{"id":"https://openalex.org/W3086004065","doi":"https://doi.org/10.1186/s12859-020-03684-2","title":"MAIRA- real-time taxonomic and functional analysis of long reads on a laptop","display_name":"MAIRA- real-time taxonomic and functional analysis of long reads on a laptop","publication_year":2020,"publication_date":"2020-09-01","ids":{"openalex":"https://openalex.org/W3086004065","doi":"https://doi.org/10.1186/s12859-020-03684-2","mag":"3086004065","pmid":"https://pubmed.ncbi.nlm.nih.gov/32938391"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-020-03684-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03684-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03684-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03684-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059942408","display_name":"Benjamin Albrecht","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Benjamin Albrecht","raw_affiliation_strings":["Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001761525","display_name":"Caner Ba\u011fc\u0131","orcid":"https://orcid.org/0000-0003-4428-9515"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Caner Ba\u011fc\u0131","raw_affiliation_strings":["Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany","International Max Planck Research School From Molecules to Organisms, Max Planck Institute for Developmental Biology and Eberhard Karls University T\u00fcbingen, Max-Planck-Ring 5, T\u00fcbingen, 72076, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"International Max Planck Research School From Molecules to Organisms, Max Planck Institute for Developmental Biology and Eberhard Karls University T\u00fcbingen, Max-Planck-Ring 5, T\u00fcbingen, 72076, Germany","institution_ids":["https://openalex.org/I4210112458","https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026094905","display_name":"Daniel H. Huson","orcid":"https://orcid.org/0000-0002-2961-604X"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel H. Huson","raw_affiliation_strings":["Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany. daniel.huson@uni-tuebingen.de","Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany. daniel.huson@uni-tuebingen.de","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5059942408"],"corresponding_institution_ids":["https://openalex.org/I8087733"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.1669,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5057783,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"21","issue":"S13","first_page":"390","last_page":"390"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/laptop","display_name":"Laptop","score":0.8573012351989746},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7238374352455139},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.6671703457832336},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6612288951873779},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6485937237739563},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5263363718986511},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.42601585388183594},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.365813285112381},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3080156147480011},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2803078889846802}],"concepts":[{"id":"https://openalex.org/C2780008327","wikidata":"https://www.wikidata.org/wiki/Q3962","display_name":"Laptop","level":2,"score":0.8573012351989746},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7238374352455139},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.6671703457832336},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6612288951873779},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6485937237739563},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5263363718986511},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.42601585388183594},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.365813285112381},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3080156147480011},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2803078889846802},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-020-03684-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03684-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03684-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32938391","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32938391","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:1172cc8277974f0da85c5310ca7980e9","is_oa":true,"landing_page_url":"https://doaj.org/article/1172cc8277974f0da85c5310ca7980e9","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 21, Iss S13, Pp 1-12 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7495841","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7495841","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-020-03684-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-020-03684-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-020-03684-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1993149245","display_name":null,"funder_award_id":"HU 566/12-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2193224940","display_name":null,"funder_award_id":"INST 37/935-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3081074581","display_name":null,"funder_award_id":"37/935-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G411084014","display_name":null,"funder_award_id":"37/935-1 FUGG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4693079983","display_name":null,"funder_award_id":"bwHPC","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7326870749","display_name":null,"funder_award_id":"NST 37/935-1 FUGG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8791088295","display_name":null,"funder_award_id":"INST 37/935-1 FUGG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321112","display_name":"Eberhard Karls Universit\u00e4t T\u00fcbingen","ror":"https://ror.org/03a1kwz48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3086004065.pdf","grobid_xml":"https://content.openalex.org/works/W3086004065.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1981194976","https://openalex.org/W2045204781","https://openalex.org/W2116895571","https://openalex.org/W2119497560","https://openalex.org/W2130734064","https://openalex.org/W2158714788","https://openalex.org/W2259815689","https://openalex.org/W2264290069","https://openalex.org/W2398786667","https://openalex.org/W2465681871","https://openalex.org/W2544493586","https://openalex.org/W2611922188","https://openalex.org/W2760290205","https://openalex.org/W2782327081","https://openalex.org/W2884978946","https://openalex.org/W2899133562","https://openalex.org/W2899343863","https://openalex.org/W2908149669","https://openalex.org/W2949968272","https://openalex.org/W2950266744","https://openalex.org/W2950671516","https://openalex.org/W2951160681","https://openalex.org/W4238143783"],"related_works":["https://openalex.org/W3153292769","https://openalex.org/W2045444909","https://openalex.org/W1516398359","https://openalex.org/W1901656956","https://openalex.org/W2990805456","https://openalex.org/W2941659365","https://openalex.org/W4239210160","https://openalex.org/W2376300433","https://openalex.org/W4242605858","https://openalex.org/W2495255596"],"abstract_inverted_index":{"We":[0],"envision":[1],"this":[2],"software":[3],"being":[4],"used":[5],"by":[6,21],"researchers":[7],"in":[8],"the":[9],"field,":[10],"when":[11],"access":[12,27],"to":[13],"servers":[14],"or":[15,20,36],"cloud":[16],"facilities":[17],"is":[18],"difficult,":[19],"individuals":[22],"that":[23],"do":[24],"not":[25],"routinely":[26],"such":[28,30],"facilities,":[29],"as":[31],"medical":[32],"researchers,":[33],"crop":[34],"scientists,":[35],"teachers.":[37]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
