{"id":"https://openalex.org/W3080371575","doi":"https://doi.org/10.1186/s12859-020-03705-0","title":"Predicting viral exposure response from modeling the changes of co-expression networks using time series gene expression data","display_name":"Predicting viral exposure response from modeling the changes of co-expression networks using time series gene expression data","publication_year":2020,"publication_date":"2020-08-26","ids":{"openalex":"https://openalex.org/W3080371575","doi":"https://doi.org/10.1186/s12859-020-03705-0","mag":"3080371575","pmid":"https://pubmed.ncbi.nlm.nih.gov/32842958"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03705-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03705-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03705-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03705-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110376638","display_name":"Fangli Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fangli Dong","raw_affiliation_strings":["SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","School of Mathematical Sciences, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"School of Mathematical Sciences, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102955052","display_name":"Yong He","orcid":"https://orcid.org/0000-0001-6169-9933"},"institutions":[{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong He","raw_affiliation_strings":["Institute for Financial Studies, Shandong University, No. 27 Shanda South Road, Jinan, 250100, China"],"affiliations":[{"raw_affiliation_string":"Institute for Financial Studies, Shandong University, No. 27 Shanda South Road, Jinan, 250100, China","institution_ids":["https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453553","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5728-6463"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017420515","display_name":"Dong Han","orcid":"https://orcid.org/0000-0002-7737-8138"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Han","raw_affiliation_strings":["School of Mathematical Sciences, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"School of Mathematical Sciences, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100716955","display_name":"Hui L\u00fc","orcid":"https://orcid.org/0000-0001-8347-0830"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Lu","raw_affiliation_strings":["SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074828414","display_name":"Hongyu Zhao","orcid":"https://orcid.org/0000-0003-1195-9607"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongyu Zhao","raw_affiliation_strings":["Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT 06520, USA. hongyu.zhao@yale.edu","SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China. hongyu.zhao@yale.edu","SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT 06520, USA. hongyu.zhao@yale.edu","institution_ids":[]},{"raw_affiliation_string":"SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China. hongyu.zhao@yale.edu","institution_ids":[]},{"raw_affiliation_string":"SJTU-Yale Joint Center of Biostatistics and Data Science, Shanghai Jiao Tong University, Dongchuan Road, Shanghai, 200240, China","institution_ids":["https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5110376638"],"corresponding_institution_ids":["https://openalex.org/I183067930"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.5883,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.83460281,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"21","issue":"1","first_page":"370","last_page":"370"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/time-point","display_name":"Time point","score":0.6138484477996826},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5743728280067444},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5635961294174194},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5425570011138916},{"id":"https://openalex.org/keywords/dynamic-bayesian-network","display_name":"Dynamic Bayesian network","score":0.5361623167991638},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.525384247303009},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5246964693069458},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5042446851730347},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4916711449623108},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.48823240399360657},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.446318656206131},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4103556275367737},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3586210608482361},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35145822167396545},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3345928490161896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2920094132423401},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14836806058883667}],"concepts":[{"id":"https://openalex.org/C2779466056","wikidata":"https://www.wikidata.org/wiki/Q107630651","display_name":"Time point","level":2,"score":0.6138484477996826},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5743728280067444},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5635961294174194},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5425570011138916},{"id":"https://openalex.org/C82142266","wikidata":"https://www.wikidata.org/wiki/Q3456604","display_name":"Dynamic Bayesian network","level":3,"score":0.5361623167991638},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.525384247303009},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5246964693069458},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5042446851730347},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4916711449623108},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.48823240399360657},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.446318656206131},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4103556275367737},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3586210608482361},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35145822167396545},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3345928490161896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2920094132423401},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14836806058883667},{"id":"https://openalex.org/C107038049","wikidata":"https://www.wikidata.org/wiki/Q35986","display_name":"Aesthetics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019540","descriptor_name":"Area Under Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D053118","descriptor_name":"Influenza A Virus, H1N1 Subtype","qualifier_ui":"Q000472","qualifier_name":"pathogenicity","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03705-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03705-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03705-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32842958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32842958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:bd0bd2d594224606aca7ab928039ba9c","is_oa":true,"landing_page_url":"https://doaj.org/article/bd0bd2d594224606aca7ab928039ba9c","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss 1, Pp 1-18 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7449007","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7449007","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03705-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03705-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03705-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2696157397","display_name":null,"funder_award_id":"ZR201","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3374796852","display_name":"SaTC: CORE: Medium: Collaborative: Contextual Integrity: From Theory to Practice","funder_award_id":"1801316","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3497226477","display_name":null,"funder_award_id":"ZR2019","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7035690026","display_name":null,"funder_award_id":"ZR2019QA002","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G7227570901","display_name":null,"funder_award_id":"11801316","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308380","display_name":"Yale University","ror":"https://ror.org/03v76x132"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322999","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3080371575.pdf","grobid_xml":"https://content.openalex.org/works/W3080371575.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W634486302","https://openalex.org/W1554944419","https://openalex.org/W1583837637","https://openalex.org/W1663973292","https://openalex.org/W1981276685","https://openalex.org/W1983989471","https://openalex.org/W2014158063","https://openalex.org/W2014648831","https://openalex.org/W2038102631","https://openalex.org/W2047309056","https://openalex.org/W2048987737","https://openalex.org/W2101142880","https://openalex.org/W2101229103","https://openalex.org/W2104156750","https://openalex.org/W2104269704","https://openalex.org/W2116290764","https://openalex.org/W2119950877","https://openalex.org/W2126205901","https://openalex.org/W2132585078","https://openalex.org/W2136988691","https://openalex.org/W2137512539","https://openalex.org/W2142277116","https://openalex.org/W2144738674","https://openalex.org/W2145686583","https://openalex.org/W2146611644","https://openalex.org/W2147566730","https://openalex.org/W2147641793","https://openalex.org/W2154349465","https://openalex.org/W2157898013","https://openalex.org/W2218326748","https://openalex.org/W2232693424","https://openalex.org/W2279836332","https://openalex.org/W2547574709","https://openalex.org/W2787894218","https://openalex.org/W2798909945","https://openalex.org/W3020570927","https://openalex.org/W3104833085"],"related_works":["https://openalex.org/W2544242547","https://openalex.org/W2119218276","https://openalex.org/W2369018153","https://openalex.org/W2530648058","https://openalex.org/W2386937658","https://openalex.org/W2069695727","https://openalex.org/W2124007391","https://openalex.org/W1996185163","https://openalex.org/W1965576512","https://openalex.org/W2084813257"],"abstract_inverted_index":{"The":[0],"biological":[1,13,60],"hypothesis":[2],"in":[3,52],"this":[4],"paper":[5],"is":[6,40],"that":[7,24,55],"the":[8,12,18,26,29,48],"dynamic":[9],"changes":[10],"of":[11],"system":[14],"are":[15],"related":[16],"to":[17,58],"clinical":[19,30],"response.":[20],"Our":[21],"results":[22],"suggest":[23],"when":[25],"relationship":[27],"between":[28],"response":[31],"and":[32],"a":[33,37],"single":[34],"gene":[35,38,53],"or":[36],"set":[39],"not":[41],"significant,":[42],"we":[43],"may":[44,56],"benefit":[45],"from":[46],"studying":[47],"relationships":[49],"among":[50],"genes":[51],"sets":[54],"lead":[57],"novel":[59],"insights.":[61]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":2}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
