{"id":"https://openalex.org/W3113157522","doi":"https://doi.org/10.1186/s12859-020-03917-4","title":"ped_draw: pedigree drawing with ease","display_name":"ped_draw: pedigree drawing with ease","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3113157522","doi":"https://doi.org/10.1186/s12859-020-03917-4","mag":"3113157522","pmid":"https://pubmed.ncbi.nlm.nih.gov/33297934"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03917-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03917-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03917-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03917-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089573549","display_name":"Matt Velinder","orcid":"https://orcid.org/0000-0003-3350-8647"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matt Velinder","raw_affiliation_strings":["Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA. matt.velinder@utah.edu","Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA"],"raw_orcid":"https://orcid.org/0000-0003-3350-8647","affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA. matt.velinder@utah.edu","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011555482","display_name":"Dillon Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dillon Lee","raw_affiliation_strings":["Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000369565","display_name":"G\u00e1bor Marth","orcid":"https://orcid.org/0000-0003-0222-1694"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabor Marth","raw_affiliation_strings":["Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5089573549"],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8809,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.77702375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"21","issue":"1","first_page":"569","last_page":"569"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.4555000066757202,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.4555000066757202,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.08910000324249268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11577","display_name":"Cognitive Abilities and Testing","score":0.05460000038146973,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7246067523956299},{"id":"https://openalex.org/keywords/pedigree-chart","display_name":"Pedigree chart","score":0.7016805410385132},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6872072219848633},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.5790140628814697},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5673575401306152},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4810526669025421},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40587297081947327},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34927672147750854},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2707597613334656},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2115960717201233},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16327860951423645},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1475229263305664},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09128418564796448}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7246067523956299},{"id":"https://openalex.org/C22593422","wikidata":"https://www.wikidata.org/wiki/Q3242583","display_name":"Pedigree chart","level":3,"score":0.7016805410385132},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6872072219848633},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.5790140628814697},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5673575401306152},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4810526669025421},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40587297081947327},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34927672147750854},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2707597613334656},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2115960717201233},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16327860951423645},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1475229263305664},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09128418564796448},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010375","descriptor_name":"Pedigree","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03917-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03917-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03917-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33297934","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33297934","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f6da248af1f14adbae23e6f03f82d7f1","is_oa":true,"landing_page_url":"https://doaj.org/article/f6da248af1f14adbae23e6f03f82d7f1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-5 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7727153","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7727153","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03917-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03917-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03917-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1792416623","display_name":null,"funder_award_id":"R01HG009000","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4978075815","display_name":null,"funder_award_id":"R01HG009712","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3113157522.pdf","grobid_xml":"https://content.openalex.org/works/W3113157522.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W1999887312","https://openalex.org/W2076658681","https://openalex.org/W2119180969","https://openalex.org/W2158875345","https://openalex.org/W2767101728"],"related_works":["https://openalex.org/W2279490262","https://openalex.org/W2473551174","https://openalex.org/W2366107444","https://openalex.org/W2366851666","https://openalex.org/W4234609815","https://openalex.org/W2079819877","https://openalex.org/W1863835373","https://openalex.org/W2354653683","https://openalex.org/W2944823289","https://openalex.org/W2951882034"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pedigree":[1],"files":[2,31],"are":[3],"ubiquitously":[4],"used":[5,156],"within":[6],"bioinformatics":[7],"and":[8,18,74,86,102,120,126,140,230,242],"genetics":[9],"studies":[10],"to":[11,42,48,82,100,129,142,165,178,185,225,240],"convey":[12],"critical":[13],"information":[14],"about":[15],"relatedness,":[16],"sex":[17],"affected":[19,57],"status":[20,58],"of":[21,29,53,59,66,93,135,228,238],"study":[22],"samples.":[23],"While":[24],"the":[25,56,143,176,191,202],"text":[26,110,192],"based":[27],"format":[28,81],"ped":[30],"is":[32,38,133,213],"efficient":[33],"for":[34,146],"computational":[35],"methods,":[36],"it":[37,97],"not":[39],"immediately":[40],"intuitive":[41],"a":[43,77,94,105,108,117,124,158,181,187,196,214],"bioinformatician":[44],"or":[45,194],"geneticist":[46],"trying":[47],"understand":[49],"family":[50,88],"structures,":[51],"many":[52],"which":[54],"encode":[55],"individuals":[60],"across":[61],"multiple":[62],"generations.":[63],"The":[64,150,170],"visualization":[65],"pedigrees":[67,139,148],"into":[68],"connected":[69],"nodes":[70],"with":[71,235],"descriptive":[72],"shapes":[73],"shading":[75],"provides":[76],"far":[78],"more":[79],"interpretable":[80],"recognize":[83],"visual":[84,95],"patterns":[85],"intuit":[87],"structures.":[89],"Despite":[90],"these":[91],"advantages":[92],"pedigree,":[96],"remains":[98],"difficult":[99],"quickly":[101,241],"accurately":[103],"visualize":[104,244],"pedigree":[106,109,130,182,188,197,216],"given":[107],"file.":[111,169,198],"RESULTS:":[112],"Here":[113],"we":[114],"describe":[115],"ped_draw":[116,212],"command":[118,151],"line":[119,152],"web":[121,171],"tool":[122,153,218],"as":[123,157],"simple":[125,159],"easy":[127],"solution":[128],"visualization.":[131],"Ped_draw":[132,232],"capable":[134],"drawing":[136,217],"complex":[137],"multi-generational":[138],"conforms":[141],"accepted":[144],"standards":[145],"depicting":[147],"visually.":[149],"can":[154,200],"be":[155],"one":[160],"liner":[161],"command,":[162],"utilizing":[163],"graphviz":[164],"generate":[166],"an":[167],"image":[168,204],"tool,":[172],"https://peddraw.github.io":[173],",":[174],"allows":[175,233],"user":[177],"either:":[179],"paste":[180],"file,":[183],"type":[184],"construct":[186],"file":[189,205],"in":[190,206],"box":[193],"upload":[195],"Users":[199],"save":[201],"generated":[203],"various":[207,236],"formats.":[208],"CONCLUSIONS:":[209],"We":[210],"believe":[211],"useful":[215],"that":[219],"improves":[220],"on":[221],"current":[222],"methods":[223],"due":[224],"its":[226],"ease":[227],"use":[229],"approachability.":[231],"users":[234],"levels":[237],"expertise":[239],"easily":[243],"pedigrees.":[245]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
