{"id":"https://openalex.org/W3108741090","doi":"https://doi.org/10.1186/s12859-020-03907-6","title":"Regional registration of whole slide image stacks containing major histological artifacts","display_name":"Regional registration of whole slide image stacks containing major histological artifacts","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3108741090","doi":"https://doi.org/10.1186/s12859-020-03907-6","mag":"3108741090","pmid":"https://pubmed.ncbi.nlm.nih.gov/33276732"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03907-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03907-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03907-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03907-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002713888","display_name":"M Paknezhad","orcid":"https://orcid.org/0000-0001-5280-202X"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Mahsa Paknezhad","raw_affiliation_strings":["Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore. mahsap@bii.a-star.edu.sg","Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore"],"raw_orcid":"https://orcid.org/0000-0001-5280-202X","affiliations":[{"raw_affiliation_string":"Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore. mahsap@bii.a-star.edu.sg","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"]},{"raw_affiliation_string":"Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067726692","display_name":"Sheng Yang Michael Loh","orcid":null},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Sheng Yang Michael Loh","raw_affiliation_strings":["Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084553579","display_name":"Yukti Choudhury","orcid":"https://orcid.org/0000-0002-0038-0520"},"institutions":[{"id":"https://openalex.org/I4210113188","display_name":"Institute of Bioengineering and Nanotechnology","ror":"https://ror.org/022xyn875","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210113188"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yukti Choudhury","raw_affiliation_strings":["Institute of Bioengineering and Nanotechnology, 31 Biopolis Way, The Nanos 09-01, 138669, Singapore, Singapore","Lucence Diagnostics, 217 Henderson Road, 03-08, Henderson Industrial Park, 159555, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioengineering and Nanotechnology, 31 Biopolis Way, The Nanos 09-01, 138669, Singapore, Singapore","institution_ids":["https://openalex.org/I4210113188"]},{"raw_affiliation_string":"Lucence Diagnostics, 217 Henderson Road, 03-08, Henderson Industrial Park, 159555, Singapore, Singapore","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070049050","display_name":"Valerie Koh Cui Koh","orcid":null},"institutions":[{"id":"https://openalex.org/I2251586001","display_name":"Singapore General Hospital","ror":"https://ror.org/036j6sg82","country_code":"SG","type":"healthcare","lineage":["https://openalex.org/I2251586001"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Valerie Koh Cui Koh","raw_affiliation_strings":["Singapore General Hospital, Outram Road, 169608, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore General Hospital, Outram Road, 169608, Singapore, Singapore","institution_ids":["https://openalex.org/I2251586001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028178249","display_name":"Timothy Kwang Yong Tay","orcid":"https://orcid.org/0000-0001-8592-5018"},"institutions":[{"id":"https://openalex.org/I75573869","display_name":"Institute of Molecular and Cell Biology","ror":"https://ror.org/04xpsrn94","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I75573869"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Timothy Tay Kwang Yong","raw_affiliation_strings":["Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore","institution_ids":["https://openalex.org/I75573869"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102625660","display_name":"Hui Shan Tan","orcid":"https://orcid.org/0000-0001-8263-5912"},"institutions":[{"id":"https://openalex.org/I4210094239","display_name":"Image and Pervasive Access Laboratory","ror":"https://ror.org/00m3mb357","country_code":"SG","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210094239"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hui Shan Tan","raw_affiliation_strings":["Image and Pervasive Access Lab (IPAL), CNRS UMI 2955, 1 Fusionopolis Way, 138632, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image and Pervasive Access Lab (IPAL), CNRS UMI 2955, 1 Fusionopolis Way, 138632, Singapore, Singapore","institution_ids":["https://openalex.org/I4210094239"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037495975","display_name":"Ravindran Kanesvaran","orcid":"https://orcid.org/0000-0002-2351-881X"},"institutions":[{"id":"https://openalex.org/I75573869","display_name":"Institute of Molecular and Cell Biology","ror":"https://ror.org/04xpsrn94","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I75573869"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Ravindran Kanesvaran","raw_affiliation_strings":["Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore","institution_ids":["https://openalex.org/I75573869"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074190354","display_name":"Puay Hoon Tan","orcid":"https://orcid.org/0000-0002-1052-8605"},"institutions":[{"id":"https://openalex.org/I2251586001","display_name":"Singapore General Hospital","ror":"https://ror.org/036j6sg82","country_code":"SG","type":"healthcare","lineage":["https://openalex.org/I2251586001"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Puay Hoon Tan","raw_affiliation_strings":["Singapore General Hospital, Outram Road, 169608, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore General Hospital, Outram Road, 169608, Singapore, Singapore","institution_ids":["https://openalex.org/I2251586001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078290814","display_name":"John Yuen Shyi Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I2251586001","display_name":"Singapore General Hospital","ror":"https://ror.org/036j6sg82","country_code":"SG","type":"healthcare","lineage":["https://openalex.org/I2251586001"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"John Yuen Shyi Peng","raw_affiliation_strings":["Singapore General Hospital, Outram Road, 169608, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore General Hospital, Outram Road, 169608, Singapore, Singapore","institution_ids":["https://openalex.org/I2251586001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015449777","display_name":"Weimiao Yu","orcid":"https://orcid.org/0000-0001-5092-1009"},"institutions":[{"id":"https://openalex.org/I4210137145","display_name":"National Cancer Centre Singapore","ror":"https://ror.org/03bqk3e80","country_code":"SG","type":"healthcare","lineage":["https://openalex.org/I4210137145"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Weimiao Yu","raw_affiliation_strings":["National Cancer Centre Singapore, 11 Hospital Drive, 169610, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Cancer Centre Singapore, 11 Hospital Drive, 169610, Singapore, Singapore","institution_ids":["https://openalex.org/I4210137145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061254406","display_name":"Yongcheng Benjamin Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I75573869","display_name":"Institute of Molecular and Cell Biology","ror":"https://ror.org/04xpsrn94","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I75573869"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yongcheng Benjamin Tan","raw_affiliation_strings":["Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore","institution_ids":["https://openalex.org/I75573869"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038570976","display_name":"Yong Zhen Loy","orcid":null},"institutions":[{"id":"https://openalex.org/I2251586001","display_name":"Singapore General Hospital","ror":"https://ror.org/036j6sg82","country_code":"SG","type":"healthcare","lineage":["https://openalex.org/I2251586001"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yong Zhen Loy","raw_affiliation_strings":["Singapore General Hospital, Outram Road, 169608, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Singapore General Hospital, Outram Road, 169608, Singapore, Singapore","institution_ids":["https://openalex.org/I2251586001"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108730373","display_name":"Min-Han Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113188","display_name":"Institute of Bioengineering and Nanotechnology","ror":"https://ror.org/022xyn875","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210113188"]},{"id":"https://openalex.org/I75573869","display_name":"Institute of Molecular and Cell Biology","ror":"https://ror.org/04xpsrn94","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I75573869"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Min-Han Tan","raw_affiliation_strings":["Institute of Bioengineering and Nanotechnology, 31 Biopolis Way, The Nanos 09-01, 138669, Singapore, Singapore","Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore","Lucence Diagnostics, 217 Henderson Road, 03-08, Henderson Industrial Park, 159555, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioengineering and Nanotechnology, 31 Biopolis Way, The Nanos 09-01, 138669, Singapore, Singapore","institution_ids":["https://openalex.org/I4210113188"]},{"raw_affiliation_string":"Institute of Molecular and Cell Biology, 61 Biopolis Drive, 138673, Singapore, Singapore","institution_ids":["https://openalex.org/I75573869"]},{"raw_affiliation_string":"Lucence Diagnostics, 217 Henderson Road, 03-08, Henderson Industrial Park, 159555, Singapore, Singapore","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032667101","display_name":"Hwee Kuan Lee","orcid":"https://orcid.org/0000-0003-1932-5377"},"institutions":[{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I4210094239","display_name":"Image and Pervasive Access Laboratory","ror":"https://ror.org/00m3mb357","country_code":"SG","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210094239"]},{"id":"https://openalex.org/I4210116917","display_name":"Singapore Eye Research Institute","ror":"https://ror.org/02crz6e12","country_code":"SG","type":"facility","lineage":["https://openalex.org/I4210116917"]},{"id":"https://openalex.org/I4210148498","display_name":"Bioinformatics Institute","ror":"https://ror.org/044w3nw43","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I4210148498"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Hwee Kuan Lee","raw_affiliation_strings":["Image and Pervasive Access Lab (IPAL), CNRS UMI 2955, 1 Fusionopolis Way, 138632, Singapore, Singapore","Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore","National University of Singapore, 21 Lower Kent Ridge Rd, 119077, Singapore, Singapore","Singapore Eye Research Institute, 20 College Road, 169856, Singapore, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image and Pervasive Access Lab (IPAL), CNRS UMI 2955, 1 Fusionopolis Way, 138632, Singapore, Singapore","institution_ids":["https://openalex.org/I4210094239"]},{"raw_affiliation_string":"Imaging Informatics Division, Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, 07-01, Matrix, 138671, Singapore, Singapore","institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"]},{"raw_affiliation_string":"National University of Singapore, 21 Lower Kent Ridge Rd, 119077, Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Singapore Eye Research Institute, 20 College Road, 169856, Singapore, Singapore","institution_ids":["https://openalex.org/I4210116917"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5002713888"],"corresponding_institution_ids":["https://openalex.org/I115228651","https://openalex.org/I4210148498"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.9789,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.78880138,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"558","last_page":"558"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.8740000128746033,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.8740000128746033,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.05380000174045563,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10531","display_name":"Advanced Vision and Imaging","score":0.01080000028014183,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6235875487327576},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5913383960723877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5838330388069153},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5649490356445312},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.4268718957901001},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.23663786053657532}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6235875487327576},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5913383960723877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5838330388069153},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5649490356445312},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.4268718957901001},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.23663786053657532}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001808","descriptor_name":"Blood Vessels","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001808","descriptor_name":"Blood Vessels","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001808","descriptor_name":"Blood Vessels","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001808","descriptor_name":"Blood Vessels","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001808","descriptor_name":"Blood Vessels","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001808","descriptor_name":"Blood Vessels","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000098","qualifier_name":"blood supply","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000098","qualifier_name":"blood supply","is_major_topic":false},{"descriptor_ui":"D002292","descriptor_name":"Carcinoma, Renal Cell","qualifier_ui":"Q000098","qualifier_name":"blood supply","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007150","descriptor_name":"Immunohistochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03907-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03907-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03907-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33276732","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33276732","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/199262","is_oa":true,"landing_page_url":"https://scholarbank.nus.edu.sg/handle/10635/199262","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus OA2020","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:bdadf78b333347eab4c2e7bbc578715f","is_oa":true,"landing_page_url":"https://doaj.org/article/bdadf78b333347eab4c2e7bbc578715f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-20 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7718714","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7718714","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03907-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03907-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03907-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W112908001","https://openalex.org/W119836836","https://openalex.org/W1907124864","https://openalex.org/W1968030837","https://openalex.org/W1971804973","https://openalex.org/W2064146386","https://openalex.org/W2074079901","https://openalex.org/W2076092288","https://openalex.org/W2109204794","https://openalex.org/W2114487471","https://openalex.org/W2121075186","https://openalex.org/W2124386111","https://openalex.org/W2139714314","https://openalex.org/W2166562585","https://openalex.org/W2166702211","https://openalex.org/W2167279371","https://openalex.org/W2344147939","https://openalex.org/W2418021069","https://openalex.org/W2505469783","https://openalex.org/W2601127096","https://openalex.org/W2732601952","https://openalex.org/W2891340270","https://openalex.org/W2891631795","https://openalex.org/W2918851092","https://openalex.org/W2922479016","https://openalex.org/W2963387277","https://openalex.org/W2965638611","https://openalex.org/W3104164805","https://openalex.org/W3105392623"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":{"BACKGROUND:":[0],"High":[1],"resolution":[2],"2D":[3,23,46],"whole":[4,72,111,153,189,235],"slide":[5,112,190,236],"imaging":[6],"provides":[7],"rich":[8],"information":[9,15],"about":[10],"the":[11,41,45,56,71,116,129,131,150,161,175,229,247],"tissue":[12,31,42,60,73,81,154],"structure.":[13],"This":[14,49],"can":[16,25],"be":[17,26,76,89],"a":[18,29,97,142,193,222],"lot":[19],"richer":[20],"if":[21],"these":[22],"images":[24,191,237],"stacked":[27],"into":[28],"3D":[30,34],"volume.":[32],"A":[33],"analysis,":[35],"however,":[36],"requires":[37],"accurate":[38,102,226],"reconstruction":[39],"of":[40,106,108,118,164,231,234],"volume":[43],"from":[44],"image":[47],"stack.":[48],"task":[50],"is":[51,86],"not":[52],"trivial":[53],"due":[54],"to":[55,88,100,221,228],"distortions":[57],"such":[58],"as":[59,128],"tearing,":[61],"folding":[62],"and":[63,103,160,192,225],"missing":[64],"at":[65],"each":[66],"slide.":[67],"Performing":[68],"registration":[69,85,105,144,155,178,197,233],"for":[70,110,121,188,212],"slices":[74],"may":[75],"adversely":[77],"affected":[78],"by":[79,141,242],"distorted":[80],"regions.":[82],"Consequently,":[83],"regional":[84,162,232],"found":[87],"more":[90,223],"effective.":[91],"In":[92],"this":[93,165],"paper,":[94],"we":[95],"propose":[96],"new":[98],"approach":[99],"an":[101],"robust":[104,224],"regions":[107],"interest":[109],"images.":[113,214],"We":[114],"introduce":[115],"idea":[117],"multi-scale":[119,217],"attention":[120,218],"registration.":[122],"RESULTS:":[123],"Using":[124,216],"mean":[125],"similarity":[126],"index":[127],"metric,":[130],"proposed":[132,171,195],"algorithm":[133,145,156,166,172,179,198],"(mean":[134],"\u00b1":[135],"SD":[136],"[Formula:":[137,181,185,202,209],"see":[138,147,158,168,182,186,203,210],"text])":[139,148,159,187,211],"followed":[140],"fine":[143],"([Formula:":[146,157,167],"outperformed":[149],"state-of-the-art":[151,176],"linear":[152],"version":[163],"text]).":[169],"The":[170],"also":[173],"outperforms":[174],"nonlinear":[177],"(original:":[180],"text],":[183],"regional:":[184],"recently":[194],"patch-based":[196],"(patch":[199],"size":[200,207],"256:":[201],"text]":[204],",":[205],"patch":[206],"512:":[208],"medical":[213],"CONCLUSION:":[215],"mechanism":[219],"leads":[220],"solution":[227],"problem":[230],"corrupted":[238],"in":[239,246],"some":[240],"parts":[241],"major":[243],"histological":[244],"artifacts":[245],"imaged":[248],"tissue.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
