Sulfides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03923-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03923-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03923-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33407079","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33407079","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:e57c28a0de484487b2417f2c3cc0cb85","is_oa":true,"landing_page_url":"https://doaj.org/article/e57c28a0de484487b2417f2c3cc0cb85","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-29 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6700764","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7789523","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7789523","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7789523","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03923-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03923-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03923-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310144","display_name":"Tertiary Education Commission","ror":"https://ror.org/05xhe5a74"},{"id":"https://openalex.org/F4320330278","display_name":"Riddet Institute","ror":"https://ror.org/053336823"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3119311934.pdf","grobid_xml":"https://content.openalex.org/works/W3119311934.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W101807314","https://openalex.org/W1538162631","https://openalex.org/W1587662484","https://openalex.org/W1762677459","https://openalex.org/W1815717996","https://openalex.org/W1847859849","https://openalex.org/W1877854700","https://openalex.org/W1880846949","https://openalex.org/W1910084854","https://openalex.org/W1969522589","https://openalex.org/W1973913750","https://openalex.org/W1975760403","https://openalex.org/W1976037419","https://openalex.org/W1986762736","https://openalex.org/W1992348505","https://openalex.org/W1995393174","https://openalex.org/W1999146852","https://openalex.org/W2000434168","https://openalex.org/W2002941870","https://openalex.org/W2011532775","https://openalex.org/W2021446345","https://openalex.org/W2023636248","https://openalex.org/W2032230795","https://openalex.org/W2036520783","https://openalex.org/W2058341998","https://openalex.org/W2065900009","https://openalex.org/W2068354067","https://openalex.org/W2081525874","https://openalex.org/W2084269566","https://openalex.org/W2086627627","https://openalex.org/W2089407496","https://openalex.org/W2093671789","https://openalex.org/W2102247752","https://openalex.org/W2103088074","https://openalex.org/W2109744701","https://openalex.org/W2110936821","https://openalex.org/W2117595393","https://openalex.org/W2119739111","https://openalex.org/W2120681802","https://openalex.org/W2123812491","https://openalex.org/W2124424637","https://openalex.org/W2128654255","https://openalex.org/W2139816774","https://openalex.org/W2151177215","https://openalex.org/W2153198204","https://openalex.org/W2155997663","https://openalex.org/W2160427027","https://openalex.org/W2166562121","https://openalex.org/W2178459747","https://openalex.org/W2180333272","https://openalex.org/W2207096656","https://openalex.org/W2221432233","https://openalex.org/W2403137787","https://openalex.org/W2475076757","https://openalex.org/W2497914496","https://openalex.org/W2567777922","https://openalex.org/W2617261748","https://openalex.org/W2623541919","https://openalex.org/W2732432057","https://openalex.org/W2749956722","https://openalex.org/W2753408817","https://openalex.org/W2753904859","https://openalex.org/W2770339693","https://openalex.org/W2772152958","https://openalex.org/W2778450356","https://openalex.org/W2782117197","https://openalex.org/W2792438492","https://openalex.org/W2797197806","https://openalex.org/W2904453744","https://openalex.org/W2905360191","https://openalex.org/W2918039709","https://openalex.org/W2944790464","https://openalex.org/W2952185578","https://openalex.org/W2957731174","https://openalex.org/W2997520701","https://openalex.org/W2998048307","https://openalex.org/W3001887602","https://openalex.org/W3080780062","https://openalex.org/W4300332656"],"related_works":["https://openalex.org/W2160921054","https://openalex.org/W2349592263","https://openalex.org/W2084528372","https://openalex.org/W2101663226","https://openalex.org/W2331416602","https://openalex.org/W1481640284","https://openalex.org/W4248607148","https://openalex.org/W1546727323","https://openalex.org/W638577851","https://openalex.org/W2154371868"],"abstract_inverted_index":{"BACKGROUND:":[0],"Hydrogen":[1],"cross-feeding":[2],"microbes":[3],"form":[4],"a":[5,159,279],"functionally":[6],"important":[7,270],"subset":[8],"of":[9,20,60,79,88,92,124,143,192,198,233,272],"the":[10,21,61,74,86,93,122,132,144,151,166,169,175,187,193,211,230,234,253,259,269,273,286],"human":[11],"colonic":[12,75,145,167,287],"microbiota.":[13,288],"The":[14,66,189],"three":[15,62],"major":[16],"hydrogenotrophic":[17,63],"functional":[18,64,128,200,218],"groups":[19,201],"colon:":[22],"sulphate-reducing":[23],"bacteria":[24],"(SRB),":[25],"methanogens":[26],"and":[27,41,52,85,113,116,134,156,180,240,243,281],"reductive":[28],"acetogens,":[29],"have":[30],"been":[31],"linked":[32],"to":[33,73,103,165,184,203,210,224,264,284],"wide":[34],"ranging":[35],"impacts":[36],"on":[37],"host":[38,82,89],"physiology,":[39],"health":[40],"wellbeing.":[42],"RESULTS:":[43],"An":[44],"existing":[45,97],"mathematical":[46],"model":[47,67,146,170,194,255,260],"for":[48,58,71,216],"microbial":[49,199],"community":[50],"growth":[51,123],"metabolism":[53],"was":[54,68,117,222],"combined":[55],"with":[56,153,238,245],"models":[57],"each":[59,217],"groups.":[65],"further":[69],"developed":[70],"application":[72],"environment":[76,275],"via":[77],"inclusion":[78,87],"responsive":[80],"pH,":[81],"metabolite":[83],"absorption":[84],"mucins.":[90],"Predictions":[91],"model,":[94,235],"using":[95],"two":[96],"metabolic":[98,212],"parameter":[99,213],"sets,":[100],"were":[101,147,208],"compared":[102,262],"experimental":[104,267],"faecal":[105],"culture":[106],"datasets.":[107],"Model":[108],"accuracy":[109],"varied":[110],"between":[111],"experiments":[112],"measured":[114,177,204],"variables":[115],"most":[118],"successful":[119],"in":[120,178,186,229,252],"predicting":[121],"high":[125],"relative":[126,196],"abundance":[127],"groups,":[129],"such":[130],"as":[131],"Bacteroides,":[133],"short":[135],"chain":[136],"fatty":[137],"acid":[138],"(SCFA)":[139],"production.":[140],"Two":[141],"versions":[142],"developed:":[148],"one":[149,157],"representing":[150],"colon":[152,274],"sequential":[154],"compartments":[155],"utilising":[158],"continuous":[160,190,231],"spatial":[161],"representation.":[162],"When":[163],"applied":[164],"environment,":[168],"predicted":[171],"pH":[172],"dynamics":[173],"within":[174],"ranges":[176],"vivo":[179],"SCFA":[181],"ratios":[182],"comparable":[183,202],"those":[185],"literature.":[188],"version":[191,232],"simulated":[195],"abundances":[197],"values,":[205],"but":[206,248],"predictions":[207,261],"sensitive":[209],"values":[214],"used":[215],"group.":[219],"Sulphate":[220],"availability":[221],"found":[223],"strongly":[225],"influence":[226],"hydrogenotroph":[227],"activity":[228],"correlating":[236],"positively":[237],"SRB":[239],"sulphide":[241],"concentration":[242],"negatively":[244],"methanogen":[246],"concentration,":[247],"had":[249],"no":[250],"effect":[251],"compartmentalised":[254],"version.":[256],"CONCLUSIONS:":[257],"Although":[258],"well":[263],"only":[265],"some":[266],"measurements,":[268],"features":[271],"included":[276],"make":[277],"it":[278],"novel":[280],"useful":[282],"contribution":[283],"modelling":[285]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
