{"id":"https://openalex.org/W3111467036","doi":"https://doi.org/10.1186/s12859-020-03896-6","title":"Combining sequence and network information to enhance protein\u2013protein interaction prediction","display_name":"Combining sequence and network information to enhance protein\u2013protein interaction prediction","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3111467036","doi":"https://doi.org/10.1186/s12859-020-03896-6","mag":"3111467036","pmid":"https://pubmed.ncbi.nlm.nih.gov/33323120"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03896-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03896-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03896-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03896-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101724654","display_name":"Leilei Liu","orcid":"https://orcid.org/0000-0002-1691-2464"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Leilei Liu","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102901784","display_name":"Xianglei Zhu","orcid":"https://orcid.org/0000-0002-1080-6126"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]},{"id":"https://openalex.org/I4210094894","display_name":"China Automotive Technology and Research Center","ror":"https://ror.org/00r5r6807","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210094894"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianglei Zhu","raw_affiliation_strings":["Automotive Data Center, CATARC, No.69 Xianfeng Road, Tianjin, 300300, China","College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"Automotive Data Center, CATARC, No.69 Xianfeng Road, Tianjin, 300300, China","institution_ids":["https://openalex.org/I4210094894"]},{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101601195","display_name":"Yi Ma","orcid":"https://orcid.org/0009-0000-9351-4358"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Ma","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004540162","display_name":"Haiyin Piao","orcid":"https://orcid.org/0000-0002-8519-4750"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haiyin Piao","raw_affiliation_strings":["School of Electronics and Information, Northwestern Polytechnical University, No.127 West Youyi Road, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Electronics and Information, Northwestern Polytechnical University, No.127 West Youyi Road, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090073634","display_name":"Yaodong Yang","orcid":"https://orcid.org/0000-0001-8132-5613"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaodong Yang","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103137659","display_name":"Xiaotian Hao","orcid":"https://orcid.org/0000-0002-3084-8366"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaotian Hao","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010029387","display_name":"Yue Fu","orcid":"https://orcid.org/0000-0003-1076-1615"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Fu","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100336197","display_name":"Li Wang","orcid":"https://orcid.org/0000-0003-2165-0080"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Wang","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China. wangli@tju.edu.cn","College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China. wangli@tju.edu.cn","institution_ids":[]},{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, No.135 Yaguan Road, Tianjin, 300350, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, No.127 West Youyi Road, Xi'an, 710072, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, No.127 West Youyi Road, Xi'an, 710072, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5101724654"],"corresponding_institution_ids":["https://openalex.org/I162868743"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.5914,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.90785458,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"21","issue":"S16","first_page":"537","last_page":"537"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6443992853164673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6096809506416321},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5406261682510376},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5165438055992126},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48686307668685913},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4701882600784302},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.457256942987442},{"id":"https://openalex.org/keywords/interaction-information","display_name":"Interaction information","score":0.42455506324768066},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3937387466430664},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35853201150894165},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.2948165535926819},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2827703058719635},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14957007765769958},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13060960173606873},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12871161103248596}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6443992853164673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6096809506416321},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5406261682510376},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5165438055992126},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48686307668685913},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4701882600784302},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.457256942987442},{"id":"https://openalex.org/C38764148","wikidata":"https://www.wikidata.org/wiki/Q17098245","display_name":"Interaction information","level":2,"score":0.42455506324768066},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3937387466430664},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35853201150894165},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.2948165535926819},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2827703058719635},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14957007765769958},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13060960173606873},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12871161103248596},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03896-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03896-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03896-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33323120","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33323120","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f528aba59dc1481b99b1de4af3830325","is_oa":true,"landing_page_url":"https://doaj.org/article/f528aba59dc1481b99b1de4af3830325","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S16, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7739453","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7739453","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03896-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03896-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-020-03896-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3085993365","display_name":null,"funder_award_id":"(Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4618526568","display_name":null,"funder_award_id":"Grant Nos. U1836214","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5854786607","display_name":null,"funder_award_id":"Tianjin","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8921145797","display_name":null,"funder_award_id":"U1836214","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3111467036.pdf","grobid_xml":"https://content.openalex.org/works/W3111467036.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1916445035","https://openalex.org/W1976526581","https://openalex.org/W1985919127","https://openalex.org/W1992006348","https://openalex.org/W2090703756","https://openalex.org/W2099862356","https://openalex.org/W2132398523","https://openalex.org/W2143612262","https://openalex.org/W2152705149","https://openalex.org/W2161922860","https://openalex.org/W2163605009","https://openalex.org/W2340589369","https://openalex.org/W2344144945","https://openalex.org/W2519887557","https://openalex.org/W2526285516","https://openalex.org/W2560105324","https://openalex.org/W2565516711","https://openalex.org/W2616246685","https://openalex.org/W2747329762","https://openalex.org/W2772551569","https://openalex.org/W2786016794","https://openalex.org/W2885583144","https://openalex.org/W2890911678","https://openalex.org/W2895846631","https://openalex.org/W2900569176","https://openalex.org/W2907492528","https://openalex.org/W2950834624","https://openalex.org/W2952253955","https://openalex.org/W2963341956","https://openalex.org/W2965165621","https://openalex.org/W2965676832","https://openalex.org/W3104087655","https://openalex.org/W4210257598","https://openalex.org/W6601158201","https://openalex.org/W6702248584"],"related_works":["https://openalex.org/W2159663778","https://openalex.org/W2053028024","https://openalex.org/W2936543792","https://openalex.org/W2011602722","https://openalex.org/W2981223346","https://openalex.org/W2056092504","https://openalex.org/W2024383575","https://openalex.org/W2318097870","https://openalex.org/W4236358448","https://openalex.org/W2395301313"],"abstract_inverted_index":{"In":[0],"previous":[1],"research":[2],"methods,":[3],"most":[4],"of":[5,24],"them":[6],"only":[7],"used":[8],"protein":[9],"amino":[10,32],"acid":[11,33],"sequence":[12,34],"as":[13],"input":[14],"information":[15,23,35,38],"to":[16,39],"make":[17,40],"predictions,":[18],"without":[19],"considering":[20],"the":[21],"structural":[22],"PPIs":[25],"networks":[26],"graph.":[27],"We":[28],"first":[29],"time":[30],"combine":[31],"and":[36],"position":[37],"representations":[41],"for":[42],"proteins.":[43],"The":[44],"experimental":[45],"results":[46],"indicate":[47],"that":[48],"our":[49],"method":[50],"has":[51],"strong":[52],"competitiveness":[53],"compared":[54],"with":[55],"several":[56],"sequence-based":[57],"methods.":[58]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
