{"id":"https://openalex.org/W3091932908","doi":"https://doi.org/10.1186/s12859-020-03797-8","title":"Impact of data preprocessing on cell-type clustering based on single-cell RNA-seq data","display_name":"Impact of data preprocessing on cell-type clustering based on single-cell RNA-seq data","publication_year":2020,"publication_date":"2020-10-07","ids":{"openalex":"https://openalex.org/W3091932908","doi":"https://doi.org/10.1186/s12859-020-03797-8","mag":"3091932908","pmid":"https://pubmed.ncbi.nlm.nih.gov/33028196"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03797-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03797-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03797-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03797-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101729791","display_name":"Chunxiang Wang","orcid":"https://orcid.org/0000-0002-6130-3553"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunxiang Wang","raw_affiliation_strings":["School of Mathematics and Statistics, Shandong University (Weihai), Weihai, 264209, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Shandong University (Weihai), Weihai, 264209, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100618900","display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia. xin.gao@kaust.edu.sa","Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia. xin.gao@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100621526","display_name":"Juntao Liu","orcid":"https://orcid.org/0000-0002-7296-906X"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]},{"id":"https://openalex.org/I4210123583","display_name":"Weihai Municipal Hospital","ror":"https://ror.org/03vpa9q11","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210123583"]},{"id":"https://openalex.org/I4210158823","display_name":"Weihai Science and Technology Bureau","ror":"https://ror.org/05mx4xx46","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210158823"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juntao Liu","raw_affiliation_strings":["School of Mathematics and Statistics, Shandong University (Weihai), Weihai, 264209, China. juntaosdu@126.com","School of Mathematics and Statistics, Shandong University (Weihai), Weihai, 264209, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, Shandong University (Weihai), Weihai, 264209, China. juntaosdu@126.com","institution_ids":["https://openalex.org/I4210123583","https://openalex.org/I4210158823"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Shandong University (Weihai), Weihai, 264209, China","institution_ids":["https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100618900"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":0.8946,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.72196989,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"440","last_page":"440"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.886581540107727},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.7917073965072632},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6272013783454895},{"id":"https://openalex.org/keywords/data-pre-processing","display_name":"Data pre-processing","score":0.5704778432846069},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5309675931930542},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.4324226379394531},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34203049540519714},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3375295400619507}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.886581540107727},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.7917073965072632},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6272013783454895},{"id":"https://openalex.org/C10551718","wikidata":"https://www.wikidata.org/wiki/Q5227332","display_name":"Data pre-processing","level":2,"score":0.5704778432846069},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5309675931930542},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.4324226379394531},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34203049540519714},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3375295400619507}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-020-03797-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03797-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03797-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33028196","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33028196","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:cc6587798d5640b9996256844a3d5ca5","is_oa":true,"landing_page_url":"https://doaj.org/article/cc6587798d5640b9996256844a3d5ca5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7541255","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7541255","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/665618","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/665618","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03797-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03797-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03797-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G1512640061","display_name":null,"funder_award_id":"BAS/1/1624-01, FCC/1/1976-18-01, FCC/1/1976-23-01, FCC/1/1976-25-01, FCC/1/1976-26-01, REI/1/0018-01-01, REI/1/4216-01-01, and URF/1/4098-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G1869317358","display_name":null,"funder_award_id":"BAS/1/1624-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2185879301","display_name":null,"funder_award_id":"FCC/1/1976-26-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2702908835","display_name":null,"funder_award_id":"FCC/1/1976-23-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G3220252743","display_name":"\u57fa\u4e8e\u56fe\u4e0e\u7ec4\u5408\u4f18\u5316\u7684\u751f\u7269\u6570\u636e\u548c\u7f51\u7edc\u6570\u636e\u6316\u6398\u7b97\u6cd5\u7814\u7a76","funder_award_id":"11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4226080583","display_name":null,"funder_award_id":"and URF/1/4098-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G4433044775","display_name":null,"funder_award_id":"FCC/1/1976-23","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5141847693","display_name":null,"funder_award_id":"REI/1/0018-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5528485846","display_name":null,"funder_award_id":"REI/1/4216-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5629790366","display_name":null,"funder_award_id":"FCC/1/1976-18","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5633372335","display_name":null,"funder_award_id":"61801265 and 11931008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6225982113","display_name":null,"funder_award_id":"61801265","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7739191700","display_name":null,"funder_award_id":"FCC/1/1976-25-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8069041701","display_name":null,"funder_award_id":"FCC/1/1976-18-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8450993626","display_name":null,"funder_award_id":"URF/1/4098-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8722125687","display_name":null,"funder_award_id":"FCC/1/1976-26","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8895387355","display_name":null,"funder_award_id":"FCC/1/1976-25","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G932190792","display_name":null,"funder_award_id":"BAS/1/1624-01, FCC/1/1976-18-01, FCC/1/1976-23-01, FCC/1/1976-25-01, FCC/1/1976-26-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3091932908.pdf","grobid_xml":"https://content.openalex.org/works/W3091932908.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1552434751","https://openalex.org/W1754857113","https://openalex.org/W1974113747","https://openalex.org/W2007439698","https://openalex.org/W2009569945","https://openalex.org/W2010653277","https://openalex.org/W2023887100","https://openalex.org/W2033995502","https://openalex.org/W2067655607","https://openalex.org/W2109890799","https://openalex.org/W2120205807","https://openalex.org/W2149573463","https://openalex.org/W2156247618","https://openalex.org/W2187089797","https://openalex.org/W2306630387","https://openalex.org/W2332292689","https://openalex.org/W2471513101","https://openalex.org/W2473258837","https://openalex.org/W2523620612","https://openalex.org/W2562003322","https://openalex.org/W2598326928","https://openalex.org/W2612502013","https://openalex.org/W2624831627","https://openalex.org/W2747545374","https://openalex.org/W2794521141","https://openalex.org/W2800912249","https://openalex.org/W2802302382","https://openalex.org/W2954871042","https://openalex.org/W2997280954","https://openalex.org/W4235169531"],"related_works":["https://openalex.org/W2989490741","https://openalex.org/W1629127207","https://openalex.org/W3092506759","https://openalex.org/W2367545121","https://openalex.org/W4248881655","https://openalex.org/W2482165163","https://openalex.org/W3010890513","https://openalex.org/W1999117613","https://openalex.org/W120741642","https://openalex.org/W2952736244"],"abstract_inverted_index":{"BACKGROUND:":[0],"Advances":[1],"in":[2,168],"single-cell":[3,27,111,173],"RNA-seq":[4,112],"technology":[5],"have":[6,22],"led":[7],"to":[8,55,163],"great":[9],"opportunities":[10],"for":[11,61,83,90,101,124,142],"the":[12,62,66,72,85,95,119,130,144,153,169,177],"quantitative":[13],"characterization":[14],"of":[15,133,155,158,172,179,185],"cell":[16,103,187],"types,":[17],"and":[18,59,126,149,183],"many":[19],"clustering":[20,43,57,64,99,131,157],"algorithms":[21],"been":[23],"developed":[24],"based":[25],"on":[26,42,71,107],"gene":[28],"expression.":[29],"However,":[30],"we":[31],"found":[32],"that":[33,52],"different":[34,40],"data":[35,87,113,121,146],"preprocessing":[36,50,68,88,122,147],"methods":[37],"show":[38],"quite":[39],"effects":[41],"algorithms.":[44],"Moreover,":[45],"there":[46],"is":[47,53,93,139,161],"no":[48],"specific":[49],"method":[51,69,89,123],"applicable":[54],"all":[56],"algorithms,":[58],"even":[60],"same":[63],"algorithm,":[65,80],"best":[67,86,120,145],"depends":[70],"input":[73],"data.":[74],"RESULTS:":[75],"We":[76],"designed":[77],"a":[78,165],"graph-based":[79],"SC3-e,":[81],"specifically":[82],"discriminating":[84,143],"SC3,":[91],"which":[92],"currently":[94],"most":[96],"widely":[97],"used":[98,110],"algorithm":[100,138],"single":[102],"clustering.":[104],"When":[105],"tested":[106],"eight":[108],"frequently":[109],"sets,":[114],"SC3-e":[115,137],"always":[116],"accurately":[117],"selects":[118],"SC3":[125],"therefore":[127,150],"greatly":[128],"enhances":[129,152],"performance":[132,154],"SC3.":[134,159],"CONCLUSION:":[135],"The":[136],"practically":[140],"powerful":[141],"method,":[148],"largely":[151],"cell-type":[156],"It":[160],"expected":[162],"play":[164],"crucial":[166],"role":[167],"related":[170],"studies":[171,178],"clustering,":[174],"such":[175],"as":[176],"human":[180],"complex":[181],"diseases":[182],"discoveries":[184],"new":[186],"types.":[188]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
