{"id":"https://openalex.org/W3084730237","doi":"https://doi.org/10.1186/s12859-020-03720-1","title":"ADEPT: a domain independent sequence alignment strategy for gpu architectures","display_name":"ADEPT: a domain independent sequence alignment strategy for gpu architectures","publication_year":2020,"publication_date":"2020-09-15","ids":{"openalex":"https://openalex.org/W3084730237","doi":"https://doi.org/10.1186/s12859-020-03720-1","mag":"3084730237","pmid":"https://pubmed.ncbi.nlm.nih.gov/32933482"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03720-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03720-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03720-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03720-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074495772","display_name":"Muaaz Gul Awan","orcid":"https://orcid.org/0000-0003-1233-1862"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Muaaz G. Awan","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA. mgawan@lbl.gov","Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA. mgawan@lbl.gov","institution_ids":[]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044323124","display_name":"Jack Deslippe","orcid":"https://orcid.org/0000-0003-1785-4187"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jack Deslippe","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035719914","display_name":"Ayd\u0131n Bulu\u00e7","orcid":"https://orcid.org/0000-0001-7253-9038"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aydin Buluc","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075496842","display_name":"O\u011fuz Selvitopi","orcid":"https://orcid.org/0000-0002-0203-0372"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oguz Selvitopi","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016671058","display_name":"Steven Hofmeyr","orcid":"https://orcid.org/0000-0002-3299-472X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Hofmeyr","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110759506","display_name":"Leonid Oliker","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonid Oliker","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091741596","display_name":"Katherine Yelick","orcid":"https://orcid.org/0000-0003-0957-701X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Katherine Yelick","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA"],"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5074495772"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.0894,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.87863643,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"406","last_page":"406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9639000296592712,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.821761429309845},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.8212963342666626},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6468757390975952},{"id":"https://openalex.org/keywords/simd","display_name":"SIMD","score":0.6028650999069214},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5393843650817871},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5159600377082825},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.47530397772789},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4509342908859253},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4398333430290222},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43557652831077576},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22376012802124023},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2046920657157898},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1207520067691803},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10436135530471802}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.821761429309845},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.8212963342666626},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6468757390975952},{"id":"https://openalex.org/C150552126","wikidata":"https://www.wikidata.org/wiki/Q339387","display_name":"SIMD","level":2,"score":0.6028650999069214},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5393843650817871},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5159600377082825},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.47530397772789},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4509342908859253},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4398333430290222},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43557652831077576},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22376012802124023},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2046920657157898},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1207520067691803},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10436135530471802},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s12859-020-03720-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03720-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03720-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32933482","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32933482","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:ark:/13030/qt9wh7z4v8","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:ba6db4eab85947ebb0b072d8b847bbc4","is_oa":true,"landing_page_url":"https://doaj.org/article/ba6db4eab85947ebb0b072d8b847bbc4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-29 (2020)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt9wh7z4v8","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/9wh7z4v8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, vol 21, iss 1","raw_type":"article"},{"id":"pmh:oai:osti.gov:1706662","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1706662","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7493400","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7493400","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03720-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03720-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03720-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1319584452","display_name":null,"funder_award_id":"Exascale Computing Project (17-SC-20-SC)","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3232922872","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332369","funder_display_name":"National Nuclear Security Administration"},{"id":"https://openalex.org/G5001603810","display_name":null,"funder_award_id":"17-SC-20-S","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6859237865","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8253304997","display_name":null,"funder_award_id":"17-SC-20-SC","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8681167732","display_name":null,"funder_award_id":"Exascale Computing Project (17-SC-20-SC)","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320332369","display_name":"National Nuclear Security Administration","ror":"https://ror.org/03sk1we31"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3084730237.pdf","grobid_xml":"https://content.openalex.org/works/W3084730237.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1538125091","https://openalex.org/W1547142901","https://openalex.org/W1599079562","https://openalex.org/W1905818355","https://openalex.org/W2005202728","https://openalex.org/W2011652244","https://openalex.org/W2015915218","https://openalex.org/W2017972683","https://openalex.org/W2045204781","https://openalex.org/W2058720919","https://openalex.org/W2065461987","https://openalex.org/W2066852475","https://openalex.org/W2068448872","https://openalex.org/W2074166146","https://openalex.org/W2087064593","https://openalex.org/W2095680943","https://openalex.org/W2119860842","https://openalex.org/W2120549828","https://openalex.org/W2124166542","https://openalex.org/W2132967231","https://openalex.org/W2133098231","https://openalex.org/W2146379626","https://openalex.org/W2158714788","https://openalex.org/W2161072217","https://openalex.org/W2170551349","https://openalex.org/W2753396470","https://openalex.org/W2754016293","https://openalex.org/W2781869913","https://openalex.org/W2799394118","https://openalex.org/W2885911436","https://openalex.org/W2950954328","https://openalex.org/W2962703427","https://openalex.org/W2963585318","https://openalex.org/W2981619930","https://openalex.org/W3038187997","https://openalex.org/W3040041989","https://openalex.org/W3122567528","https://openalex.org/W3131993635","https://openalex.org/W4231539410","https://openalex.org/W4234592442","https://openalex.org/W4236659588","https://openalex.org/W4242248730"],"related_works":["https://openalex.org/W2948014085","https://openalex.org/W2004215917","https://openalex.org/W2103737249","https://openalex.org/W2051969447","https://openalex.org/W1486249959","https://openalex.org/W1974956921","https://openalex.org/W2468116983","https://openalex.org/W2146180248","https://openalex.org/W2111937814","https://openalex.org/W4386770652"],"abstract_inverted_index":{"ADEPT":[0,19,28],"demonstrates":[1],"a":[2,31,38],"performance":[3,53],"that":[4],"is":[5],"either":[6],"comparable":[7],"or":[8],"better":[9],"than":[10],"existing":[11,22],"GPU":[12],"strategies.":[13],"We":[14],"demonstrated":[15],"the":[16],"efficacy":[17],"of":[18,52],"in":[20,29,54],"supporting":[21],"bionformatics":[23],"software":[24],"pipelines":[25],"by":[26],"integrating":[27],"MetaHipMer":[30,55],"high-performance":[32,39],"denovo":[33],"metagenome":[34],"assembler":[35],"and":[36,49,56],"PASTIS":[37,57],"protein":[40],"similarity":[41],"graph":[42],"construction":[43],"pipeline.":[44],"Our":[45],"results":[46],"show":[47],"10%":[48],"30%":[50],"boost":[51],"respectively.":[58]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
