{"id":"https://openalex.org/W3112837331","doi":"https://doi.org/10.1186/s12859-020-03762-5","title":"Moving forward through the in silico modeling of tuberculosis: a further step with UISS-TB","display_name":"Moving forward through the in silico modeling of tuberculosis: a further step with UISS-TB","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3112837331","doi":"https://doi.org/10.1186/s12859-020-03762-5","mag":"3112837331","pmid":"https://pubmed.ncbi.nlm.nih.gov/33308139"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03762-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03762-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03762-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03762-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004880055","display_name":"Giulia Russo","orcid":"https://orcid.org/0000-0001-6616-7856"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Russo","raw_affiliation_strings":["Department of Drug Sciences, University of Catania, 95125, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Drug Sciences, University of Catania, 95125, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078384674","display_name":"Giuseppe Sgroi","orcid":"https://orcid.org/0000-0001-5062-4696"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Sgroi","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025331591","display_name":"Giuseppe Alessandro Parasiliti Palumbo","orcid":"https://orcid.org/0000-0003-4646-9851"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Alessandro Parasiliti Palumbo","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, 95125, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003874484","display_name":"Marzio Pennisi","orcid":"https://orcid.org/0000-0003-0231-7653"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marzio Pennisi","raw_affiliation_strings":["Computer Science Institute, DiSIT, University of Eastern Piedmont, 15121, Alessandria, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Institute, DiSIT, University of Eastern Piedmont, 15121, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063808404","display_name":"Miguel A. Ju\u00e1rez","orcid":"https://orcid.org/0000-0002-5128-0976"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Miguel A. Juarez","raw_affiliation_strings":["School of Mathematics and Statistics, University of Sheffield, Sheffield, S3 7RH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sheffield, Sheffield, S3 7RH, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000283880","display_name":"P\u00e8re-Joan Cardona","orcid":"https://orcid.org/0000-0001-5623-7873"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]},{"id":"https://openalex.org/I4210099160","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias","ror":"https://ror.org/0119pby33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210099160","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I4210137002","display_name":"Institut d'Investigaci\u00f3 en Ci\u00e8ncies de la Salut Germans Trias i Pujol","ror":"https://ror.org/03bzdww12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210137002","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pere-Joan Cardona","raw_affiliation_strings":["Archivel Farma, S.L., 08916, Badalona, Spain","Centro de Investigaci\u00f3n Biom\u00e9dica en Red (CIBER) de Enfermedades Respiratorias, Madrid, Spain","Experimental Tuberculosis Unit (UTE), Fundaci\u00f3 Institut Germans Trias I Pujol (IGTP), Universitat Aut\u00f2noma de Barcelona (UAB), Badalona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Archivel Farma, S.L., 08916, Badalona, Spain","institution_ids":[]},{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red (CIBER) de Enfermedades Respiratorias, Madrid, Spain","institution_ids":["https://openalex.org/I4210099160"]},{"raw_affiliation_string":"Experimental Tuberculosis Unit (UTE), Fundaci\u00f3 Institut Germans Trias I Pujol (IGTP), Universitat Aut\u00f2noma de Barcelona (UAB), Badalona, Spain","institution_ids":["https://openalex.org/I123044942","https://openalex.org/I4210137002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043950818","display_name":"Santo Motta","orcid":"https://orcid.org/0000-0003-3533-2972"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Santo Motta","raw_affiliation_strings":["National Research Council of Italy, 00185, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Research Council of Italy, 00185, Rome, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056365427","display_name":"Kenneth B. Walker","orcid":null},"institutions":[{"id":"https://openalex.org/I2799353445","display_name":"TuBerculosis Vaccine Initiative","ror":"https://ror.org/01hb96w20","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2799353445"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Kenneth B. Walker","raw_affiliation_strings":["TuBerculosis Vaccine Initiative (TBVI), Lelystad, 8219, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TuBerculosis Vaccine Initiative (TBVI), Lelystad, 8219, The Netherlands","institution_ids":["https://openalex.org/I2799353445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029110223","display_name":"Epifanio Fichera","orcid":"https://orcid.org/0000-0002-2071-7813"},"institutions":[{"id":"https://openalex.org/I4210131472","display_name":"Etna Biotech (Italy)","ror":"https://ror.org/03ekg6244","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210131472"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Epifanio Fichera","raw_affiliation_strings":["Etna Biotech S.r.l., 95121, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Etna Biotech S.r.l., 95121, Catania, Italy","institution_ids":["https://openalex.org/I4210131472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086585880","display_name":"Marco Viceconti","orcid":"https://orcid.org/0000-0002-2293-1530"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Viceconti","raw_affiliation_strings":["Department of Industrial Engineering, University of Bologna, 40136, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Industrial Engineering, University of Bologna, 40136, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044340074","display_name":"Francesco Pappalardo","orcid":"https://orcid.org/0000-0003-1668-3320"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Pappalardo","raw_affiliation_strings":["Department of Drug Sciences, University of Catania, 95125, Catania, Italy. francesco.pappalardo@unict.it","Department of Drug Sciences, University of Catania, 95125, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Drug Sciences, University of Catania, 95125, Catania, Italy. francesco.pappalardo@unict.it","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Department of Drug Sciences, University of Catania, 95125, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5044340074"],"corresponding_institution_ids":["https://openalex.org/I39063666"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2790},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2790},"fwci":1.1183,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.7705282,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"21","issue":"S17","first_page":"458","last_page":"458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.6531999707221985,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.6531999707221985,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.2881999909877777,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13410","display_name":"Immune responses and vaccinations","score":0.016899999231100082,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.8466024994850159},{"id":"https://openalex.org/keywords/isoniazid","display_name":"Isoniazid","score":0.7413479089736938},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.7039518356323242},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.6764923930168152},{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.5990128517150879},{"id":"https://openalex.org/keywords/tuberculosis-vaccines","display_name":"Tuberculosis vaccines","score":0.5779232382774353},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5767135620117188},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5091368556022644},{"id":"https://openalex.org/keywords/vaccine-efficacy","display_name":"Vaccine efficacy","score":0.5030297636985779},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.470889151096344},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.4294244647026062},{"id":"https://openalex.org/keywords/intensive-care-medicine","display_name":"Intensive care medicine","score":0.37564587593078613},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.3123069405555725},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20027509331703186},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1895768642425537},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.16829544305801392},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09770193696022034}],"concepts":[{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.8466024994850159},{"id":"https://openalex.org/C2776967927","wikidata":"https://www.wikidata.org/wiki/Q423169","display_name":"Isoniazid","level":3,"score":0.7413479089736938},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.7039518356323242},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.6764923930168152},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.5990128517150879},{"id":"https://openalex.org/C2779078216","wikidata":"https://www.wikidata.org/wiki/Q7850848","display_name":"Tuberculosis vaccines","level":4,"score":0.5779232382774353},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5767135620117188},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5091368556022644},{"id":"https://openalex.org/C2780441014","wikidata":"https://www.wikidata.org/wiki/Q7907952","display_name":"Vaccine efficacy","level":3,"score":0.5030297636985779},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.470889151096344},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.4294244647026062},{"id":"https://openalex.org/C177713679","wikidata":"https://www.wikidata.org/wiki/Q679690","display_name":"Intensive care medicine","level":1,"score":0.37564587593078613},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.3123069405555725},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20027509331703186},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1895768642425537},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.16829544305801392},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09770193696022034},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000995","descriptor_name":"Antitubercular Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007107","descriptor_name":"Immune System","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D007538","descriptor_name":"Isoniazid","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007538","descriptor_name":"Isoniazid","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D007538","descriptor_name":"Isoniazid","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016896","descriptor_name":"Treatment Outcome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D032581","descriptor_name":"Tuberculosis Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D032581","descriptor_name":"Tuberculosis Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D032581","descriptor_name":"Tuberculosis Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-020-03762-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03762-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03762-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33308139","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33308139","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:169342","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:cris.unibo.it:11585/801294","is_oa":true,"landing_page_url":"http://hdl.handle.net/11585/801294","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ddd.uab.cat:253182","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/253182","pdf_url":null,"source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:093741296215474ba5009d10a0501eaf","is_oa":true,"landing_page_url":"https://doaj.org/article/093741296215474ba5009d10a0501eaf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S17, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7733696","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7733696","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03762-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03762-5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03762-5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6899999976158142,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G6734150610","display_name":null,"funder_award_id":"777123","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3112837331.pdf","grobid_xml":"https://content.openalex.org/works/W3112837331.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1481716780","https://openalex.org/W1558813989","https://openalex.org/W1826679922","https://openalex.org/W1972186632","https://openalex.org/W1987179105","https://openalex.org/W1995643892","https://openalex.org/W2004240693","https://openalex.org/W2030885135","https://openalex.org/W2046559260","https://openalex.org/W2065388592","https://openalex.org/W2066424162","https://openalex.org/W2096164927","https://openalex.org/W2151471729","https://openalex.org/W2168874985","https://openalex.org/W2346839593","https://openalex.org/W2412111353","https://openalex.org/W2417575303","https://openalex.org/W2421886710","https://openalex.org/W2516060412","https://openalex.org/W2769106867","https://openalex.org/W2779931721","https://openalex.org/W2955148412","https://openalex.org/W2994705677","https://openalex.org/W3000380019","https://openalex.org/W3005110582","https://openalex.org/W3005140067","https://openalex.org/W3022760315","https://openalex.org/W3112174179","https://openalex.org/W3113072416","https://openalex.org/W4210396378"],"related_works":["https://openalex.org/W2364014117","https://openalex.org/W3028761441","https://openalex.org/W2139106269","https://openalex.org/W2025540013","https://openalex.org/W2352313277","https://openalex.org/W4383816491","https://openalex.org/W2354508747","https://openalex.org/W2019923476","https://openalex.org/W2801208719","https://openalex.org/W2781656467"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,62,221],"2018,":[2],"about":[3],"10":[4,36],"million":[5,15],"people":[6],"were":[7],"found":[8,255],"infected":[9,217],"by":[10,107],"tuberculosis,":[11],"with":[12,168,177,203,270],"approximately":[13],"1.2":[14],"deaths":[16],"worldwide.":[17,39],"Despite":[18],"these":[19],"numbers":[20],"have":[21],"been":[22],"relatively":[23],"stable":[24],"in":[25,148,191,200,249,267],"recent":[26],"years,":[27,42],"tuberculosis":[28,44,53,87,124],"is":[29],"still":[30],"considered":[31],"one":[32,174],"of":[33,49,82,92,102,139,143,159,180,216,232,235,260,262],"the":[34,41,65,80,90,104,130,137,140,172,178,187,192,230,233,257,271],"top":[35],"deadliest":[37],"diseases":[38],"Over":[40],"Mycobacterium":[43],"has":[45],"developed":[46],"a":[47,98,149,213,226,246],"form":[48],"resistance":[50],"to":[51,56,59,89,186,198],"first-line":[52],"treatments,":[54],"specifically":[55],"isoniazid,":[57,184],"leading":[58],"multi-drug-resistant":[60],"tuberculosis.":[61],"this":[63],"context,":[64],"EU":[66],"and":[67,114,126,133,145,183,239,264],"Indian":[68],"DBT":[69],"funded":[70],"project":[71],"STriTuVaD-In":[72],"Silico":[73],"Trial":[74],"for":[75,229],"Tuberculosis":[76],"Vaccine":[77],"Development-is":[78],"supporting":[79],"identification":[81],"new":[83],"interventional":[84],"strategies":[85,238],"against":[86],"thanks":[88],"use":[91],"Universal":[93],"Immune":[94],"System":[95],"Simulator":[96],"(UISS),":[97],"computational":[99],"framework":[100,251],"capable":[101],"predicting":[103],"immunity":[105],"induced":[106],"specific":[108,150,236],"drugs":[109],"such":[110],"as":[111],"therapeutic":[112,237],"vaccines":[113],"antibiotics.":[115],"RESULTS:":[116],"Here,":[117,243],"we":[118,155,244,254],"present":[119,245],"how":[120,134],"UISS":[121,250],"accurately":[122],"simulates":[123],"dynamics":[125],"its":[127],"interaction":[128],"within":[129],"immune":[131],"system,":[132],"it":[135],"predicts":[136],"efficacy":[138],"combined":[141],"action":[142,261],"isoniazid":[144,169],"RUTI":[146,181,209,263],"vaccine":[147,182,210],"digital":[151,161],"population":[152],"cohort.":[153],"Specifically,":[154,253],"simulated":[156,258],"two":[157],"groups":[158],"100":[160],"patients.":[162],"The":[163],"first":[164],"group":[165],"was":[166,175],"treated":[167,176],"only,":[170],"while":[171],"second":[173],"combination":[179],"according":[185],"dosage":[188],"strategy":[189],"described":[190],"clinical":[193,204,241,276],"trial":[194,205],"design.":[195],"UISS-TB":[196],"shows":[197],"be":[199],"good":[201,268],"agreement":[202],"results":[206,272],"suggesting":[207],"that":[208,256],"may":[211],"favor":[212],"partial":[214],"recover":[215],"lung":[218],"tissue.":[219],"CONCLUSIONS:":[220],"silico":[222],"trials":[223],"innovations":[224],"represent":[225],"powerful":[227],"pipeline":[228],"prediction":[231],"effects":[234],"related":[240],"outcomes.":[242],"further":[247],"step":[248],"implementation.":[252],"mechanism":[259],"INH":[265],"are":[266],"alignment":[269],"coming":[273],"from":[274],"past":[275],"phase":[277],"IIa":[278],"trials.":[279]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
