{"id":"https://openalex.org/W3109234430","doi":"https://doi.org/10.1186/s12859-020-03908-5","title":"LabPipe: an extensible bioinformatics toolkit to manage experimental data and metadata","display_name":"LabPipe: an extensible bioinformatics toolkit to manage experimental data and metadata","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3109234430","doi":"https://doi.org/10.1186/s12859-020-03908-5","mag":"3109234430","pmid":"https://pubmed.ncbi.nlm.nih.gov/33267792"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03908-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03908-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03908-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03908-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055778766","display_name":"Bo Zhao","orcid":"https://orcid.org/0000-0002-3799-9183"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Bo Zhao","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046898916","display_name":"Luke Bryant","orcid":"https://orcid.org/0000-0001-5231-4851"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Luke Bryant","raw_affiliation_strings":["Department of Chemistry, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051276943","display_name":"Rebecca L. Cordell","orcid":"https://orcid.org/0000-0002-3775-0193"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rebecca Cordell","raw_affiliation_strings":["Department of Chemistry, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071693665","display_name":"Michael Wilde","orcid":"https://orcid.org/0000-0003-0726-890X"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael Wilde","raw_affiliation_strings":["Department of Chemistry, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026016325","display_name":"Dahlia Salman","orcid":"https://orcid.org/0000-0002-5354-2407"},"institutions":[{"id":"https://openalex.org/I143804889","display_name":"Loughborough University","ror":"https://ror.org/04vg4w365","country_code":"GB","type":"education","lineage":["https://openalex.org/I143804889"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dahlia Salman","raw_affiliation_strings":["Department of Chemistry, Loughborough University, Loughborough, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Loughborough University, Loughborough, UK","institution_ids":["https://openalex.org/I143804889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016226577","display_name":"Dorota Ruszkiewicz","orcid":"https://orcid.org/0000-0002-7578-2970"},"institutions":[{"id":"https://openalex.org/I143804889","display_name":"Loughborough University","ror":"https://ror.org/04vg4w365","country_code":"GB","type":"education","lineage":["https://openalex.org/I143804889"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dorota Ruszkiewicz","raw_affiliation_strings":["Department of Chemistry, Loughborough University, Loughborough, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Loughborough University, Loughborough, UK","institution_ids":["https://openalex.org/I143804889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048187193","display_name":"Wadah Ibrahim","orcid":"https://orcid.org/0000-0001-6404-895X"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wadah Ibrahim","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019862059","display_name":"Amisha Singapuri","orcid":"https://orcid.org/0009-0002-4711-7516"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Amisha Singapuri","raw_affiliation_strings":["NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073654128","display_name":"Tim Coats","orcid":"https://orcid.org/0000-0003-2736-2784"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210129041","display_name":"NIHR Leicester Cardiovascular Biomedical Research Unit","ror":"https://ror.org/03ke6rf22","country_code":"GB","type":"government","lineage":["https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210129041"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim Coats","raw_affiliation_strings":["Department of Cardiovascular Sciences, Cardiovascular Research Centre, University of Leicester, Leicester, UK","Department of Chemistry, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cardiovascular Sciences, Cardiovascular Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210129041","https://openalex.org/I153648349"]},{"raw_affiliation_string":"Department of Chemistry, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061374559","display_name":"Erol Gaillard","orcid":"https://orcid.org/0000-0003-0996-8133"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Erol Gaillard","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059546230","display_name":"Caroline Beardsmore","orcid":"https://orcid.org/0000-0001-9112-5172"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Caroline Beardsmore","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108706012","display_name":"Toru Suzuki","orcid":null},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210129041","display_name":"NIHR Leicester Cardiovascular Biomedical Research Unit","ror":"https://ror.org/03ke6rf22","country_code":"GB","type":"government","lineage":["https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210129041"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Toru Suzuki","raw_affiliation_strings":["Department of Cardiovascular Sciences, Cardiovascular Research Centre, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cardiovascular Sciences, Cardiovascular Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210129041","https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091305818","display_name":"Leong L. Ng","orcid":"https://orcid.org/0000-0002-6553-5749"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210129041","display_name":"NIHR Leicester Cardiovascular Biomedical Research Unit","ror":"https://ror.org/03ke6rf22","country_code":"GB","type":"government","lineage":["https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210129041"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Leong Ng","raw_affiliation_strings":["Department of Cardiovascular Sciences, Cardiovascular Research Centre, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cardiovascular Sciences, Cardiovascular Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210129041","https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086775566","display_name":"Neil Greening","orcid":"https://orcid.org/0000-0003-0453-7529"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neil Greening","raw_affiliation_strings":["NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113879491","display_name":"Paul Thomas","orcid":null},"institutions":[{"id":"https://openalex.org/I143804889","display_name":"Loughborough University","ror":"https://ror.org/04vg4w365","country_code":"GB","type":"education","lineage":["https://openalex.org/I143804889"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Thomas","raw_affiliation_strings":["Department of Chemistry, Loughborough University, Loughborough, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, Loughborough University, Loughborough, UK","institution_ids":["https://openalex.org/I143804889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034666185","display_name":"P. S. Monks","orcid":null},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Monks","raw_affiliation_strings":["Department of Chemistry, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048320859","display_name":"Christopher E. Brightling","orcid":"https://orcid.org/0000-0002-9345-4903"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher Brightling","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009297900","display_name":"Salman Siddiqui","orcid":"https://orcid.org/0000-0003-3770-7870"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Salman Siddiqui","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051426092","display_name":"Robert C. Free","orcid":"https://orcid.org/0000-0001-8053-435X"},"institutions":[{"id":"https://openalex.org/I153648349","display_name":"University of Leicester","ror":"https://ror.org/04h699437","country_code":"GB","type":"education","lineage":["https://openalex.org/I153648349"]},{"id":"https://openalex.org/I4210166781","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525","country_code":"GB","type":"facility","lineage":["https://openalex.org/I143804889","https://openalex.org/I153648349","https://openalex.org/I2802445252","https://openalex.org/I34931013","https://openalex.org/I4210166781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert C. Free","raw_affiliation_strings":["Department of Respiratory Sciences, University of Leicester, Leicester, UK. rob.free@leicester.ac.uk","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK. rob.free@leicester.ac.uk","NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK"],"raw_orcid":"https://orcid.org/0000-0001-8053-435X","affiliations":[{"raw_affiliation_string":"Department of Respiratory Sciences, University of Leicester, Leicester, UK. rob.free@leicester.ac.uk","institution_ids":["https://openalex.org/I153648349"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK. rob.free@leicester.ac.uk","institution_ids":["https://openalex.org/I4210166781"]},{"raw_affiliation_string":"NIHR Leicester Biomedical Research Centre, University of Leicester, Leicester, UK","institution_ids":["https://openalex.org/I4210166781","https://openalex.org/I153648349"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5055778766"],"corresponding_institution_ids":["https://openalex.org/I153648349","https://openalex.org/I4210166781"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3335,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58338803,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"21","issue":"1","first_page":"556","last_page":"556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.38019999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.38019999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.30970001220703125,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.15700000524520874,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.9110597968101501},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7476328611373901},{"id":"https://openalex.org/keywords/data-element","display_name":"Data element","score":0.653811514377594},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.6489357948303223},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.5972113013267517},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5602021217346191},{"id":"https://openalex.org/keywords/vendor","display_name":"Vendor","score":0.5597180724143982},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.5106762051582336},{"id":"https://openalex.org/keywords/meta-data-services","display_name":"Meta Data Services","score":0.4750409424304962},{"id":"https://openalex.org/keywords/data-collection","display_name":"Data collection","score":0.4306970238685608},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.42645666003227234},{"id":"https://openalex.org/keywords/data-mapping","display_name":"Data mapping","score":0.42572999000549316},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3385113477706909},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3250107169151306},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1447719931602478},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08070728182792664}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.9110597968101501},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7476328611373901},{"id":"https://openalex.org/C30872290","wikidata":"https://www.wikidata.org/wiki/Q1172389","display_name":"Data element","level":3,"score":0.653811514377594},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.6489357948303223},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.5972113013267517},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5602021217346191},{"id":"https://openalex.org/C2777338717","wikidata":"https://www.wikidata.org/wiki/Q1762621","display_name":"Vendor","level":2,"score":0.5597180724143982},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.5106762051582336},{"id":"https://openalex.org/C136976847","wikidata":"https://www.wikidata.org/wiki/Q6822297","display_name":"Meta Data Services","level":4,"score":0.4750409424304962},{"id":"https://openalex.org/C133462117","wikidata":"https://www.wikidata.org/wiki/Q4929239","display_name":"Data collection","level":2,"score":0.4306970238685608},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.42645666003227234},{"id":"https://openalex.org/C137314826","wikidata":"https://www.wikidata.org/wiki/Q2330408","display_name":"Data mapping","level":2,"score":0.42572999000549316},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3385113477706909},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3250107169151306},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1447719931602478},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08070728182792664},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03908-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03908-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03908-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33267792","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33267792","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:d9acf65666e54bc3a5c97de82ca2c9e2","is_oa":true,"landing_page_url":"https://doaj.org/article/d9acf65666e54bc3a5c97de82ca2c9e2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-7 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/13352675","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/LabPipe_an_extensible_bioinformatics_toolkit_to_manage_experimental_data_and_metadata/13352675","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7709404","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7709404","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03908-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03908-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03908-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G1040650420","display_name":null,"funder_award_id":"MR/N005880/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5051753213","display_name":null,"funder_award_id":"BLFPHD17-1","funder_id":"https://openalex.org/F4320320055","funder_display_name":"British Lung Foundation"},{"id":"https://openalex.org/G5217948534","display_name":null,"funder_award_id":"MR/N005880/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7583723839","display_name":"East Midlands Breathomics Pathology Node (EMBER)","funder_award_id":"MR/N005880/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320313322","display_name":"University Hospitals of Leicester NHS Trust","ror":"https://ror.org/02fha3693"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319994","display_name":"Department of Health and Social Care","ror":"https://ror.org/03sbpja79"},{"id":"https://openalex.org/F4320320055","display_name":"British Lung Foundation","ror":"https://ror.org/05qnwyb92"},{"id":"https://openalex.org/F4320320276","display_name":"University of Leicester","ror":"https://ror.org/04h699437"},{"id":"https://openalex.org/F4320320341","display_name":"Loughborough University","ror":"https://ror.org/04vg4w365"},{"id":"https://openalex.org/F4320331454","display_name":"Midlands Asthma and Allergy Research Association","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320336903","display_name":"NIHR Leicester Biomedical Research Centre","ror":"https://ror.org/05xqxa525"},{"id":"https://openalex.org/F4320337147","display_name":"NIHR Leicester Clinical Research Facility","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3109234430.pdf","grobid_xml":"https://content.openalex.org/works/W3109234430.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1964336313","https://openalex.org/W2123152121","https://openalex.org/W2130430745","https://openalex.org/W2213908726","https://openalex.org/W2576602937","https://openalex.org/W2922528344"],"related_works":["https://openalex.org/W2183628870","https://openalex.org/W2379265733","https://openalex.org/W2347306054","https://openalex.org/W3016521766","https://openalex.org/W1503116306","https://openalex.org/W3199469221","https://openalex.org/W2545809202","https://openalex.org/W3084772717","https://openalex.org/W2362378919","https://openalex.org/W2981561176"],"abstract_inverted_index":{"BACKGROUND:":[0],"Data":[1],"handling":[2,101,124],"in":[3,87,110],"clinical":[4,90],"bioinformatics":[5],"is":[6,44],"often":[7],"inadequate.":[8],"No":[9],"freely":[10],"available":[11],"tools":[12],"provide":[13],"straightforward":[14],"approaches":[15],"for":[16,69,100],"consistent,":[17,97],"flexible":[18,41,116],"metadata":[19,71,78,102],"collection":[20],"and":[21,55,72,76,80,103,108,114],"linkage":[22,81,109],"of":[23,82],"related":[24],"experimental":[25,104],"data":[26,74,105,123],"generated":[27],"locally":[28],"by":[29],"vendor":[30,53],"software.":[31],"RESULTS:":[32],"To":[33],"address":[34],"this":[35],"problem,":[36],"we":[37],"created":[38],"LabPipe,":[39],"a":[40,47,58,88,96],"toolkit":[42,62],"which":[43],"driven":[45],"through":[46],"local":[48,73],"client":[49],"that":[50],"runs":[51],"alongside":[52],"software":[54],"connects":[56],"to":[57,66,118],"light-weight":[59],"server.":[60],"The":[61],"allows":[63],"re-usable":[64],"configurations":[65],"be":[67],"defined":[68],"experiment":[70],"collection,":[75,106],"handles":[77],"entry":[79],"data.":[83],"LabPipe":[84,94],"was":[85,115],"piloted":[86],"multi-site":[89],"breathomics":[91],"study.":[92],"CONCLUSIONS:":[93],"provided":[95],"controlled":[98],"approach":[99],"collation":[107],"the":[111],"exemplar":[112],"study":[113],"enough":[117],"deal":[119],"effectively":[120],"with":[121],"different":[122],"challenges.":[125]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
