{"id":"https://openalex.org/W3162698679","doi":"https://doi.org/10.1186/s12859-020-03868-w","title":"DSCMF: prediction of LncRNA-disease associations based on dual sparse collaborative matrix factorization","display_name":"DSCMF: prediction of LncRNA-disease associations based on dual sparse collaborative matrix factorization","publication_year":2021,"publication_date":"2021-05-01","ids":{"openalex":"https://openalex.org/W3162698679","doi":"https://doi.org/10.1186/s12859-020-03868-w","mag":"3162698679","pmid":"https://pubmed.ncbi.nlm.nih.gov/33980147"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03868-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03868-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03868-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03868-w","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086778639","display_name":"Mingming Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming-Ming Gao","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058029547","display_name":"Zhen Cui","orcid":"https://orcid.org/0000-0001-5522-6750"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Cui","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026569643","display_name":"Ying-Lian Gao","orcid":"https://orcid.org/0000-0003-0483-5622"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ying-Lian Gao","raw_affiliation_strings":["Qufu Normal University Library, Qufu Normal University, Rizhao, China. yinliangao@126.com","Qufu Normal University Library, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qufu Normal University Library, Qufu Normal University, Rizhao, China. yinliangao@126.com","institution_ids":[]},{"raw_affiliation_string":"Qufu Normal University Library, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100448913","display_name":"Feng Li","orcid":"https://orcid.org/0000-0002-5556-3789"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Li","raw_affiliation_strings":["School of Computer Science, Qufu Normal University, Rizhao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Qufu Normal University, Rizhao, China","institution_ids":["https://openalex.org/I202126657"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026569643"],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.5915,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.82102231,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"S3","first_page":"241","last_page":"241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9053999781608582,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9053999781608582,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.013000000268220901,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.007199999876320362,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6713047623634338},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.5526625514030457},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41369643807411194},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3495771884918213}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6713047623634338},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.5526625514030457},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41369643807411194},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3495771884918213},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03868-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03868-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03868-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33980147","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33980147","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:255ed18a27e54a2abe03e5bca138a64d","is_oa":true,"landing_page_url":"https://doaj.org/article/255ed18a27e54a2abe03e5bca138a64d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss S3, Pp 1-18 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8114493","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8114493","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03868-w","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03868-w","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03868-w","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G5609717784","display_name":null,"funder_award_id":"61872220","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7974007073","display_name":null,"funder_award_id":"61902216","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3162698679.pdf","grobid_xml":"https://content.openalex.org/works/W3162698679.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W117943783","https://openalex.org/W611910056","https://openalex.org/W1966498224","https://openalex.org/W1985359974","https://openalex.org/W2002185065","https://openalex.org/W2039816251","https://openalex.org/W2059191987","https://openalex.org/W2090234932","https://openalex.org/W2091161969","https://openalex.org/W2093813826","https://openalex.org/W2096451472","https://openalex.org/W2106029302","https://openalex.org/W2128983843","https://openalex.org/W2132310147","https://openalex.org/W2132386490","https://openalex.org/W2135456872","https://openalex.org/W2143129697","https://openalex.org/W2147383099","https://openalex.org/W2152970345","https://openalex.org/W2154395350","https://openalex.org/W2296934997","https://openalex.org/W2365351506","https://openalex.org/W2408796111","https://openalex.org/W2417532721","https://openalex.org/W2435628931","https://openalex.org/W2463141156","https://openalex.org/W2471127780","https://openalex.org/W2507951309","https://openalex.org/W2512308096","https://openalex.org/W2514723491","https://openalex.org/W2532794119","https://openalex.org/W2538540723","https://openalex.org/W2541767715","https://openalex.org/W2583279729","https://openalex.org/W2587685360","https://openalex.org/W2589994040","https://openalex.org/W2591268383","https://openalex.org/W2614101761","https://openalex.org/W2661816031","https://openalex.org/W2736555335","https://openalex.org/W2747139499","https://openalex.org/W2757038198","https://openalex.org/W2761410752","https://openalex.org/W2772618228","https://openalex.org/W2773532330","https://openalex.org/W2782571367","https://openalex.org/W2783548621","https://openalex.org/W2802616725","https://openalex.org/W2810992649","https://openalex.org/W2901312953","https://openalex.org/W2911710225","https://openalex.org/W2912204568","https://openalex.org/W2912279798","https://openalex.org/W2947690494","https://openalex.org/W2950118051","https://openalex.org/W2970225329","https://openalex.org/W2995856614","https://openalex.org/W3147579573"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W2382290278","https://openalex.org/W4395014643"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"the":[2,42,46,84,98,106,111,117,123,129,139,145,148,156,190],"development":[3],"of":[4,38,44,57,119,147,159],"science":[5],"and":[6,19,36,53,59,103,122,155,166],"technology,":[7],"there":[8,13],"are":[9,14,169],"increasing":[10],"evidences":[11],"that":[12],"some":[15,39,68,180],"associations":[16,25,47,74,184],"between":[17,26,48,101],"lncRNAs":[18],"human":[20],"diseases.":[21,40],"Therefore,":[22,61],"finding":[23,45],"these":[24],"them":[27,49],"will":[28],"have":[29],"a":[30,55],"huge":[31],"impact":[32],"on":[33],"our":[34,81,94,120],"treatment":[35],"prevention":[37],"However,":[41],"process":[43],"is":[50,63,78,91,113,126,142,152,176],"very":[51],"difficult":[52],"requires":[54],"lot":[56],"time":[58],"effort.":[60],"it":[62],"particularly":[64],"important":[65],"to":[66,93,115,178,182],"find":[67],"good":[69],"methods":[70],"for":[71],"predicting":[72],"lncRNA-disease":[73,183],"(LDAs).":[75],"RESULTS:":[76],"-norm":[77],"added":[79,92],"in":[80,171],"method.":[82,132],"At":[83,144],"same":[85],"time,":[86],"Gaussian":[87],"interaction":[88],"profile":[89],"kernel":[90],"method,":[95,121],"which":[96],"increase":[97],"network":[99],"similarity":[100],"lncRNA":[102],"disease.":[104],"Finally,":[105],"AUC":[107,124,135],"value":[108,125,136],"obtained":[109,127,137],"by":[110,128,138],"experiment":[112,151],"used":[114],"evaluate":[116],"quality":[118],"ten-fold":[130],"cross-validation":[131],"CONCLUSIONS:":[133],"The":[134,173,186],"DSCMF":[140,174],"method":[141,175],"0.8523.":[143],"end":[146],"paper,":[149],"simulation":[150],"carried":[153],"out,":[154],"experimental":[157],"results":[158],"prostate":[160],"cancer,":[161,163],"breast":[162],"ovarian":[164],"cancer":[165,168],"colorectal":[167],"analyzed":[170],"detail.":[172],"expected":[177],"bring":[179],"help":[181],"research.":[185],"code":[187],"can":[188],"access":[189],"https://github.com/Ming-0113/DSCMF":[191],"website.":[192]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}