{"id":"https://openalex.org/W3116945358","doi":"https://doi.org/10.1186/s12859-020-03867-x","title":"Predicting substitutions to modulate disorder and stability in coiled-coils","display_name":"Predicting substitutions to modulate disorder and stability in coiled-coils","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3116945358","doi":"https://doi.org/10.1186/s12859-020-03867-x","mag":"3116945358","pmid":"https://pubmed.ncbi.nlm.nih.gov/33349244"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03867-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03867-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03867-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03867-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040990618","display_name":"Yasaman Karami","orcid":"https://orcid.org/0000-0001-8413-2665"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]},{"id":"https://openalex.org/I4389425457","display_name":"Institut des Sciences du Calcul et des Donn\u00e9es","ror":"https://ror.org/00y16rm59","country_code":null,"type":"facility","lineage":["https://openalex.org/I39804081","https://openalex.org/I4389425457"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Yasaman Karami","raw_affiliation_strings":["CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France. yasaman.karami@pasteur.fr","Institute of Computing and Data Sciences (ISCD), Sorbonne Universit\u00e9, 75005, Paris, France. yasaman.karami@pasteur.fr","CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France. yasaman.karami@pasteur.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"Institute of Computing and Data Sciences (ISCD), Sorbonne Universit\u00e9, 75005, Paris, France. yasaman.karami@pasteur.fr","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I39804081","https://openalex.org/I4389425457"]},{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040385511","display_name":"Paul Saighi","orcid":"https://orcid.org/0000-0001-9055-2762"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Paul Saighi","raw_affiliation_strings":["CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039562335","display_name":"R\u00e9my Vanderhaegen","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R\u00e9my Vanderhaegen","raw_affiliation_strings":["CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076173260","display_name":"Denis Gerlier","orcid":"https://orcid.org/0000-0001-5539-456X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210161906","display_name":"Centre International de Recherche en Infectiologie","ror":"https://ror.org/059sz6q14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210161906","https://openalex.org/I4405259976"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Denis Gerlier","raw_affiliation_strings":["CIRI, International Center for Infectiology Research, INSERM, U1111, Universit\u00e9 Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Sup\u00e9rieure de Lyon, Univ Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRI, International Center for Infectiology Research, INSERM, U1111, Universit\u00e9 Claude Bernard Lyon 1, CNRS, UMR5308, Ecole Normale Sup\u00e9rieure de Lyon, Univ Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I4210161906"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074212421","display_name":"Sonia Longhi","orcid":"https://orcid.org/0000-0002-6829-6771"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210146787","display_name":"Architecture et Fonction des Macromol\u00e9cules Biologiques","ror":"https://ror.org/04jm8zw14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210088668","https://openalex.org/I4210096427","https://openalex.org/I4210146787"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sonia Longhi","raw_affiliation_strings":["CNRS, Architecture et Fonction des Macromol\u00e9cules Biologiques (AFMB), UMR 7257, Aix-Marseille University, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, Architecture et Fonction des Macromol\u00e9cules Biologiques (AFMB), UMR 7257, Aix-Marseille University, Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210146787"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076453514","display_name":"\u00c9lodie Laine","orcid":"https://orcid.org/0000-0003-4870-6304"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Elodie Laine","raw_affiliation_strings":["CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France. elodie.laine@upmc.fr","CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France. elodie.laine@upmc.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038174177","display_name":"Alessandra Carbone","orcid":"https://orcid.org/0000-0003-2098-5743"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Alessandra Carbone","raw_affiliation_strings":["CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France. alessandra.carbone@lip6.fr","Institut Universitaire de France, 75005, Paris, France. alessandra.carbone@lip6.fr","Institut Universitaire de France, 75005, Paris, France"],"raw_orcid":"https://orcid.org/0000-0003-2098-5743","affiliations":[{"raw_affiliation_string":"CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Universit\u00e9, 75005, Paris, France. alessandra.carbone@lip6.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"]},{"raw_affiliation_string":"Institut Universitaire de France, 75005, Paris, France. alessandra.carbone@lip6.fr","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Institut Universitaire de France, 75005, Paris, France","institution_ids":["https://openalex.org/I185839726"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5038174177","https://openalex.org/A5040990618","https://openalex.org/A5076453514"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I185839726","https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I4389425457"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":1337,"currency":"EUR","value_usd":1441},"fwci":0.6067,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.69698129,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"21","issue":"S19","first_page":"573","last_page":"573"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.6682999730110168,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.6682999730110168,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.03620000183582306,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11419","display_name":"Supramolecular Self-Assembly in Materials","score":0.030700000002980232,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coiled-coil","display_name":"Coiled coil","score":0.7078302502632141},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.5455918908119202},{"id":"https://openalex.org/keywords/tetramer","display_name":"Tetramer","score":0.5442185997962952},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.533926248550415},{"id":"https://openalex.org/keywords/multistability","display_name":"Multistability","score":0.5143061876296997},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.47534939646720886},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4274158477783203},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42658424377441406},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.41068288683891296},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36922934651374817},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.34692472219467163},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.338367223739624},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31752049922943115},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2956714332103729},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.18163377046585083},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.1207960844039917}],"concepts":[{"id":"https://openalex.org/C55988834","wikidata":"https://www.wikidata.org/wiki/Q903650","display_name":"Coiled coil","level":2,"score":0.7078302502632141},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.5455918908119202},{"id":"https://openalex.org/C2778886173","wikidata":"https://www.wikidata.org/wiki/Q53832","display_name":"Tetramer","level":3,"score":0.5442185997962952},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.533926248550415},{"id":"https://openalex.org/C2776966350","wikidata":"https://www.wikidata.org/wiki/Q6935096","display_name":"Multistability","level":3,"score":0.5143061876296997},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.47534939646720886},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4274158477783203},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42658424377441406},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.41068288683891296},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36922934651374817},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.34692472219467163},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.338367223739624},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31752049922943115},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2956714332103729},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.18163377046585083},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.1207960844039917},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008459","descriptor_name":"Measles virus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008459","descriptor_name":"Measles virus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008459","descriptor_name":"Measles virus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D045405","descriptor_name":"Nipah Virus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045405","descriptor_name":"Nipah Virus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045405","descriptor_name":"Nipah Virus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-020-03867-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03867-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03867-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33349244","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33349244","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7751101","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7751101","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-03154196v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03154196","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1471-2105","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-03911459v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03911459","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2020, 21 (S19), pp.573. &#x27E8;10.1186/s12859-020-03867-x&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:c4b97fa0ca044aaea8f46b21eb323d2d","is_oa":true,"landing_page_url":"https://doaj.org/article/c4b97fa0ca044aaea8f46b21eb323d2d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S19, Pp 1-20 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03867-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03867-x","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03867-x","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1789083493","display_name":"LABEX pour la mod\u00e9lisation et la simulation scientifiques en recherche","funder_award_id":"ANR-11-LABX-0037","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2838552228","display_name":null,"funder_award_id":"ANR-11-LABX-0037-01","funder_id":"https://openalex.org/F3818900342","funder_display_name":"Forest Research"},{"id":"https://openalex.org/G3115809543","display_name":null,"funder_award_id":"ANR-11-LABX-0037-01","funder_id":"https://openalex.org/F4320323617","funder_display_name":"Commissariat G\u00e9n\u00e9ral \u00e0 l'Investissement"},{"id":"https://openalex.org/G3183336939","display_name":"Vers une cartographie haute r\u00e9solution des interactions prot\u00e9iques \u00e0 l\u2019\u00e9chelle du g\u00e9nome.","funder_award_id":"ANR-11-BINF-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5985061833","display_name":null,"funder_award_id":"ANR-11-IDEX-0004-02","funder_id":"https://openalex.org/F4320323617","funder_display_name":"Commissariat G\u00e9n\u00e9ral \u00e0 l'Investissement"},{"id":"https://openalex.org/G6641938136","display_name":"Equipement d'excellence de calcul intensif de Mesocentres coordonn\u00e9s - Tremplin vers le calcul petaflopique et l'exascale","funder_award_id":"ANR-10-EQPX-0029","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6654833908","display_name":"Sorbonne Universit\u00e9s \u00e0 Paris pour l'Enseignement et la Recherche","funder_award_id":"ANR-11-IDEX-0004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G673552460","display_name":null,"funder_award_id":"ANR-10-EQPX- 29-01","funder_id":"https://openalex.org/F4320323617","funder_display_name":"Commissariat G\u00e9n\u00e9ral \u00e0 l'Investissement"},{"id":"https://openalex.org/G8861310602","display_name":null,"funder_award_id":"ANR-11-BINF-0003","funder_id":"https://openalex.org/F4320323617","funder_display_name":"Commissariat G\u00e9n\u00e9ral \u00e0 l'Investissement"}],"funders":[{"id":"https://openalex.org/F3818900342","display_name":"Forest Research","ror":null},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320323617","display_name":"Commissariat G\u00e9n\u00e9ral \u00e0 l'Investissement","ror":"https://ror.org/02ywp9g98"},{"id":"https://openalex.org/F4320330232","display_name":"Sorbonne Universit\u00e9","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3116945358.pdf","grobid_xml":"https://content.openalex.org/works/W3116945358.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1577024459","https://openalex.org/W1965535540","https://openalex.org/W1984450731","https://openalex.org/W1993680739","https://openalex.org/W1994941561","https://openalex.org/W2001842251","https://openalex.org/W2008708467","https://openalex.org/W2014906507","https://openalex.org/W2024645073","https://openalex.org/W2035266068","https://openalex.org/W2035909170","https://openalex.org/W2045629943","https://openalex.org/W2057668415","https://openalex.org/W2067174909","https://openalex.org/W2067568488","https://openalex.org/W2075460992","https://openalex.org/W2079953513","https://openalex.org/W2091554092","https://openalex.org/W2100290722","https://openalex.org/W2125531604","https://openalex.org/W2126064524","https://openalex.org/W2130479394","https://openalex.org/W2151102828","https://openalex.org/W2156407548","https://openalex.org/W2290466891","https://openalex.org/W2477195065","https://openalex.org/W2553669656","https://openalex.org/W2604509319","https://openalex.org/W2623618735","https://openalex.org/W2782327081","https://openalex.org/W2794825320","https://openalex.org/W2896482460","https://openalex.org/W2898164218","https://openalex.org/W2944809668","https://openalex.org/W2994944231","https://openalex.org/W3016298884","https://openalex.org/W3017392242","https://openalex.org/W6821281084"],"related_works":["https://openalex.org/W1527571384","https://openalex.org/W2383189914","https://openalex.org/W2963840034","https://openalex.org/W4301445084","https://openalex.org/W1984975294","https://openalex.org/W1964251919","https://openalex.org/W4226178663","https://openalex.org/W1517717759","https://openalex.org/W3117205993","https://openalex.org/W2898049514"],"abstract_inverted_index":{"BACKGROUND:":[0],"Coiled-coils":[1],"are":[2,19,32,48],"described":[3],"as":[4,51,258],"stable":[5,37],"structural":[6,229],"motifs,":[7],"where":[8],"two":[9,236],"or":[10],"more":[11],"helices":[12],"wind":[13],"around":[14],"each":[15],"other.":[16],"However,":[17,56],"coiled-coils":[18],"associated":[20],"with":[21],"local":[22],"mobility":[23],"and":[24,39,62,77,99,138,165,177,231,246,272],"intrinsic":[25],"disorder.":[26,106],"Intrinsically":[27],"disordered":[28],"regions":[29],"in":[30,45,60,97],"proteins":[31],"characterized":[33],"by":[34,117],"lack":[35],"of":[36,67,69,92,113,134,157,159,163,171,175,183,198,205,212,223,243],"secondary":[38],"tertiary":[40],"structure":[41],"under":[42],"physiological":[43],"conditions":[44],"vitro.":[46],"They":[47],"increasingly":[49],"recognized":[50],"important":[52],"for":[53,194],"protein":[54,71],"function.":[55],"characterizing":[57],"their":[58],"behaviour":[59],"solution":[61,98],"determining":[63],"precisely":[64],"the":[65,90,111,129,155,160,184,195,203,206,210,241,244,247],"extent":[66,91,156],"disorder":[68,93,158],"a":[70,85,95,172,191,221,259],"region":[72,162],"remains":[73],"challenging,":[74],"both":[75,142],"experimentally":[76],"computationally.":[78],"RESULTS:":[79],"In":[80],"this":[81,188],"work,":[82],"we":[83,219],"propose":[84],"computational":[86],"framework":[87,193],"to":[88,100,128,216,225,261,265],"quantify":[89,154],"within":[94],"coiled-coil":[96],"help":[101,153],"design":[102,197,235,266],"substitutions":[103,199,214,267],"modulating":[104,202],"such":[105],"Our":[107,253],"method":[108,151,254],"relies":[109],"on":[110],"analysis":[112],"conformational":[114,185],"ensembles":[115],"generated":[116],"relatively":[118],"short":[119],"all-atom":[120],"Molecular":[121],"Dynamics":[122],"(MD)":[123],"simulations.":[124],"We":[125,147,233],"apply":[126],"it":[127],"phosphoprotein":[130],"multimerisation":[131],"domains":[132],"(PMD)":[133],"Measles":[135],"virus":[136,140],"(MeV)":[137],"Nipah":[139],"(NiV),":[141],"forming":[143],"tetrameric":[144],"left-handed":[145],"coiled-coils.":[146,207],"show":[148],"that":[149],"our":[150],"can":[152,255],"C-terminus":[161],"MeV":[164,227],"NiV":[166],"PMDs":[167],"from":[168],"MD":[169],"simulations":[170],"few":[173],"tens":[174],"nanoseconds,":[176],"without":[178],"requiring":[179],"an":[180],"extensive":[181],"exploration":[182],"space.":[186],"Moreover,":[187],"study":[189],"provided":[190],"conceptual":[192],"rational":[196],"aimed":[200,268],"at":[201,269],"stability":[204,230,242],"By":[208],"assessing":[209],"impact":[211],"four":[213],"known":[215],"destabilize":[217],"coiled-coils,":[218],"derive":[220],"set":[222],"rules":[224],"control":[226],"PMD":[228],"cohesiveness.":[232],"therefore":[234],"contrasting":[237],"substitutions,":[238],"one":[239],"increasing":[240,249],"tetramer":[245],"other":[248],"its":[250],"flexibility.":[251],"CONCLUSIONS:":[252],"be":[256],"considered":[257],"platform":[260],"reason":[262],"about":[263],"how":[264],"regulating":[270],"flexibility":[271],"stability.":[273]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
