{"id":"https://openalex.org/W3120712761","doi":"https://doi.org/10.1186/s12859-020-03881-z","title":"Propedia: a database for protein\u2013peptide identification based on a hybrid clustering algorithm","display_name":"Propedia: a database for protein\u2013peptide identification based on a hybrid clustering algorithm","publication_year":2021,"publication_date":"2021-01-02","ids":{"openalex":"https://openalex.org/W3120712761","doi":"https://doi.org/10.1186/s12859-020-03881-z","mag":"3120712761","pmid":"https://pubmed.ncbi.nlm.nih.gov/33388027"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03881-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03881-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03881-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03881-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005022300","display_name":"Pedro Martins","orcid":"https://orcid.org/0000-0002-2446-872X"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Pedro M. Martins","raw_affiliation_strings":["Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":"https://orcid.org/0000-0002-2446-872X","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018426427","display_name":"Lucianna Helene Santos","orcid":"https://orcid.org/0000-0002-6910-0697"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Lucianna H. Santos","raw_affiliation_strings":["Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023320487","display_name":"Diego Mariano","orcid":"https://orcid.org/0000-0002-5899-2052"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Diego Mariano","raw_affiliation_strings":["Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007242258","display_name":"Felippe C. Queiroz","orcid":null},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Felippe C. Queiroz","raw_affiliation_strings":["Department of Computer Science, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033463375","display_name":"Luana Luiza Bastos","orcid":"https://orcid.org/0000-0002-6932-0438"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luana L. Bastos","raw_affiliation_strings":["Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033868489","display_name":"Isabela de Souza Gomes","orcid":"https://orcid.org/0000-0001-9311-707X"},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Isabela de S. Gomes","raw_affiliation_strings":["Department of Computer Science, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056623046","display_name":"Pedro Fischer","orcid":null},"institutions":[{"id":"https://openalex.org/I166595947","display_name":"Federal University of S\u00e3o Jo\u00e3o del-Rei","ror":"https://ror.org/03vrj4p82","country_code":"BR","type":"education","lineage":["https://openalex.org/I166595947"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Pedro H. C. Fischer","raw_affiliation_strings":["Laboratory of Molecular Modeling and Bioinformatics, Department of Exact and Biological Sciences, Universidade Federal de S\u00e3o Jo\u00e3o Del-Rei, Rua S\u00e9timo Moreira Martins, Sete Lagoas, MG, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Molecular Modeling and Bioinformatics, Department of Exact and Biological Sciences, Universidade Federal de S\u00e3o Jo\u00e3o Del-Rei, Rua S\u00e9timo Moreira Martins, Sete Lagoas, MG, Brazil","institution_ids":["https://openalex.org/I166595947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088088790","display_name":"Rafael E. O. Rocha","orcid":"https://orcid.org/0000-0002-4314-1220"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Rafael E. O. Rocha","raw_affiliation_strings":["Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021817826","display_name":"Sabrina de Azevedo Silveira","orcid":"https://orcid.org/0000-0002-4723-2349"},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Sabrina A. Silveira","raw_affiliation_strings":["Department of Computer Science, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061687828","display_name":"Leonardo Henrique Fran\u00e7a de Lima","orcid":"https://orcid.org/0000-0003-4346-9880"},"institutions":[{"id":"https://openalex.org/I166595947","display_name":"Federal University of S\u00e3o Jo\u00e3o del-Rei","ror":"https://ror.org/03vrj4p82","country_code":"BR","type":"education","lineage":["https://openalex.org/I166595947"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Leonardo H. F. de Lima","raw_affiliation_strings":["Laboratory of Molecular Modeling and Bioinformatics, Department of Exact and Biological Sciences, Universidade Federal de S\u00e3o Jo\u00e3o Del-Rei, Rua S\u00e9timo Moreira Martins, Sete Lagoas, MG, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Molecular Modeling and Bioinformatics, Department of Exact and Biological Sciences, Universidade Federal de S\u00e3o Jo\u00e3o Del-Rei, Rua S\u00e9timo Moreira Martins, Sete Lagoas, MG, Brazil","institution_ids":["https://openalex.org/I166595947"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017863285","display_name":"Mariana T. Q. de Magalh\u00e3es","orcid":"https://orcid.org/0000-0003-4912-0233"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Mariana T. Q. de Magalh\u00e3es","raw_affiliation_strings":["Macromolecule Biophysics Laboratory (LBM), Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Macromolecule Biophysics Laboratory (LBM), Department of Biochemistry and Immunology, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110910371","display_name":"M. G. A. Oliveira","orcid":null},"institutions":[{"id":"https://openalex.org/I146165071","display_name":"Universidade Federal de Vi\u00e7osa","ror":"https://ror.org/0409dgb37","country_code":"BR","type":"education","lineage":["https://openalex.org/I146165071"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maria G. A. Oliveira","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Universidade Federal de Vi\u00e7osa, Av Peter Henry Rolfs, Vi\u00e7osa, MG, Brazil","institution_ids":["https://openalex.org/I146165071"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069672238","display_name":"Raquel C. de Melo-Minardi","orcid":"https://orcid.org/0000-0001-5190-100X"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Raquel C. de Melo-Minardi","raw_affiliation_strings":["Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil. raquelcm@dcc.ufmg.br","Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil. raquelcm@dcc.ufmg.br","institution_ids":["https://openalex.org/I110200422"]},{"raw_affiliation_string":"Laboratory of Bioinformatics and Systems (LBS), Department of Computer Science, Universidade Federal de Minas Gerais, Av Pres. Ant\u00f4nio Carlos, Belo Horizonte, MG, 31720-901, Brazil","institution_ids":["https://openalex.org/I110200422"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5005022300"],"corresponding_institution_ids":["https://openalex.org/I110200422"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":11.795,"has_fulltext":true,"cited_by_count":184,"citation_normalized_percentile":{"value":0.99260848,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6265721321105957},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6041966676712036},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5822846293449402},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4442155659198761},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43278640508651733},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38769781589508057},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3813208341598511},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23129019141197205},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1995631754398346},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16566362977027893},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08973285555839539}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6265721321105957},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6041966676712036},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5822846293449402},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4442155659198761},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43278640508651733},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38769781589508057},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3813208341598511},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23129019141197205},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1995631754398346},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16566362977027893},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08973285555839539},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03881-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03881-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03881-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33388027","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33388027","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:fb8491aabc6f4e0694b46c718c24726b","is_oa":true,"landing_page_url":"https://doaj.org/article/fb8491aabc6f4e0694b46c718c24726b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-20 (2021)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:6691068","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC7776311","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7776311","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7776311","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03881-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03881-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03881-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1382761819","display_name":null,"funder_award_id":"23038.004007/2014-82","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G2608137146","display_name":null,"funder_award_id":"51/2013 - 23038.004007/2014-82","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4246447654","display_name":null,"funder_award_id":"23038","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G4420547349","display_name":null,"funder_award_id":"51/2013","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322980","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de Minas Gerais","ror":"https://ror.org/00nc55f03"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3120712761.pdf","grobid_xml":"https://content.openalex.org/works/W3120712761.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1867832306","https://openalex.org/W1987134040","https://openalex.org/W1997954369","https://openalex.org/W2004091546","https://openalex.org/W2004360551","https://openalex.org/W2010292401","https://openalex.org/W2031901496","https://openalex.org/W2039092320","https://openalex.org/W2049091299","https://openalex.org/W2052033556","https://openalex.org/W2054954101","https://openalex.org/W2055043387","https://openalex.org/W2062110365","https://openalex.org/W2077799814","https://openalex.org/W2080614447","https://openalex.org/W2081912151","https://openalex.org/W2083747978","https://openalex.org/W2085829368","https://openalex.org/W2089597488","https://openalex.org/W2094079380","https://openalex.org/W2094519647","https://openalex.org/W2097817417","https://openalex.org/W2110968143","https://openalex.org/W2114850508","https://openalex.org/W2116890528","https://openalex.org/W2127322768","https://openalex.org/W2132022337","https://openalex.org/W2135621733","https://openalex.org/W2138770756","https://openalex.org/W2140047797","https://openalex.org/W2142678478","https://openalex.org/W2145268834","https://openalex.org/W2146940292","https://openalex.org/W2154019529","https://openalex.org/W2158266834","https://openalex.org/W2168172687","https://openalex.org/W2175270296","https://openalex.org/W2334166365","https://openalex.org/W2620589125","https://openalex.org/W2724823461","https://openalex.org/W2741990630","https://openalex.org/W2756360571","https://openalex.org/W2763396749","https://openalex.org/W2798400874","https://openalex.org/W2874062053","https://openalex.org/W2897780894","https://openalex.org/W2910637413","https://openalex.org/W2911390449","https://openalex.org/W2912930263","https://openalex.org/W2931205426","https://openalex.org/W2938466933","https://openalex.org/W2945669687","https://openalex.org/W2953997005","https://openalex.org/W2973756194","https://openalex.org/W2994315623","https://openalex.org/W3015490972","https://openalex.org/W3016271240","https://openalex.org/W4246995357","https://openalex.org/W4247964656","https://openalex.org/W4320800236","https://openalex.org/W6807695228"],"related_works":["https://openalex.org/W4298130764","https://openalex.org/W2804364458","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W2090259340","https://openalex.org/W1926736923","https://openalex.org/W2158836806","https://openalex.org/W2393816671","https://openalex.org/W2083665254","https://openalex.org/W2942177010"],"abstract_inverted_index":{"Propedia":[0,34],"is":[1,35,48],"a":[2,38,42],"database":[3],"and":[4,24,44,47],"tool":[5],"to":[6,21],"support":[7],"structure-based":[8],"rational":[9],"design":[10],"of":[11],"peptides":[12],"for":[13,28],"special":[14],"purposes.":[15],"Protein-peptide":[16],"interactions":[17],"can":[18],"be":[19],"useful":[20],"predict,":[22],"classifying":[23],"scoring":[25],"complexes":[26],"or":[27],"designing":[29],"new":[30],"molecules":[31],"as":[32,37],"well.":[33],"up-to-date":[36],"ready-to-use":[39],"webserver":[40],"with":[41],"friendly":[43],"resourceful":[45],"interface":[46],"available":[49],"at:":[50],"https://bioinfo.dcc.ufmg.br/propedia.":[51]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":44},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":46},{"year":2021,"cited_by_count":19}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}